Wall clock time and date at job start Tue Mar 31 2020 04:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42902 * 113.99915 * 2 1 4 4 C 1.53006 * 109.46703 * 179.97438 * 3 2 1 5 5 H 1.09007 * 109.46590 * 174.99457 * 4 3 2 6 6 C 1.53001 * 109.47010 * 55.00050 * 4 3 2 7 7 N 1.46491 * 109.47086 * 294.99554 * 4 3 2 8 8 C 1.34783 * 120.00211 * 204.99844 * 7 4 3 9 9 O 1.21540 * 119.99372 * 0.02562 * 8 7 4 10 10 N 1.34774 * 120.00208 * 180.02562 * 8 7 4 11 11 C 1.34771 * 119.99966 * 180.02562 * 10 8 7 12 12 O 1.21234 * 119.99888 * 359.97438 * 11 10 8 13 13 C 1.50696 * 120.00136 * 180.02562 * 11 10 8 14 14 N 1.46901 * 109.47122 * 179.97438 * 13 11 10 15 15 C 1.47443 * 111.00071 * 69.87396 * 14 13 11 16 16 C 1.54316 * 107.23363 * 123.26027 * 15 14 13 17 17 C 1.55141 * 103.02148 * 22.27736 * 16 15 14 18 18 O 1.42896 * 110.98596 * 82.48140 * 17 16 15 19 19 C 1.50703 * 110.98969 * 206.25466 * 17 16 15 20 20 H 1.08003 * 119.99668 * 116.90942 * 19 17 16 21 21 C 1.37876 * 120.00377 * 296.90594 * 19 17 16 22 22 N 1.31513 * 119.99585 * 5.06120 * 21 19 17 23 23 Si 1.86799 * 120.00143 * 185.06028 * 21 19 17 24 24 H 1.48495 * 109.47273 * 84.99949 * 23 21 19 25 25 H 1.48498 * 109.46883 * 205.00071 * 23 21 19 26 26 H 1.48501 * 109.46842 * 324.99879 * 23 21 19 27 27 C 1.47850 * 110.99830 * 190.71619 * 14 13 11 28 28 H 1.08993 * 109.47302 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47120 * 300.00686 * 1 2 3 30 30 H 1.09005 * 109.46494 * 60.00541 * 1 2 3 31 31 H 1.08997 * 109.47572 * 59.99934 * 3 2 1 32 32 H 1.08999 * 109.47082 * 299.99117 * 3 2 1 33 33 H 1.08998 * 109.47137 * 60.00170 * 6 4 3 34 34 H 1.09000 * 109.46444 * 179.97438 * 6 4 3 35 35 H 1.09000 * 109.47059 * 299.99835 * 6 4 3 36 36 H 0.96999 * 120.00425 * 25.00307 * 7 4 3 37 37 H 0.97006 * 119.99706 * 0.02562 * 10 8 7 38 38 H 1.08996 * 109.47711 * 59.99576 * 13 11 10 39 39 H 1.09007 * 109.47026 * 299.99696 * 13 11 10 40 40 H 1.08999 * 109.88537 * 242.65989 * 15 14 13 41 41 H 1.08991 * 109.89034 * 3.84987 * 15 14 13 42 42 H 1.09001 * 110.71016 * 140.66579 * 16 15 14 43 43 H 1.09001 * 110.70435 * 263.89896 * 16 15 14 44 44 H 0.96697 * 114.00676 * 54.61776 * 18 17 16 45 45 H 0.97004 * 119.99457 * 179.97438 * 22 21 19 46 46 H 1.09002 * 110.37233 * 332.46281 * 27 14 13 47 47 H 1.08993 * 110.37835 * 94.80593 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.9786 2.1765 -0.0890 6 6 3.9790 0.3193 -1.1807 7 7 3.9757 0.5645 1.2527 8 6 5.2196 0.7945 1.7179 9 8 5.9759 1.5169 1.0987 10 7 5.6247 0.2236 2.8696 11 6 6.8683 0.4541 3.3350 12 8 7.6227 1.1746 2.7174 13 6 7.3215 -0.1847 4.6224 14 7 8.7043 0.2197 4.9095 15 6 8.7722 1.6460 5.2768 16 6 9.4349 1.7288 6.6679 17 6 10.2191 0.3935 6.7616 18 8 11.4791 0.4920 6.0947 19 6 10.4029 -0.0251 8.1976 20 1 9.9604 -0.9439 8.5531 21 6 11.1360 0.7649 9.0575 22 7 11.5907 1.9308 8.6531 23 14 11.4834 0.1793 10.7970 24 1 12.6877 -0.6894 10.7956 25 1 11.7201 1.3523 11.6762 26 1 10.3183 -0.5907 11.3019 27 6 9.2708 -0.5792 6.0171 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 1.6887 1.8464 0.8899 32 1 1.6887 1.8463 -0.8901 33 1 3.6515 0.7808 -2.1122 34 1 5.0656 0.2336 -1.1804 35 1 3.5359 -0.6726 -1.0911 36 1 3.3720 -0.0118 1.7470 37 1 5.0211 -0.3532 3.3635 38 1 7.2731 -1.2694 4.5266 39 1 6.6719 0.1375 5.4363 40 1 9.3731 2.1886 4.5470 41 1 7.7674 2.0663 5.3191 42 1 10.1145 2.5794 6.7212 43 1 8.6797 1.7879 7.4517 44 1 12.0287 1.2272 6.3988 45 1 12.1062 2.4867 9.2582 46 1 8.4782 -0.9204 6.6829 47 1 9.8301 -1.4286 5.6250 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592144607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:47:49 Heat of formation + Delta-G solvation = -141.883992 kcal Electronic energy + Delta-G solvation = -28584.054271 eV Core-core repulsion = 24381.906596 eV Total energy + Delta-G solvation = -4202.147675 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 1.90 seconds Orbital eigenvalues (eV) -41.13557 -39.24569 -38.45499 -37.58498 -35.38892 -34.53446 -34.48399 -32.12322 -31.25107 -30.23878 -28.12146 -27.81821 -26.78627 -26.14518 -24.36637 -22.91978 -21.07542 -20.58837 -20.03623 -19.58553 -18.95779 -17.26821 -16.98869 -16.84669 -16.41182 -16.14802 -15.67875 -15.27126 -15.23072 -14.85040 -14.79907 -14.40001 -14.08134 -13.89603 -13.73204 -13.51496 -12.98999 -12.65253 -12.47242 -12.34292 -12.26815 -12.23124 -11.70655 -11.65064 -11.36841 -11.26127 -11.19129 -11.04638 -10.83795 -10.69861 -10.39528 -10.29148 -10.24566 -10.01457 -9.83461 -9.43544 -9.35686 -9.17696 -8.59006 -8.04594 -7.63677 -6.18225 -4.26229 2.23775 2.25450 3.18730 3.24033 3.30874 3.32439 3.33946 3.75198 4.30628 4.33509 4.58155 4.61907 4.74990 4.77370 4.84145 4.91205 5.04399 5.09181 5.17669 5.18311 5.35680 5.42313 5.44118 5.64683 5.71252 5.92406 6.01741 6.08556 6.09691 6.18509 6.19791 6.46513 6.52395 6.57194 6.68529 6.91711 7.09666 7.38758 7.41904 7.51577 7.61254 7.67755 7.84083 8.18486 8.22517 8.34526 8.75039 9.42272 9.52353 10.88730 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.031350 B = 0.002038 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.923028 B =13733.213249 C =14137.776060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.388 6.388 3 C 0.052 3.948 4 C 0.163 3.837 5 H 0.103 0.897 6 C -0.162 4.162 7 N -0.734 5.734 8 C 0.694 3.306 9 O -0.532 6.532 10 N -0.696 5.696 11 C 0.512 3.488 12 O -0.440 6.440 13 C 0.035 3.965 14 N -0.512 5.512 15 C 0.051 3.949 16 C -0.146 4.146 17 C 0.252 3.748 18 O -0.576 6.576 19 C -0.536 4.536 20 H 0.060 0.940 21 C 0.072 3.928 22 N -0.891 5.891 23 Si 0.899 3.101 24 H -0.278 1.278 25 H -0.287 1.287 26 H -0.275 1.275 27 C 0.059 3.941 28 H 0.087 0.913 29 H 0.042 0.958 30 H 0.042 0.958 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.401 0.599 37 H 0.407 0.593 38 H 0.103 0.897 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.031 0.969 42 H 0.079 0.921 43 H 0.055 0.945 44 H 0.375 0.625 45 H 0.266 0.734 46 H 0.049 0.951 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.939 -3.435 -13.553 27.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.307 6.307 3 C -0.025 4.025 4 C 0.058 3.942 5 H 0.120 0.880 6 C -0.220 4.220 7 N -0.392 5.392 8 C 0.394 3.606 9 O -0.404 6.404 10 N -0.363 5.363 11 C 0.297 3.703 12 O -0.305 6.305 13 C -0.097 4.097 14 N -0.236 5.236 15 C -0.076 4.076 16 C -0.185 4.185 17 C 0.212 3.788 18 O -0.383 6.383 19 C -0.574 4.574 20 H 0.079 0.921 21 C -0.130 4.130 22 N -0.530 5.530 23 Si 0.727 3.273 24 H -0.204 1.204 25 H -0.212 1.212 26 H -0.200 1.200 27 C -0.068 4.068 28 H 0.105 0.895 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.235 0.765 37 H 0.241 0.759 38 H 0.121 0.879 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.050 0.950 42 H 0.098 0.902 43 H 0.074 0.926 44 H 0.223 0.777 45 H 0.076 0.924 46 H 0.067 0.933 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -22.438 -2.894 -15.239 27.277 hybrid contribution -1.178 -0.015 2.546 2.805 sum -23.616 -2.909 -12.693 26.968 Atomic orbital electron populations 1.22762 0.80722 1.02965 1.00106 1.87888 1.19883 1.27445 1.95450 1.22892 0.92841 0.85356 1.01457 1.20935 0.91393 0.98454 0.83448 0.87963 1.22106 1.02321 1.00744 0.96822 1.45280 1.13754 1.53876 1.26325 1.16183 0.82519 0.80921 0.80944 1.91071 1.52958 1.38597 1.57727 1.44313 1.17387 1.50138 1.24450 1.21111 0.79759 0.81816 0.87628 1.90831 1.51156 1.31992 1.56487 1.22159 0.93404 1.01051 0.93072 1.63395 1.13573 1.04866 1.41794 1.22844 0.98642 0.87946 0.98201 1.23334 0.99844 1.02399 0.92915 1.19513 0.81299 0.88930 0.89058 1.86175 1.30804 1.55604 1.65693 1.21483 1.33839 1.07736 0.94369 0.92128 1.24995 0.94870 0.94331 0.98853 1.69790 1.36358 1.10012 1.36856 0.86504 0.78879 0.78274 0.83653 1.20363 1.21240 1.19962 1.23060 0.96678 0.97189 0.89825 0.89465 0.93963 0.93969 0.92386 0.91455 0.91759 0.91827 0.91483 0.76472 0.75903 0.87858 0.91633 0.90952 0.95045 0.90229 0.92584 0.77684 0.92421 0.93254 0.90721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 11.01 101.05 1.11 1.23 16 2 O -0.39 -2.43 9.55 -35.23 -0.34 -2.77 16 3 C 0.05 0.29 5.68 37.16 0.21 0.50 16 4 C 0.16 1.33 2.98 -67.93 -0.20 1.13 16 5 H 0.10 0.97 7.58 -51.92 -0.39 0.58 16 6 C -0.16 -1.37 9.29 37.16 0.35 -1.02 16 7 N -0.73 -6.43 5.06 -58.68 -0.30 -6.73 16 8 C 0.69 9.17 8.47 -86.91 -0.74 8.43 16 9 O -0.53 -9.91 14.41 -18.47 -0.27 -10.17 16 10 N -0.70 -7.93 5.24 -15.78 -0.08 -8.01 16 11 C 0.51 8.15 7.42 -10.99 -0.08 8.07 16 12 O -0.44 -9.46 13.94 -18.21 -0.25 -9.71 16 13 C 0.04 0.52 5.03 -4.98 -0.03 0.50 16 14 N -0.51 -10.27 4.85 -232.70 -1.13 -11.39 16 15 C 0.05 1.08 5.65 -2.84 -0.02 1.07 16 16 C -0.15 -3.42 5.34 -24.91 -0.13 -3.55 16 17 C 0.25 6.29 0.86 -89.63 -0.08 6.22 16 18 O -0.58 -15.40 13.14 -35.23 -0.46 -15.86 16 19 C -0.54 -14.23 8.25 -34.44 -0.28 -14.52 16 20 H 0.06 1.58 7.79 -52.48 -0.41 1.17 16 21 C 0.07 1.91 5.32 -17.82 -0.09 1.82 16 22 N -0.89 -23.96 10.85 55.43 0.60 -23.36 16 23 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 16 24 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 25 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 26 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 27 C 0.06 1.26 5.86 -2.30 -0.01 1.25 16 28 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.04 0.13 8.14 -51.93 -0.42 -0.29 16 30 H 0.04 0.13 8.14 -51.93 -0.42 -0.29 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.56 7.56 -51.93 -0.39 0.17 16 36 H 0.40 2.43 8.40 -40.82 -0.34 2.09 16 37 H 0.41 2.59 8.71 -40.82 -0.36 2.24 16 38 H 0.10 1.23 8.07 -51.93 -0.42 0.81 16 39 H 0.07 0.84 7.96 -51.92 -0.41 0.43 16 40 H 0.07 1.67 8.14 -51.93 -0.42 1.25 16 41 H 0.03 0.61 7.31 -51.93 -0.38 0.23 16 42 H 0.08 2.00 7.47 -51.93 -0.39 1.61 16 43 H 0.06 1.31 8.03 -51.93 -0.42 0.90 16 44 H 0.37 10.00 7.71 45.56 0.35 10.35 16 45 H 0.27 6.86 8.31 -40.82 -0.34 6.53 16 46 H 0.05 0.96 7.70 -51.93 -0.40 0.56 16 47 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 LS Contribution 384.93 15.07 5.80 5.80 Total: -1.00 -35.72 384.93 -8.34 -44.07 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: -6.90 Total: 11.47 kcal Atomic # 6 Polarization: 11.11 SS G_CDS: 0.01 Total: 11.12 kcal Atomic # 7 Polarization: -48.59 SS G_CDS: -0.91 Total: -49.50 kcal Atomic # 8 Polarization: -37.20 SS G_CDS: -1.32 Total: -38.52 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.72 -8.34 -44.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592144607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.819 kcal (2) G-P(sol) polarization free energy of solvation -35.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.90 seconds