Wall clock time and date at job start Tue Mar 31 2020 05:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 114.00464 * 2 1 4 4 C 1.52999 * 109.47098 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.46704 * 180.02562 * 4 3 2 6 6 N 1.46902 * 109.46590 * 179.97438 * 5 4 3 7 7 C 1.46898 * 111.00283 * 293.95038 * 6 5 4 8 8 C 1.46906 * 110.99573 * 169.99897 * 6 5 4 9 9 C 1.52997 * 109.46848 * 189.99875 * 8 6 5 10 10 N 1.46506 * 109.47051 * 179.97438 * 9 8 6 11 11 C 1.34773 * 119.99744 * 179.97438 * 10 9 8 12 12 O 1.21585 * 120.00403 * 0.02562 * 11 10 9 13 13 N 1.34784 * 119.99561 * 180.02562 * 11 10 9 14 14 C 1.47022 * 125.64937 * 359.70059 * 13 11 10 15 15 C 1.54332 * 107.26558 * 178.84700 * 14 13 11 16 16 C 1.55160 * 103.01843 * 338.13633 * 15 14 13 17 17 O 1.42898 * 111.00511 * 277.23273 * 16 15 14 18 18 C 1.50706 * 111.03411 * 153.39895 * 16 15 14 19 19 H 1.07999 * 120.00133 * 6.33142 * 18 16 15 20 20 C 1.37873 * 119.99998 * 186.33478 * 18 16 15 21 21 N 1.31519 * 120.00132 * 359.97438 * 20 18 16 22 22 Si 1.86799 * 120.00145 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.46942 * 59.99648 * 22 20 18 24 24 H 1.48503 * 109.47186 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.46828 * 299.99706 * 22 20 18 26 26 C 1.47423 * 125.64469 * 179.97438 * 13 11 10 27 27 H 1.09002 * 109.46634 * 300.00256 * 1 2 3 28 28 H 1.09001 * 109.47125 * 59.99718 * 1 2 3 29 29 H 1.08999 * 109.47261 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46715 * 59.99638 * 3 2 1 31 31 H 1.09004 * 109.46301 * 300.00504 * 3 2 1 32 32 H 1.08995 * 109.47039 * 59.99834 * 4 3 2 33 33 H 1.09000 * 109.46824 * 299.99587 * 4 3 2 34 34 H 1.08993 * 109.47005 * 60.00148 * 5 4 3 35 35 H 1.09000 * 109.47130 * 299.99383 * 5 4 3 36 36 H 1.08997 * 109.47334 * 296.05250 * 7 6 5 37 37 H 1.09000 * 109.46674 * 56.05127 * 7 6 5 38 38 H 1.08995 * 109.47296 * 176.04950 * 7 6 5 39 39 H 1.08998 * 109.47121 * 309.99709 * 8 6 5 40 40 H 1.09000 * 109.47141 * 69.99907 * 8 6 5 41 41 H 1.08998 * 109.47584 * 300.00097 * 9 8 6 42 42 H 1.09005 * 109.46901 * 60.00396 * 9 8 6 43 43 H 0.96996 * 119.99599 * 0.02562 * 10 9 8 44 44 H 1.08997 * 109.87799 * 298.39081 * 14 13 11 45 45 H 1.09000 * 109.88239 * 59.55023 * 14 13 11 46 46 H 1.09001 * 110.84761 * 219.67212 * 15 14 13 47 47 H 1.08997 * 110.51582 * 96.44821 * 15 14 13 48 48 H 0.96705 * 113.99637 * 173.65031 * 17 16 15 49 49 H 0.96994 * 120.00407 * 179.97438 * 21 20 18 50 50 H 1.08995 * 110.36940 * 322.93572 * 26 13 11 51 51 H 1.09003 * 110.36283 * 85.15566 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 3.5356 1.1845 -0.0006 5 6 4.1579 2.5822 0.0000 6 7 5.6223 2.4661 0.0000 7 6 6.1031 1.8690 1.2531 8 6 6.2538 3.7710 -0.2376 9 6 7.7521 3.5762 -0.4785 10 7 8.3818 4.8775 -0.7161 11 6 9.7065 4.9518 -0.9529 12 8 10.3789 3.9389 -0.9699 13 7 10.2859 6.1491 -1.1709 14 6 9.5938 7.4461 -1.1848 15 6 10.6601 8.5315 -1.4434 16 6 11.9776 7.8382 -1.0066 17 8 12.1592 7.9281 0.4079 18 6 13.1615 8.4166 -1.7381 19 1 13.0328 9.2761 -2.3793 20 6 14.4088 7.8485 -1.5889 21 7 14.5657 6.8021 -0.8077 22 14 15.8761 8.5650 -2.4961 23 1 16.0731 9.9772 -2.0814 24 1 17.0928 7.7790 -2.1684 25 1 15.6290 8.5086 -3.9593 26 6 11.7177 6.3742 -1.4406 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.6887 1.8463 0.8899 31 1 1.6886 1.8463 -0.8900 32 1 3.8567 0.6437 -0.8908 33 1 3.8574 0.6434 0.8892 34 1 3.8366 3.1225 0.8904 35 1 3.8360 3.1237 -0.8896 36 1 5.8635 2.5299 2.0860 37 1 5.6197 0.9038 1.4044 38 1 7.1828 1.7299 1.1985 39 1 5.8029 4.2389 -1.1127 40 1 6.1059 4.4101 0.6329 41 1 8.2031 3.1082 0.3965 42 1 7.8999 2.9371 -1.3491 43 1 7.8454 5.6855 -0.7022 44 1 8.8479 7.4597 -1.9795 45 1 9.1151 7.6212 -0.2213 46 1 10.4693 9.4154 -0.8348 47 1 10.6929 8.7903 -2.5017 48 1 12.9169 7.4272 0.7398 49 1 15.4431 6.4022 -0.7030 50 1 12.3271 5.6897 -0.8506 51 1 11.9279 6.2490 -2.5028 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591968342.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:05 Heat of formation + Delta-G solvation = -117.509842 kcal Electronic energy + Delta-G solvation = -28264.952261 eV Core-core repulsion = 24199.694623 eV Total energy + Delta-G solvation = -4065.257638 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 329.215 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.67228 -38.76317 -37.97608 -37.25478 -34.58713 -34.18916 -32.62471 -32.20554 -30.24205 -28.81011 -27.74243 -27.67174 -26.46577 -25.08312 -24.02622 -22.52679 -21.64903 -21.12071 -19.64880 -19.43191 -17.53785 -16.99798 -16.96830 -16.72891 -16.22816 -15.98470 -15.48263 -15.31610 -15.00388 -14.73966 -14.58892 -14.42971 -14.22991 -13.82440 -13.61099 -13.06687 -12.98413 -12.75349 -12.63104 -12.22970 -12.18240 -12.11402 -12.03272 -11.68118 -11.63043 -11.45743 -11.35738 -11.18572 -11.08378 -10.99425 -10.80251 -10.59174 -10.47343 -10.17656 -10.11363 -9.59789 -9.34086 -8.78958 -8.69409 -8.66772 -8.33650 -7.65834 -6.24833 -4.34961 2.92144 3.23728 3.29285 3.30190 3.32262 3.78837 3.82762 4.28230 4.47296 4.55955 4.64533 4.72502 4.75361 4.86658 4.90059 4.94314 4.99697 5.02108 5.05163 5.16489 5.22799 5.25195 5.31191 5.36820 5.42334 5.63233 5.65753 5.74591 5.76951 5.82136 5.90122 5.97741 6.02906 6.14797 6.52688 6.62656 6.65570 6.72146 6.74577 6.83683 6.91200 6.99698 7.26257 7.35183 7.67309 7.76894 8.05941 8.56426 8.69278 9.17066 9.32378 9.40572 10.82173 Molecular weight = 329.21amu Principal moments of inertia in cm(-1) A = 0.038126 B = 0.001710 C = 0.001683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.229233 B =16368.218416 C =16632.640827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.392 6.392 3 C 0.062 3.938 4 C -0.117 4.117 5 C 0.060 3.940 6 N -0.537 5.537 7 C 0.014 3.986 8 C 0.046 3.954 9 C 0.144 3.856 10 N -0.753 5.753 11 C 0.717 3.283 12 O -0.595 6.595 13 N -0.629 5.629 14 C 0.106 3.894 15 C -0.116 4.116 16 C 0.248 3.752 17 O -0.583 6.583 18 C -0.539 4.539 19 H 0.066 0.934 20 C 0.072 3.928 21 N -0.892 5.892 22 Si 0.904 3.096 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.275 1.275 26 C 0.114 3.886 27 H 0.040 0.960 28 H 0.041 0.959 29 H 0.086 0.914 30 H 0.047 0.953 31 H 0.050 0.950 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.036 0.964 35 H 0.077 0.923 36 H 0.027 0.973 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.041 0.959 41 H 0.063 0.937 42 H 0.072 0.928 43 H 0.391 0.609 44 H 0.050 0.950 45 H 0.054 0.946 46 H 0.073 0.927 47 H 0.077 0.923 48 H 0.381 0.619 49 H 0.271 0.729 50 H 0.085 0.915 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.910 -7.043 2.337 25.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.311 6.311 3 C -0.015 4.015 4 C -0.155 4.155 5 C -0.068 4.068 6 N -0.261 5.261 7 C -0.134 4.134 8 C -0.082 4.082 9 C 0.019 3.981 10 N -0.410 5.410 11 C 0.419 3.581 12 O -0.474 6.474 13 N -0.366 5.366 14 C -0.018 4.018 15 C -0.154 4.154 16 C 0.208 3.792 17 O -0.392 6.392 18 C -0.578 4.578 19 H 0.084 0.916 20 C -0.132 4.132 21 N -0.530 5.530 22 Si 0.731 3.269 23 H -0.200 1.200 24 H -0.211 1.211 25 H -0.200 1.200 26 C -0.008 4.008 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.104 0.896 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.100 0.900 33 H 0.091 0.909 34 H 0.054 0.946 35 H 0.096 0.904 36 H 0.046 0.954 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.099 0.901 40 H 0.059 0.941 41 H 0.082 0.918 42 H 0.090 0.910 43 H 0.225 0.775 44 H 0.068 0.932 45 H 0.072 0.928 46 H 0.092 0.908 47 H 0.096 0.904 48 H 0.231 0.769 49 H 0.081 0.919 50 H 0.103 0.897 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -24.572 -8.112 1.973 25.951 hybrid contribution 0.517 1.138 0.240 1.272 sum -24.055 -6.974 2.213 25.143 Atomic orbital electron populations 1.22746 0.80935 1.02839 0.99980 1.87880 1.19770 1.28049 1.95424 1.22486 0.94169 0.84675 1.00156 1.21509 0.92259 0.97391 1.04345 1.21983 0.87230 0.96479 1.01145 1.61786 1.05484 1.23232 1.35590 1.22576 1.02033 0.99580 0.89178 1.22259 0.94769 0.90048 1.01143 1.20996 0.90211 0.84793 1.02120 1.45010 1.07616 1.09288 1.79119 1.15466 0.81178 0.83210 0.78241 1.90891 1.62711 1.33894 1.59904 1.47941 1.11514 1.03746 1.73393 1.21919 0.95814 0.84656 0.99408 1.22589 0.94779 0.96758 1.01255 1.19629 0.91000 0.88630 0.79985 1.86097 1.53878 1.75645 1.23532 1.21416 0.92452 1.15224 1.28682 0.91603 1.25076 0.99244 0.94234 0.94616 1.69711 1.24629 1.21288 1.37368 0.86467 0.81225 0.79144 0.80084 1.20037 1.21089 1.20023 1.23118 0.76494 1.00897 1.00246 0.94106 0.94015 0.89564 0.93444 0.93174 0.89970 0.90872 0.94587 0.90439 0.95400 0.90871 0.90474 0.90112 0.94100 0.91830 0.90961 0.77543 0.93170 0.92772 0.90812 0.90438 0.76920 0.91932 0.89675 0.92510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.39 -3.38 10.70 -35.23 -0.38 -3.76 16 3 C 0.06 0.42 5.94 37.16 0.22 0.64 16 4 C -0.12 -0.86 5.52 -26.73 -0.15 -1.01 16 5 C 0.06 0.43 4.96 -3.82 -0.02 0.41 16 6 N -0.54 -4.93 4.76 -242.92 -1.16 -6.08 16 7 C 0.01 0.12 9.13 60.06 0.55 0.67 16 8 C 0.05 0.44 5.07 -3.82 -0.02 0.42 16 9 C 0.14 1.89 5.60 -4.04 -0.02 1.87 16 10 N -0.75 -11.41 5.52 -65.22 -0.36 -11.77 16 11 C 0.72 14.86 8.49 -86.91 -0.74 14.12 16 12 O -0.60 -14.79 16.60 5.29 0.09 -14.70 16 13 N -0.63 -13.17 3.33 -176.25 -0.59 -13.76 16 14 C 0.11 1.82 6.15 -3.06 -0.02 1.80 16 15 C -0.12 -2.27 6.13 -24.89 -0.15 -2.42 16 16 C 0.25 6.00 0.87 -89.63 -0.08 5.92 16 17 O -0.58 -14.84 13.16 -35.23 -0.46 -15.30 16 18 C -0.54 -14.03 8.27 -34.44 -0.28 -14.31 16 19 H 0.07 1.67 7.79 -52.49 -0.41 1.26 16 20 C 0.07 1.88 5.29 -17.82 -0.09 1.78 16 21 N -0.89 -23.96 10.69 55.43 0.59 -23.37 16 22 Si 0.90 20.39 29.54 -169.99 -5.02 15.37 16 23 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 24 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 25 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 26 C 0.11 2.79 5.38 -2.54 -0.01 2.78 16 27 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 28 H 0.04 0.19 8.14 -51.93 -0.42 -0.24 16 29 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.56 6.47 -51.93 -0.34 0.23 16 34 H 0.04 0.24 8.12 -51.93 -0.42 -0.18 16 35 H 0.08 0.51 7.93 -51.93 -0.41 0.10 16 36 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 37 H 0.07 0.57 6.30 -51.93 -0.33 0.24 16 38 H 0.08 0.75 6.47 -51.93 -0.34 0.41 16 39 H 0.08 0.69 7.93 -51.93 -0.41 0.27 16 40 H 0.04 0.37 8.12 -51.93 -0.42 -0.05 16 41 H 0.06 0.91 6.55 -51.93 -0.34 0.57 16 42 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 43 H 0.39 4.86 7.46 -40.82 -0.30 4.55 16 44 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 47 H 0.08 1.43 8.03 -51.93 -0.42 1.01 16 48 H 0.38 10.00 7.56 45.56 0.34 10.34 16 49 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 50 H 0.08 2.35 7.33 -51.93 -0.38 1.97 16 51 H 0.06 1.44 8.03 -51.93 -0.42 1.02 16 LS Contribution 405.39 15.07 6.11 6.11 Total: -1.00 -31.56 405.39 -9.26 -40.82 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: -8.38 Total: 12.48 kcal Atomic # 6 Polarization: 13.67 SS G_CDS: 0.29 Total: 13.97 kcal Atomic # 7 Polarization: -53.47 SS G_CDS: -1.51 Total: -54.98 kcal Atomic # 8 Polarization: -33.01 SS G_CDS: -0.75 Total: -33.76 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -31.56 -9.26 -40.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591968342.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.690 kcal (2) G-P(sol) polarization free energy of solvation -31.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds