Wall clock time and date at job start Tue Mar 31 2020 05:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42904 * 113.99592 * 2 1 4 4 C 1.53001 * 109.46693 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.46925 * 179.97438 * 4 3 2 6 6 N 1.46902 * 109.47244 * 180.02562 * 5 4 3 7 7 C 1.46904 * 110.99699 * 293.95285 * 6 5 4 8 8 C 1.46898 * 111.00029 * 170.00114 * 6 5 4 9 9 C 1.52998 * 109.47181 * 189.99955 * 8 6 5 10 10 N 1.46495 * 109.47267 * 179.97438 * 9 8 6 11 11 C 1.34783 * 119.99751 * 180.02562 * 10 9 8 12 12 O 1.21584 * 120.00304 * 359.97438 * 11 10 9 13 13 N 1.34782 * 119.99610 * 179.97438 * 11 10 9 14 14 C 1.47021 * 125.64903 * 359.95841 * 13 11 10 15 15 C 1.54371 * 107.28632 * 181.12818 * 14 13 11 16 16 C 1.55156 * 102.92059 * 22.13773 * 15 14 13 17 17 O 1.42894 * 111.00351 * 82.64238 * 16 15 14 18 18 C 1.50705 * 111.00016 * 206.45621 * 16 15 14 19 19 H 1.07993 * 120.00222 * 356.18276 * 18 16 15 20 20 C 1.37881 * 119.99392 * 175.91314 * 18 16 15 21 21 N 1.31509 * 120.00570 * 354.23595 * 20 18 16 22 22 Si 1.86802 * 119.99449 * 174.23797 * 20 18 16 23 23 H 1.48500 * 109.47140 * 94.98922 * 22 20 18 24 24 H 1.48506 * 109.47182 * 214.98446 * 22 20 18 25 25 H 1.48500 * 109.47323 * 334.98680 * 22 20 18 26 26 C 1.47424 * 125.64568 * 179.97438 * 13 11 10 27 27 H 1.09004 * 109.46699 * 299.99860 * 1 2 3 28 28 H 1.08994 * 109.47201 * 59.99981 * 1 2 3 29 29 H 1.09001 * 109.46674 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47492 * 59.99860 * 3 2 1 31 31 H 1.09007 * 109.46939 * 299.99885 * 3 2 1 32 32 H 1.08999 * 109.47278 * 60.00074 * 4 3 2 33 33 H 1.08997 * 109.47188 * 299.99502 * 4 3 2 34 34 H 1.08995 * 109.47296 * 59.99587 * 5 4 3 35 35 H 1.09007 * 109.46903 * 299.99753 * 5 4 3 36 36 H 1.08997 * 109.46857 * 296.04516 * 7 6 5 37 37 H 1.08998 * 109.46821 * 56.04262 * 7 6 5 38 38 H 1.08991 * 109.46912 * 176.04968 * 7 6 5 39 39 H 1.08995 * 109.47342 * 69.99661 * 8 6 5 40 40 H 1.09004 * 109.46982 * 309.99424 * 8 6 5 41 41 H 1.09004 * 109.47132 * 59.99425 * 9 8 6 42 42 H 1.09004 * 109.46822 * 300.00171 * 9 8 6 43 43 H 0.96999 * 119.99964 * 359.97438 * 10 9 8 44 44 H 1.08996 * 109.87865 * 300.51069 * 14 13 11 45 45 H 1.09004 * 109.88436 * 61.67611 * 14 13 11 46 46 H 1.09003 * 110.70184 * 263.79158 * 15 14 13 47 47 H 1.08998 * 110.75668 * 140.50398 * 15 14 13 48 48 H 0.96708 * 113.99643 * 183.17715 * 17 16 15 49 49 H 0.96997 * 120.00732 * 179.97438 * 21 20 18 50 50 H 1.08999 * 110.36723 * 36.99330 * 26 13 11 51 51 H 1.09001 * 110.45885 * 274.72191 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1577 2.5825 -0.0013 6 7 5.6221 2.4666 -0.0025 7 6 6.1040 1.8701 1.2505 8 6 6.2533 3.7714 -0.2413 9 6 7.7514 3.5766 -0.4835 10 7 8.3807 4.8777 -0.7222 11 6 9.7051 4.9520 -0.9613 12 8 10.3776 3.9392 -0.9784 13 7 10.2840 6.1491 -1.1814 14 6 9.5927 7.4466 -1.1902 15 6 10.6480 8.5265 -1.5113 16 6 11.7660 7.7186 -2.2218 17 8 11.4616 7.5304 -3.6052 18 6 13.1061 8.3870 -2.0525 19 1 13.1749 9.3384 -1.5461 20 6 14.2449 7.7811 -2.5393 21 7 14.1792 6.5708 -3.0495 22 14 15.8814 8.6796 -2.4742 23 1 16.6184 8.2776 -1.2493 24 1 16.6858 8.3306 -3.6728 25 1 15.6410 10.1448 -2.4489 26 6 11.7153 6.3742 -1.4536 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.6886 1.8465 0.8899 31 1 1.6885 1.8464 -0.8901 32 1 3.8567 0.6440 -0.8908 33 1 3.8574 0.6437 0.8891 34 1 3.8364 3.1237 0.8886 35 1 3.8357 3.1232 -0.8914 36 1 5.8651 2.5316 2.0832 37 1 5.6207 0.9050 1.4028 38 1 7.1836 1.7312 1.1951 39 1 6.1061 4.4109 0.6290 40 1 5.8016 4.2388 -1.1163 41 1 7.8986 2.9370 -1.3538 42 1 8.2031 3.1091 0.3915 43 1 7.8442 5.6857 -0.7090 44 1 8.8169 7.4480 -1.9558 45 1 9.1514 7.6382 -0.2120 46 1 11.0241 8.9821 -0.5952 47 1 10.2356 9.2833 -2.1786 48 1 12.1076 6.9896 -4.0800 49 1 14.9802 6.1447 -3.3923 50 1 12.1153 5.5695 -2.0705 51 1 12.2735 6.4489 -0.5203 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591968341.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:59 Heat of formation + Delta-G solvation = -117.400597 kcal Electronic energy + Delta-G solvation = -28258.307869 eV Core-core repulsion = 24193.054968 eV Total energy + Delta-G solvation = -4065.252901 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 329.215 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.66159 -38.75945 -37.97237 -37.25056 -34.58107 -34.20482 -32.62179 -32.20560 -30.24096 -28.80364 -27.74302 -27.66816 -26.46435 -25.08477 -24.02601 -22.51867 -21.64418 -21.12061 -19.64579 -19.41821 -17.53661 -17.01933 -16.96704 -16.72620 -16.22406 -15.96576 -15.52772 -15.22839 -15.04152 -14.74474 -14.62476 -14.34592 -14.24073 -13.83031 -13.60621 -13.06835 -12.97627 -12.75227 -12.63348 -12.22095 -12.19369 -12.12040 -12.02219 -11.68850 -11.60647 -11.47814 -11.42508 -11.15511 -11.07797 -11.00928 -10.77152 -10.57223 -10.47946 -10.17770 -10.10895 -9.58736 -9.32366 -8.78085 -8.69866 -8.69291 -8.33356 -7.64454 -6.25407 -4.35525 2.92709 3.21528 3.29352 3.30772 3.33715 3.79765 3.83187 4.27741 4.47771 4.56669 4.64892 4.72812 4.75569 4.86970 4.90246 4.94586 4.99965 5.00834 5.05228 5.16399 5.22923 5.25174 5.30184 5.36871 5.42470 5.63102 5.65849 5.75049 5.77232 5.82341 5.89980 5.98838 6.02487 6.15358 6.53196 6.63105 6.65796 6.72721 6.74849 6.84302 6.92543 7.01310 7.28127 7.35476 7.68620 7.76820 8.04419 8.57462 8.68975 9.18122 9.32533 9.37874 10.80885 Molecular weight = 329.21amu Principal moments of inertia in cm(-1) A = 0.037088 B = 0.001711 C = 0.001685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.774514 B =16360.889110 C =16615.130589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.392 6.392 3 C 0.062 3.938 4 C -0.117 4.117 5 C 0.060 3.940 6 N -0.537 5.537 7 C 0.015 3.985 8 C 0.046 3.954 9 C 0.144 3.856 10 N -0.753 5.753 11 C 0.717 3.283 12 O -0.595 6.595 13 N -0.629 5.629 14 C 0.106 3.894 15 C -0.116 4.116 16 C 0.247 3.753 17 O -0.582 6.582 18 C -0.540 4.540 19 H 0.067 0.933 20 C 0.072 3.928 21 N -0.890 5.890 22 Si 0.902 3.098 23 H -0.279 1.279 24 H -0.284 1.284 25 H -0.272 1.272 26 C 0.115 3.885 27 H 0.040 0.960 28 H 0.041 0.959 29 H 0.086 0.914 30 H 0.047 0.953 31 H 0.050 0.950 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.036 0.964 35 H 0.077 0.923 36 H 0.027 0.973 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.040 0.960 40 H 0.081 0.919 41 H 0.073 0.927 42 H 0.063 0.937 43 H 0.391 0.609 44 H 0.055 0.945 45 H 0.049 0.951 46 H 0.077 0.923 47 H 0.073 0.927 48 H 0.381 0.619 49 H 0.270 0.730 50 H 0.086 0.914 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.955 -6.398 7.546 25.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.311 6.311 3 C -0.015 4.015 4 C -0.155 4.155 5 C -0.068 4.068 6 N -0.261 5.261 7 C -0.133 4.133 8 C -0.082 4.082 9 C 0.019 3.981 10 N -0.411 5.411 11 C 0.419 3.581 12 O -0.474 6.474 13 N -0.366 5.366 14 C -0.018 4.018 15 C -0.154 4.154 16 C 0.207 3.793 17 O -0.390 6.390 18 C -0.578 4.578 19 H 0.085 0.915 20 C -0.132 4.132 21 N -0.528 5.528 22 Si 0.730 3.270 23 H -0.205 1.205 24 H -0.209 1.209 25 H -0.197 1.197 26 C -0.007 4.007 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.104 0.896 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.101 0.899 33 H 0.091 0.909 34 H 0.054 0.946 35 H 0.096 0.904 36 H 0.045 0.955 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.058 0.942 40 H 0.099 0.901 41 H 0.091 0.909 42 H 0.081 0.919 43 H 0.224 0.776 44 H 0.073 0.927 45 H 0.067 0.933 46 H 0.095 0.905 47 H 0.092 0.908 48 H 0.230 0.770 49 H 0.080 0.920 50 H 0.104 0.896 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -23.628 -7.484 7.237 25.820 hybrid contribution 0.613 1.230 0.632 1.513 sum -23.015 -6.253 7.868 25.114 Atomic orbital electron populations 1.22747 0.80937 1.02839 0.99981 1.87882 1.19770 1.28040 1.95425 1.22486 0.94167 0.84676 1.00158 1.21509 0.92266 0.97387 1.04346 1.21985 0.87210 0.96486 1.01152 1.61780 1.05479 1.23285 1.35533 1.22572 1.02001 0.99581 0.89177 1.22259 0.94805 0.90009 1.01127 1.20993 0.90192 0.84837 1.02097 1.45013 1.07638 1.09291 1.79111 1.15471 0.81167 0.83204 0.78266 1.90891 1.62758 1.33863 1.59882 1.47951 1.11599 1.03748 1.73291 1.21921 0.96217 0.84676 0.98975 1.22594 0.95776 0.96555 1.00432 1.19633 0.91350 0.88865 0.79479 1.86097 1.54105 1.75629 1.23216 1.21462 0.90924 1.06638 1.38816 0.91526 1.25082 0.99596 0.94495 0.94029 1.69764 1.30233 1.12557 1.40253 0.86413 0.82818 0.80061 0.77745 1.20538 1.20931 1.19665 1.23142 0.76231 1.01472 0.99842 0.94118 0.93999 0.89566 0.93460 0.93150 0.89947 0.90890 0.94611 0.90408 0.95464 0.90871 0.90505 0.94171 0.90052 0.90916 0.91889 0.77553 0.92711 0.93270 0.90457 0.90806 0.76961 0.91998 0.89613 0.92542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.40 10.70 -35.23 -0.38 -3.78 16 3 C 0.06 0.43 5.94 37.16 0.22 0.65 16 4 C -0.12 -0.87 5.51 -26.73 -0.15 -1.02 16 5 C 0.06 0.44 4.96 -3.82 -0.02 0.42 16 6 N -0.54 -4.94 4.76 -242.92 -1.16 -6.10 16 7 C 0.01 0.13 9.13 60.07 0.55 0.67 16 8 C 0.05 0.44 5.07 -3.83 -0.02 0.42 16 9 C 0.14 1.90 5.60 -4.05 -0.02 1.88 16 10 N -0.75 -11.45 5.52 -65.22 -0.36 -11.81 16 11 C 0.72 14.90 8.49 -86.91 -0.74 14.17 16 12 O -0.60 -14.84 16.60 5.29 0.09 -14.75 16 13 N -0.63 -13.21 3.33 -176.20 -0.59 -13.79 16 14 C 0.11 1.83 6.15 -3.04 -0.02 1.81 16 15 C -0.12 -2.26 6.13 -24.87 -0.15 -2.42 16 16 C 0.25 5.98 0.88 -89.61 -0.08 5.90 16 17 O -0.58 -14.79 13.17 -35.23 -0.46 -15.26 16 18 C -0.54 -14.01 8.25 -34.44 -0.28 -14.30 16 19 H 0.07 1.69 7.79 -52.49 -0.41 1.28 16 20 C 0.07 1.87 5.27 -17.82 -0.09 1.77 16 21 N -0.89 -23.89 10.70 55.43 0.59 -23.30 16 22 Si 0.90 20.33 29.54 -169.99 -5.02 15.31 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 26 C 0.11 2.81 5.40 -2.52 -0.01 2.80 16 27 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 28 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.05 0.30 8.14 -51.92 -0.42 -0.12 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.56 6.47 -51.93 -0.34 0.23 16 34 H 0.04 0.24 8.12 -51.93 -0.42 -0.18 16 35 H 0.08 0.52 7.93 -51.92 -0.41 0.11 16 36 H 0.03 0.22 8.14 -51.93 -0.42 -0.21 16 37 H 0.07 0.56 6.30 -51.93 -0.33 0.23 16 38 H 0.08 0.73 6.47 -51.93 -0.34 0.39 16 39 H 0.04 0.35 8.12 -51.93 -0.42 -0.07 16 40 H 0.08 0.71 7.93 -51.93 -0.41 0.30 16 41 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.06 0.88 6.55 -51.93 -0.34 0.54 16 43 H 0.39 4.87 7.46 -40.82 -0.30 4.57 16 44 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 46 H 0.08 1.43 8.03 -51.93 -0.42 1.01 16 47 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 48 H 0.38 9.97 7.54 45.56 0.34 10.31 16 49 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 50 H 0.09 2.38 7.31 -51.93 -0.38 2.00 16 51 H 0.06 1.43 8.03 -51.93 -0.42 1.02 16 LS Contribution 405.35 15.07 6.11 6.11 Total: -1.00 -31.59 405.35 -9.26 -40.85 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: -8.38 Total: 12.49 kcal Atomic # 6 Polarization: 13.75 SS G_CDS: 0.29 Total: 14.04 kcal Atomic # 7 Polarization: -53.49 SS G_CDS: -1.51 Total: -55.00 kcal Atomic # 8 Polarization: -33.03 SS G_CDS: -0.75 Total: -33.79 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -31.59 -9.26 -40.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591968341.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.554 kcal (2) G-P(sol) polarization free energy of solvation -31.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds