Wall clock time and date at job start Tue Mar 31 2020 04:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42902 * 113.99915 * 2 1 4 4 C 1.53006 * 109.46703 * 179.97438 * 3 2 1 5 5 H 1.09007 * 109.46590 * 174.99457 * 4 3 2 6 6 C 1.53001 * 109.47010 * 55.00050 * 4 3 2 7 7 N 1.46491 * 109.47086 * 294.99554 * 4 3 2 8 8 C 1.34783 * 120.00211 * 204.99844 * 7 4 3 9 9 O 1.21540 * 119.99372 * 0.02562 * 8 7 4 10 10 N 1.34774 * 120.00208 * 180.02562 * 8 7 4 11 11 C 1.34771 * 119.99966 * 180.02562 * 10 8 7 12 12 O 1.21234 * 119.99888 * 359.97438 * 11 10 8 13 13 C 1.50696 * 120.00136 * 180.02562 * 11 10 8 14 14 N 1.46901 * 109.47122 * 179.97438 * 13 11 10 15 15 C 1.47443 * 111.00071 * 69.87396 * 14 13 11 16 16 C 1.54316 * 107.23363 * 123.26027 * 15 14 13 17 17 C 1.55141 * 103.02148 * 22.27736 * 16 15 14 18 18 O 1.42896 * 110.98596 * 82.48140 * 17 16 15 19 19 C 1.50703 * 110.98969 * 206.25466 * 17 16 15 20 20 H 1.08003 * 119.99668 * 116.90942 * 19 17 16 21 21 C 1.37876 * 120.00377 * 296.90594 * 19 17 16 22 22 N 1.31513 * 119.99585 * 5.06120 * 21 19 17 23 23 Si 1.86799 * 120.00143 * 185.06028 * 21 19 17 24 24 H 1.48495 * 109.47273 * 84.99949 * 23 21 19 25 25 H 1.48498 * 109.46883 * 205.00071 * 23 21 19 26 26 H 1.48501 * 109.46842 * 324.99879 * 23 21 19 27 27 C 1.47850 * 110.99830 * 190.71619 * 14 13 11 28 28 H 1.08993 * 109.47302 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47120 * 300.00686 * 1 2 3 30 30 H 1.09005 * 109.46494 * 60.00541 * 1 2 3 31 31 H 1.08997 * 109.47572 * 59.99934 * 3 2 1 32 32 H 1.08999 * 109.47082 * 299.99117 * 3 2 1 33 33 H 1.08998 * 109.47137 * 60.00170 * 6 4 3 34 34 H 1.09000 * 109.46444 * 179.97438 * 6 4 3 35 35 H 1.09000 * 109.47059 * 299.99835 * 6 4 3 36 36 H 0.96999 * 120.00425 * 25.00307 * 7 4 3 37 37 H 0.97006 * 119.99706 * 0.02562 * 10 8 7 38 38 H 1.08996 * 109.47711 * 59.99576 * 13 11 10 39 39 H 1.09007 * 109.47026 * 299.99696 * 13 11 10 40 40 H 1.08999 * 109.88537 * 242.65989 * 15 14 13 41 41 H 1.08991 * 109.89034 * 3.84987 * 15 14 13 42 42 H 1.09001 * 110.71016 * 140.66579 * 16 15 14 43 43 H 1.09001 * 110.70435 * 263.89896 * 16 15 14 44 44 H 0.96697 * 114.00676 * 54.61776 * 18 17 16 45 45 H 0.97004 * 119.99457 * 179.97438 * 22 21 19 46 46 H 1.09002 * 110.37233 * 332.46281 * 27 14 13 47 47 H 1.08993 * 110.37835 * 94.80593 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.9786 2.1765 -0.0890 6 6 3.9790 0.3193 -1.1807 7 7 3.9757 0.5645 1.2527 8 6 5.2196 0.7945 1.7179 9 8 5.9759 1.5169 1.0987 10 7 5.6247 0.2236 2.8696 11 6 6.8683 0.4541 3.3350 12 8 7.6227 1.1746 2.7174 13 6 7.3215 -0.1847 4.6224 14 7 8.7043 0.2197 4.9095 15 6 8.7722 1.6460 5.2768 16 6 9.4349 1.7288 6.6679 17 6 10.2191 0.3935 6.7616 18 8 11.4791 0.4920 6.0947 19 6 10.4029 -0.0251 8.1976 20 1 9.9604 -0.9439 8.5531 21 6 11.1360 0.7649 9.0575 22 7 11.5907 1.9308 8.6531 23 14 11.4834 0.1793 10.7970 24 1 12.6877 -0.6894 10.7956 25 1 11.7201 1.3523 11.6762 26 1 10.3183 -0.5907 11.3019 27 6 9.2708 -0.5792 6.0171 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 1.6887 1.8464 0.8899 32 1 1.6887 1.8463 -0.8901 33 1 3.6515 0.7808 -2.1122 34 1 5.0656 0.2336 -1.1804 35 1 3.5359 -0.6726 -1.0911 36 1 3.3720 -0.0118 1.7470 37 1 5.0211 -0.3532 3.3635 38 1 7.2731 -1.2694 4.5266 39 1 6.6719 0.1375 5.4363 40 1 9.3731 2.1886 4.5470 41 1 7.7674 2.0663 5.3191 42 1 10.1145 2.5794 6.7212 43 1 8.6797 1.7879 7.4517 44 1 12.0287 1.2272 6.3988 45 1 12.1062 2.4867 9.2582 46 1 8.4782 -0.9204 6.6829 47 1 9.8301 -1.4286 5.6250 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592144607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:47:46 Heat of formation + Delta-G solvation = -172.789723 kcal Electronic energy + Delta-G solvation = -28585.394444 eV Core-core repulsion = 24381.906596 eV Total energy + Delta-G solvation = -4203.487848 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.24737 -40.44339 -39.52472 -38.71438 -36.42403 -36.12145 -35.69120 -34.16585 -32.24018 -31.68464 -29.91204 -28.32812 -28.26012 -26.60873 -26.11028 -24.01769 -22.12937 -21.73675 -21.40231 -21.37431 -19.98480 -18.93606 -18.22037 -17.59319 -17.30064 -16.98513 -16.86386 -16.79464 -16.51213 -16.11480 -16.03371 -15.72347 -15.32179 -15.30285 -14.99366 -14.31388 -14.22000 -14.02673 -13.86324 -13.54462 -13.45630 -13.14085 -13.09628 -12.87316 -12.80619 -12.76508 -12.54990 -12.20630 -12.17968 -12.13937 -12.02854 -11.99998 -11.69977 -11.21105 -11.09927 -10.73290 -10.60294 -10.57100 -10.20158 -10.05378 -9.16977 -8.17333 -6.32798 1.06396 1.27180 1.43290 1.46151 1.53855 2.23550 2.40816 2.74887 2.88096 3.06181 3.20979 3.69033 3.78243 3.98768 4.06331 4.09132 4.15691 4.33933 4.36812 4.39959 4.48650 4.49262 4.52337 4.63052 4.66860 4.74423 4.76638 4.90779 4.92762 4.96113 5.10423 5.12796 5.27098 5.31064 5.41324 5.45927 5.53976 5.56999 5.81772 5.93894 6.16037 6.20407 6.24778 6.61936 6.73438 7.15976 7.36583 7.38307 7.44432 8.88034 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.031350 B = 0.002038 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.923028 B =13733.213249 C =14137.776060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.404 6.404 3 C 0.061 3.939 4 C 0.157 3.843 5 H 0.087 0.913 6 C -0.155 4.155 7 N -0.710 5.710 8 C 0.691 3.309 9 O -0.589 6.589 10 N -0.673 5.673 11 C 0.517 3.483 12 O -0.504 6.504 13 C 0.035 3.965 14 N -0.532 5.532 15 C 0.066 3.934 16 C -0.134 4.134 17 C 0.230 3.770 18 O -0.589 6.589 19 C -0.555 4.555 20 H 0.063 0.937 21 C 0.027 3.973 22 N -0.913 5.913 23 Si 0.961 3.039 24 H -0.280 1.280 25 H -0.285 1.285 26 H -0.264 1.264 27 C 0.071 3.929 28 H 0.094 0.906 29 H 0.050 0.950 30 H 0.049 0.951 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.031 0.969 35 H 0.070 0.930 36 H 0.418 0.582 37 H 0.433 0.567 38 H 0.142 0.858 39 H 0.099 0.901 40 H 0.043 0.957 41 H 0.050 0.950 42 H 0.052 0.948 43 H 0.054 0.946 44 H 0.368 0.632 45 H 0.266 0.734 46 H 0.074 0.926 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.092 -5.081 -12.829 30.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.324 6.324 3 C -0.016 4.016 4 C 0.052 3.948 5 H 0.105 0.895 6 C -0.213 4.213 7 N -0.369 5.369 8 C 0.391 3.609 9 O -0.465 6.465 10 N -0.342 5.342 11 C 0.304 3.696 12 O -0.373 6.373 13 C -0.096 4.096 14 N -0.256 5.256 15 C -0.061 4.061 16 C -0.174 4.174 17 C 0.190 3.810 18 O -0.396 6.396 19 C -0.593 4.593 20 H 0.082 0.918 21 C -0.174 4.174 22 N -0.552 5.552 23 Si 0.787 3.213 24 H -0.206 1.206 25 H -0.211 1.211 26 H -0.189 1.189 27 C -0.056 4.056 28 H 0.112 0.888 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.087 0.913 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.051 0.949 35 H 0.089 0.911 36 H 0.255 0.745 37 H 0.273 0.727 38 H 0.159 0.841 39 H 0.117 0.883 40 H 0.061 0.939 41 H 0.068 0.932 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.216 0.784 45 H 0.075 0.925 46 H 0.092 0.908 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -25.707 -4.611 -14.496 29.871 hybrid contribution -0.286 0.466 2.259 2.324 sum -25.993 -4.145 -12.237 29.027 Atomic orbital electron populations 1.22905 0.79388 1.03758 1.00904 1.87852 1.21303 1.27581 1.95637 1.22796 0.90471 0.85558 1.02819 1.21051 0.93438 0.97483 0.82821 0.89547 1.22036 1.00175 1.01217 0.97892 1.45141 1.12281 1.53140 1.26307 1.16413 0.83168 0.80396 0.80911 1.91047 1.54863 1.41183 1.59381 1.43912 1.16542 1.49738 1.23999 1.21372 0.80243 0.80560 0.87448 1.90829 1.53252 1.34947 1.58316 1.22333 0.90899 1.03176 0.93159 1.63183 1.17511 1.03687 1.41252 1.22570 0.98776 0.89076 0.95714 1.23127 0.99178 1.00823 0.94226 1.19866 0.81174 0.90684 0.89236 1.86171 1.31886 1.55387 1.66134 1.21788 1.34251 1.07889 0.95353 0.91841 1.25749 0.94757 0.94426 1.02483 1.69906 1.36592 1.10747 1.37915 0.85529 0.78715 0.77713 0.79354 1.20556 1.21110 1.18877 1.22911 0.96529 0.96057 0.90119 0.88759 0.93114 0.93227 0.91318 0.89817 0.90132 0.94938 0.91119 0.74464 0.72704 0.84060 0.88321 0.93854 0.93185 0.92915 0.92721 0.78404 0.92488 0.90828 0.91216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 11.01 113.37 1.25 1.38 16 2 O -0.40 -3.97 9.55 -148.98 -1.42 -5.40 16 3 C 0.06 0.53 5.68 71.98 0.41 0.94 16 4 C 0.16 2.39 2.98 45.00 0.13 2.52 16 5 H 0.09 1.64 7.58 -2.38 -0.02 1.62 16 6 C -0.15 -2.52 9.29 71.98 0.67 -1.86 16 7 N -0.71 -11.27 5.06 -457.85 -2.32 -13.58 16 8 C 0.69 17.69 8.47 179.05 1.52 19.21 16 9 O -0.59 -22.53 14.41 18.92 0.27 -22.26 16 10 N -0.67 -13.91 5.24 -440.54 -2.31 -16.22 16 11 C 0.52 15.72 7.42 87.66 0.65 16.37 16 12 O -0.50 -22.01 13.94 19.88 0.28 -21.73 16 13 C 0.04 0.93 5.03 85.56 0.43 1.37 16 14 N -0.53 -20.66 4.85 -890.11 -4.32 -24.98 16 15 C 0.07 2.83 5.65 86.65 0.49 3.32 16 16 C -0.13 -6.37 5.34 31.77 0.17 -6.20 16 17 C 0.23 11.51 0.86 -10.15 -0.01 11.50 16 18 O -0.59 -32.33 13.14 -148.98 -1.96 -34.29 16 19 C -0.55 -29.20 8.25 25.60 0.21 -28.99 16 20 H 0.06 3.22 7.79 -2.91 -0.02 3.20 16 21 C 0.03 1.40 5.32 84.65 0.45 1.85 16 22 N -0.91 -49.74 10.85 21.45 0.23 -49.51 16 23 Si 0.96 41.85 29.54 68.60 2.03 43.87 16 24 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 25 H -0.29 -12.27 7.11 99.48 0.71 -11.56 16 26 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 27 C 0.07 2.90 5.86 86.77 0.51 3.40 16 28 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 29 H 0.05 0.17 8.14 -2.39 -0.02 0.15 16 30 H 0.05 0.18 8.14 -2.38 -0.02 0.16 16 31 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.07 1.09 7.56 -2.39 -0.02 1.07 16 36 H 0.42 3.86 8.40 -92.71 -0.78 3.08 16 37 H 0.43 3.91 8.71 -92.70 -0.81 3.10 16 38 H 0.14 2.70 8.07 -2.39 -0.02 2.68 16 39 H 0.10 2.06 7.96 -2.38 -0.02 2.04 16 40 H 0.04 2.08 8.14 -2.39 -0.02 2.06 16 41 H 0.05 1.90 7.31 -2.39 -0.02 1.88 16 42 H 0.05 2.74 7.47 -2.39 -0.02 2.72 16 43 H 0.05 2.55 8.03 -2.39 -0.02 2.53 16 44 H 0.37 20.52 7.71 -74.06 -0.57 19.95 16 45 H 0.27 13.89 8.31 -92.70 -0.77 13.12 16 46 H 0.07 2.63 7.70 -2.39 -0.02 2.61 16 47 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 Total: -1.00 -81.00 384.93 -3.79 -84.79 By element: Atomic # 1 Polarization: 35.67 SS G_CDS: -1.15 Total: 34.51 kcal Atomic # 6 Polarization: 17.92 SS G_CDS: 6.88 Total: 24.80 kcal Atomic # 7 Polarization: -95.59 SS G_CDS: -8.71 Total: -104.30 kcal Atomic # 8 Polarization: -80.84 SS G_CDS: -2.83 Total: -83.68 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.87 kcal Total: -81.00 -3.79 -84.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592144607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.001 kcal (2) G-P(sol) polarization free energy of solvation -80.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds