Wall clock time and date at job start Tue Mar 31 2020 06:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00266 * 2 1 4 4 H 1.48504 * 109.47000 * 270.00310 * 3 2 1 5 5 H 1.48499 * 109.46959 * 29.99961 * 3 2 1 6 6 H 1.48499 * 109.47008 * 149.99984 * 3 2 1 7 7 C 1.37879 * 119.99561 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99751 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00207 * 359.97438 * 7 2 1 10 10 O 1.42901 * 113.25873 * 47.05075 * 9 7 2 11 11 C 1.53511 * 114.17097 * 180.02562 * 9 7 2 12 12 N 1.47484 * 87.93524 * 139.86052 * 11 9 7 13 13 C 1.46900 * 111.00018 * 221.29413 * 12 11 9 14 14 C 1.50696 * 109.46933 * 169.99827 * 13 12 11 15 15 C 1.38271 * 119.97783 * 269.98003 * 14 13 12 16 16 C 1.38173 * 120.02988 * 180.02562 * 15 14 13 17 17 C 1.38488 * 119.97081 * 359.70729 * 16 15 14 18 18 F 1.35102 * 120.02428 * 180.29557 * 17 16 15 19 19 C 1.38441 * 119.94810 * 0.56954 * 17 16 15 20 20 S 1.76193 * 120.01156 * 179.72789 * 19 17 16 21 21 N 1.65606 * 107.21910 * 294.72332 * 20 19 17 22 22 O 1.42105 * 106.40403 * 48.26221 * 20 19 17 23 23 O 1.42098 * 106.40145 * 181.18150 * 20 19 17 24 24 C 1.38218 * 119.97342 * 359.44959 * 19 17 16 25 25 C 1.47481 * 87.83295 * 332.99025 * 12 11 9 26 26 H 0.96998 * 119.99933 * 359.97438 * 1 2 3 27 27 H 0.96692 * 113.99843 * 312.95269 * 10 9 7 28 28 H 1.08997 * 113.48039 * 25.09413 * 11 9 7 29 29 H 1.08998 * 113.53101 * 254.63622 * 11 9 7 30 30 H 1.09005 * 109.46678 * 49.99995 * 13 12 11 31 31 H 1.09000 * 109.47439 * 290.00214 * 13 12 11 32 32 H 1.08000 * 119.98191 * 359.97438 * 15 14 13 33 33 H 1.07994 * 120.01616 * 179.97438 * 16 15 14 34 34 H 0.97000 * 120.00111 * 180.02562 * 21 20 19 35 35 H 0.96998 * 119.99947 * 359.97438 * 21 20 19 36 36 H 1.07995 * 119.98890 * 180.27828 * 24 19 17 37 37 H 1.08997 * 113.47679 * 141.77704 * 25 12 11 38 38 H 1.09001 * 113.47166 * 272.24159 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 8 0.1937 -2.5403 -0.9611 11 6 2.1495 -3.7438 -0.0005 12 7 1.2048 -4.3602 0.9496 13 6 1.9204 -5.0903 2.0046 14 6 0.9487 -5.4949 3.0830 15 6 0.7105 -4.6494 4.1509 16 6 -0.1798 -5.0196 5.1406 17 6 -0.8382 -6.2352 5.0596 18 9 -1.7134 -6.5956 6.0237 19 6 -0.5945 -7.0834 3.9930 20 16 -1.4258 -8.6336 3.8920 21 7 -0.9053 -9.5530 5.1672 22 8 -2.8021 -8.3669 4.1249 23 8 -0.9458 -9.2704 2.7158 24 6 0.2968 -6.7112 3.0043 25 6 0.8516 -2.9993 1.3948 26 1 -0.4850 0.8400 0.0004 27 1 -0.3707 -1.7552 -0.9586 28 1 3.1377 -3.5660 0.4235 29 1 2.1895 -4.2516 -0.9642 30 1 2.6910 -4.4485 2.4318 31 1 2.3836 -5.9809 1.5800 32 1 1.2211 -3.6997 4.2118 33 1 -0.3655 -4.3593 5.9748 34 1 -1.2494 -10.4517 5.2896 35 1 -0.2559 -9.1932 5.7914 36 1 0.4837 -7.3707 2.1698 37 1 -0.2090 -2.8755 1.6134 38 1 1.4936 -2.6228 2.1912 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589822002.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:01 Heat of formation + Delta-G solvation = -97.937536 kcal Electronic energy + Delta-G solvation = -26127.039816 eV Core-core repulsion = 22012.538611 eV Total energy + Delta-G solvation = -4114.501205 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.088 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.40614 -39.93160 -38.66253 -37.24525 -35.97929 -34.55429 -33.47395 -32.19231 -31.90611 -31.68225 -28.12840 -25.82374 -25.03547 -23.85137 -23.12326 -21.47347 -19.68740 -18.74230 -18.50955 -17.75912 -17.52337 -17.33247 -16.90833 -16.06320 -15.94889 -15.45748 -15.25124 -15.13133 -14.71443 -14.44347 -14.22611 -14.01370 -13.61301 -13.15822 -12.76394 -12.49551 -12.35533 -12.32270 -12.19859 -12.09486 -12.02435 -11.60194 -11.45279 -11.23189 -10.99721 -10.78084 -10.76091 -10.71285 -10.38200 -10.09283 -9.76636 -9.44152 -8.90716 -8.67832 -8.27564 -8.00754 -6.34200 -4.44764 0.13421 0.46711 0.91957 2.82850 3.11364 3.14204 3.22280 3.23855 3.43044 3.74325 4.18349 4.20618 4.52725 4.72364 4.81393 4.88472 4.99545 5.05983 5.17097 5.49470 5.56487 5.64685 5.69289 5.80355 5.82051 5.87031 5.95396 6.17702 6.20044 6.31715 6.52916 6.60604 6.71507 6.92920 7.01380 7.25500 7.68974 7.81166 7.92482 8.57840 9.25994 9.62415 10.71735 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.022897 B = 0.002974 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.575040 B = 9411.142169 C = 9817.106769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.071 3.929 3 Si 0.905 3.095 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.537 4.537 8 H 0.067 0.933 9 C 0.249 3.751 10 O -0.570 6.570 11 C 0.003 3.997 12 N -0.466 5.466 13 C 0.051 3.949 14 C -0.090 4.090 15 C -0.023 4.023 16 C -0.168 4.168 17 C 0.181 3.819 18 F -0.124 7.124 19 C -0.712 4.712 20 S 2.706 3.294 21 N -1.249 6.249 22 O -0.954 6.954 23 O -0.957 6.957 24 C 0.025 3.975 25 C -0.023 4.023 26 H 0.272 0.728 27 H 0.391 0.609 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.052 0.948 31 H 0.083 0.917 32 H 0.143 0.857 33 H 0.146 0.854 34 H 0.420 0.580 35 H 0.415 0.585 36 H 0.156 0.844 37 H 0.069 0.931 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.261 -13.749 13.280 19.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.131 4.131 3 Si 0.732 3.268 4 H -0.202 1.202 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.575 4.575 8 H 0.085 0.915 9 C 0.207 3.793 10 O -0.382 6.382 11 C -0.126 4.126 12 N -0.188 5.188 13 C -0.077 4.077 14 C -0.092 4.092 15 C -0.042 4.042 16 C -0.188 4.188 17 C 0.160 3.840 18 F -0.102 7.102 19 C -0.799 4.799 20 S 2.793 3.207 21 N -0.924 5.924 22 O -0.943 6.943 23 O -0.946 6.946 24 C 0.005 3.995 25 C -0.152 4.152 26 H 0.083 0.917 27 H 0.247 0.753 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.071 0.929 31 H 0.101 0.899 32 H 0.160 0.840 33 H 0.163 0.837 34 H 0.251 0.749 35 H 0.242 0.758 36 H 0.174 0.826 37 H 0.087 0.913 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.131 -14.836 12.150 19.209 hybrid contribution 1.240 2.251 1.499 2.975 sum 2.371 -12.585 13.649 18.716 Atomic orbital electron populations 1.69294 1.06135 1.27950 1.50319 1.25075 0.94981 0.99740 0.93319 0.86391 0.79684 0.82275 0.78469 1.20245 1.20944 1.19737 1.21564 0.93659 0.90477 1.51782 0.91517 1.19332 0.85108 0.90592 0.84276 1.86038 1.45188 1.48149 1.58815 1.24116 0.95216 0.96484 0.96738 1.69119 1.26623 1.14000 1.09097 1.21703 0.93615 1.00443 0.91984 1.20064 0.99107 0.94043 0.95956 1.21403 0.93370 0.98376 0.91059 1.21214 0.99580 0.95874 1.02105 1.17029 0.88055 0.93925 0.84969 1.91599 1.66102 1.91597 1.60951 1.30480 1.20034 1.24282 1.05154 1.01507 0.73510 0.72860 0.72806 1.53019 1.61300 1.29884 1.48161 1.93638 1.31261 1.84573 1.84831 1.93609 1.81159 1.73880 1.45993 1.20794 0.88602 0.95788 0.94313 1.24733 1.00871 0.87526 1.02070 0.91728 0.75348 0.91577 0.90734 0.92945 0.89873 0.83953 0.83663 0.74921 0.75791 0.82647 0.91284 0.92332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.43 11.02 55.43 0.61 -22.82 16 2 C 0.07 1.81 5.39 -17.82 -0.10 1.71 16 3 Si 0.90 19.68 29.54 -169.99 -5.02 14.66 16 4 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 6 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 7 C -0.54 -13.71 8.69 -34.44 -0.30 -14.01 16 8 H 0.07 1.66 7.81 -52.49 -0.41 1.25 16 9 C 0.25 6.06 1.56 -91.24 -0.14 5.91 16 10 O -0.57 -15.22 13.53 -35.23 -0.48 -15.70 16 11 C 0.00 0.06 7.12 -7.55 -0.05 0.01 16 12 N -0.47 -9.09 6.40 -246.08 -1.58 -10.66 16 13 C 0.05 0.76 4.98 -4.98 -0.02 0.73 16 14 C -0.09 -1.25 5.18 -104.62 -0.54 -1.79 16 15 C -0.02 -0.29 9.12 -39.59 -0.36 -0.65 16 16 C -0.17 -1.94 10.03 -39.51 -0.40 -2.34 16 17 C 0.18 2.23 7.21 -39.41 -0.28 1.95 16 18 F -0.12 -1.50 16.27 2.25 0.04 -1.47 16 19 C -0.71 -8.91 5.88 -39.51 -0.23 -9.14 16 20 S 2.71 31.66 5.93 -107.50 -0.64 31.02 16 21 N -1.25 -8.63 9.55 60.35 0.58 -8.06 16 22 O -0.95 -14.54 17.42 -57.17 -1.00 -15.54 16 23 O -0.96 -13.57 16.97 -57.17 -0.97 -14.54 16 24 C 0.02 0.33 9.20 -39.59 -0.36 -0.03 16 25 C -0.02 -0.49 6.25 -7.55 -0.05 -0.54 16 26 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 27 H 0.39 10.64 6.33 45.56 0.29 10.93 16 28 H 0.07 1.24 7.73 -51.93 -0.40 0.83 16 29 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 30 H 0.05 0.73 7.50 -51.93 -0.39 0.34 16 31 H 0.08 1.10 8.08 -51.93 -0.42 0.68 16 32 H 0.14 1.63 7.70 -52.49 -0.40 1.22 16 33 H 0.15 1.31 8.06 -52.49 -0.42 0.89 16 34 H 0.42 2.02 8.96 -34.48 -0.31 1.71 16 35 H 0.42 1.96 8.92 -34.47 -0.31 1.66 16 36 H 0.16 1.98 7.33 -52.49 -0.38 1.59 16 37 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 38 H 0.06 1.19 7.31 -51.93 -0.38 0.81 16 LS Contribution 338.91 15.07 5.11 5.11 Total: -1.00 -32.67 338.91 -9.71 -42.38 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: -3.52 Total: 13.82 kcal Atomic # 6 Polarization: -15.35 SS G_CDS: -2.84 Total: -18.19 kcal Atomic # 7 Polarization: -41.15 SS G_CDS: -0.39 Total: -41.54 kcal Atomic # 8 Polarization: -43.33 SS G_CDS: -2.44 Total: -45.78 kcal Atomic # 9 Polarization: -1.50 SS G_CDS: 0.04 Total: -1.47 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.02 Total: 14.66 kcal Atomic # 16 Polarization: 31.66 SS G_CDS: -0.64 Total: 31.02 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.67 -9.71 -42.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589822002.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.558 kcal (2) G-P(sol) polarization free energy of solvation -32.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds