Wall clock time and date at job start Tue Mar 31 2020 04:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 114.00112 * 2 1 4 4 C 1.52993 * 109.47212 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.47275 * 175.00533 * 4 3 2 6 6 C 1.52998 * 109.47099 * 55.00425 * 4 3 2 7 7 N 1.46504 * 109.47139 * 295.00262 * 4 3 2 8 8 C 1.34778 * 119.99607 * 204.99794 * 7 4 3 9 9 O 1.21532 * 120.00399 * 0.02562 * 8 7 4 10 10 N 1.34779 * 119.99621 * 180.02562 * 8 7 4 11 11 C 1.34774 * 119.99962 * 180.02562 * 10 8 7 12 12 O 1.21237 * 119.99906 * 359.97438 * 11 10 8 13 13 C 1.50698 * 120.00217 * 180.02562 * 11 10 8 14 14 N 1.46894 * 109.47477 * 179.97438 * 13 11 10 15 15 C 1.48533 * 110.99907 * 52.60508 * 14 13 11 16 16 C 1.54941 * 103.22885 * 159.72628 * 15 14 13 17 17 C 1.54598 * 102.91827 * 322.57695 * 16 15 14 18 18 O 1.42894 * 110.31554 * 263.04766 * 17 16 15 19 19 C 1.50704 * 110.30549 * 140.87095 * 17 16 15 20 20 H 1.08000 * 120.00147 * 3.73132 * 19 17 16 21 21 C 1.37875 * 120.00082 * 183.71834 * 19 17 16 22 22 N 1.31509 * 120.00396 * 186.05434 * 21 19 17 23 23 Si 1.86810 * 119.99953 * 6.05748 * 21 19 17 24 24 H 1.48496 * 109.46904 * 84.76992 * 23 21 19 25 25 H 1.48498 * 109.47067 * 204.77326 * 23 21 19 26 26 H 1.48502 * 109.46922 * 324.77149 * 23 21 19 27 27 C 1.47908 * 111.00289 * 169.99944 * 14 13 11 28 28 H 1.09003 * 109.47147 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47012 * 299.99420 * 1 2 3 30 30 H 1.09000 * 109.47351 * 59.99528 * 1 2 3 31 31 H 1.09005 * 109.46665 * 60.00054 * 3 2 1 32 32 H 1.09001 * 109.46802 * 300.00855 * 3 2 1 33 33 H 1.09005 * 109.47038 * 299.99418 * 6 4 3 34 34 H 1.09003 * 109.47119 * 179.97438 * 6 4 3 35 35 H 1.08995 * 109.47610 * 59.99862 * 6 4 3 36 36 H 0.96996 * 120.00297 * 25.00309 * 7 4 3 37 37 H 0.96999 * 119.99906 * 359.97438 * 10 8 7 38 38 H 1.09004 * 109.47201 * 299.99635 * 13 11 10 39 39 H 1.09004 * 109.47164 * 59.99503 * 13 11 10 40 40 H 1.09004 * 110.66617 * 278.15508 * 15 14 13 41 41 H 1.08995 * 110.66893 * 41.28654 * 15 14 13 42 42 H 1.09003 * 110.71945 * 204.22820 * 16 15 14 43 43 H 1.09000 * 110.88248 * 81.01129 * 16 15 14 44 44 H 0.96705 * 113.99557 * 295.71562 * 18 17 16 45 45 H 0.97000 * 120.00627 * 180.02562 * 22 21 19 46 46 H 1.08997 * 109.91328 * 333.50806 * 27 14 13 47 47 H 1.08997 * 109.91703 * 94.60590 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.9785 2.1766 -0.0901 6 6 3.9780 0.3199 -1.1827 7 7 3.9767 0.5639 1.2509 8 6 5.2209 0.7939 1.7150 9 8 5.9767 1.5165 1.0957 10 7 5.6270 0.2224 2.8661 11 6 6.8710 0.4527 3.3306 12 8 7.6250 1.1736 2.7127 13 6 7.3254 -0.1867 4.6173 14 7 8.7083 0.2176 4.9035 15 6 8.8492 1.6958 4.8663 16 6 10.1456 1.9489 5.6762 17 6 10.0604 0.8943 6.8034 18 8 9.5252 1.4803 7.9916 19 6 11.4219 0.3082 7.0752 20 1 12.2871 0.6861 6.5507 21 6 11.5632 -0.7103 7.9937 22 7 12.7624 -1.1408 8.3191 23 14 10.0509 -1.4790 8.7759 24 1 9.5188 -2.5414 7.8853 25 1 10.4185 -2.0707 10.0874 26 1 9.0132 -0.4359 8.9769 27 6 9.1087 -0.1913 6.2674 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.6886 1.8464 0.8900 32 1 1.6885 1.8464 -0.8899 33 1 3.5351 -0.6720 -1.0931 34 1 5.0647 0.2342 -1.1834 35 1 3.6498 0.7817 -2.1138 36 1 3.3734 -0.0126 1.7454 37 1 5.0237 -0.3541 3.3606 38 1 6.6764 0.1351 5.4319 39 1 7.2768 -1.2714 4.5210 40 1 8.9622 2.0457 3.8402 41 1 7.9961 2.1758 5.3458 42 1 10.1507 2.9570 6.0908 43 1 11.0282 1.7829 5.0585 44 1 10.0826 2.1716 8.3747 45 1 12.8618 -1.8576 8.9650 46 1 8.2289 -0.2625 6.9070 47 1 9.6203 -1.1531 6.2315 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592144608.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:47:56 Heat of formation + Delta-G solvation = -126.724807 kcal Electronic energy + Delta-G solvation = -28864.323684 eV Core-core repulsion = 24662.833360 eV Total energy + Delta-G solvation = -4201.490324 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.27439 -39.43108 -38.61258 -37.75924 -35.48996 -34.82494 -34.62761 -32.31921 -31.38094 -30.68287 -28.31412 -27.85497 -26.96975 -26.18509 -24.12220 -22.98196 -21.28222 -20.84504 -20.51373 -19.60347 -19.08395 -17.35719 -17.06064 -16.95512 -16.48043 -16.22664 -15.79718 -15.46765 -15.39033 -15.13230 -14.77632 -14.52844 -14.32903 -13.86369 -13.74258 -13.42038 -13.01283 -12.99318 -12.73713 -12.63340 -12.48214 -12.31374 -11.86229 -11.85959 -11.68239 -11.51043 -11.41135 -11.00393 -10.87910 -10.67351 -10.37677 -10.27958 -10.15375 -10.08460 -9.95302 -9.43311 -9.38588 -8.95378 -8.64018 -8.32353 -7.93880 -6.12861 -4.21050 2.10063 2.14698 3.13077 3.24379 3.30470 3.41469 3.60142 3.66052 4.28833 4.42087 4.47444 4.53873 4.57235 4.73805 4.80889 4.87699 4.99687 5.13434 5.15220 5.16660 5.23434 5.31398 5.37845 5.45922 5.59482 5.73654 5.88129 5.94734 5.98743 6.04075 6.10464 6.13326 6.34387 6.37771 6.53280 6.62262 6.81532 6.98218 7.11841 7.30162 7.41750 7.51711 7.63237 8.08325 8.24591 8.30704 8.86243 9.01561 9.51155 10.98155 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.026736 B = 0.002295 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.024883 B =12199.155992 C =12653.017346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.388 6.388 3 C 0.052 3.948 4 C 0.163 3.837 5 H 0.103 0.897 6 C -0.162 4.162 7 N -0.734 5.734 8 C 0.695 3.305 9 O -0.531 6.531 10 N -0.694 5.694 11 C 0.516 3.484 12 O -0.444 6.444 13 C 0.028 3.972 14 N -0.495 5.495 15 C 0.032 3.968 16 C -0.135 4.135 17 C 0.211 3.789 18 O -0.583 6.583 19 C -0.542 4.542 20 H 0.078 0.922 21 C 0.083 3.917 22 N -0.889 5.889 23 Si 0.870 3.130 24 H -0.283 1.283 25 H -0.298 1.298 26 H -0.231 1.231 27 C 0.044 3.956 28 H 0.087 0.913 29 H 0.042 0.958 30 H 0.042 0.958 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.401 0.599 37 H 0.408 0.592 38 H 0.067 0.933 39 H 0.109 0.891 40 H 0.100 0.900 41 H 0.030 0.970 42 H 0.060 0.940 43 H 0.078 0.922 44 H 0.365 0.635 45 H 0.265 0.735 46 H 0.037 0.963 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.239 1.871 -13.970 30.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.307 6.307 3 C -0.026 4.026 4 C 0.058 3.942 5 H 0.121 0.879 6 C -0.220 4.220 7 N -0.392 5.392 8 C 0.395 3.605 9 O -0.403 6.403 10 N -0.361 5.361 11 C 0.301 3.699 12 O -0.310 6.310 13 C -0.104 4.104 14 N -0.220 5.220 15 C -0.095 4.095 16 C -0.173 4.173 17 C 0.172 3.828 18 O -0.389 6.389 19 C -0.579 4.579 20 H 0.096 0.904 21 C -0.121 4.121 22 N -0.526 5.526 23 Si 0.697 3.303 24 H -0.210 1.210 25 H -0.226 1.226 26 H -0.154 1.154 27 C -0.083 4.083 28 H 0.106 0.894 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.236 0.764 37 H 0.242 0.758 38 H 0.085 0.915 39 H 0.126 0.874 40 H 0.118 0.882 41 H 0.048 0.952 42 H 0.079 0.921 43 H 0.096 0.904 44 H 0.212 0.788 45 H 0.075 0.925 46 H 0.056 0.944 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -25.964 2.063 -15.348 30.232 hybrid contribution -1.760 -0.368 1.693 2.470 sum -27.724 1.695 -13.655 30.950 Atomic orbital electron populations 1.22766 0.80683 1.02993 1.00114 1.87888 1.19916 1.27414 1.95451 1.22890 0.92803 0.85390 1.01478 1.20945 0.91430 0.98436 0.83402 0.87938 1.22108 1.02332 1.00771 0.96811 1.45282 1.13680 1.53792 1.26399 1.16153 0.82570 0.80914 0.80864 1.91069 1.52984 1.38565 1.57639 1.44262 1.17208 1.50066 1.24538 1.20962 0.79871 0.81484 0.87547 1.90784 1.51109 1.32508 1.56600 1.22303 0.93045 1.01873 0.93154 1.64835 1.16517 1.12998 1.27656 1.23475 0.97253 0.87062 1.01734 1.23080 0.97165 0.98754 0.98304 1.19823 0.91975 0.88981 0.82069 1.86437 1.51933 1.56642 1.43906 1.21366 0.92326 1.19672 1.24578 0.90418 1.25015 0.95926 0.95959 0.95190 1.69940 1.22237 1.27834 1.32629 0.87116 0.85290 0.79862 0.77984 1.20958 1.22558 1.15433 1.23353 0.97915 1.00747 0.86276 0.89446 0.93964 0.93941 0.92389 0.91422 0.91454 0.91814 0.91711 0.76420 0.75761 0.91481 0.87357 0.88204 0.95184 0.92129 0.90359 0.78760 0.92545 0.94436 0.88861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.11 11.01 101.05 1.11 1.23 16 2 O -0.39 -2.34 9.55 -35.23 -0.34 -2.67 16 3 C 0.05 0.27 5.68 37.15 0.21 0.48 16 4 C 0.16 1.26 2.98 -67.93 -0.20 1.05 16 5 H 0.10 0.92 7.58 -51.93 -0.39 0.52 16 6 C -0.16 -1.32 9.29 37.16 0.35 -0.97 16 7 N -0.73 -6.07 5.06 -58.69 -0.30 -6.37 16 8 C 0.69 8.70 8.47 -86.92 -0.74 7.97 16 9 O -0.53 -9.41 14.41 -18.47 -0.27 -9.68 16 10 N -0.69 -7.48 5.24 -15.78 -0.08 -7.57 16 11 C 0.52 7.77 7.48 -10.99 -0.08 7.69 16 12 O -0.44 -8.83 11.92 -18.21 -0.22 -9.04 16 13 C 0.03 0.41 5.52 -4.98 -0.03 0.38 16 14 N -0.49 -9.73 5.26 -231.89 -1.22 -10.95 16 15 C 0.03 0.63 5.30 -1.90 -0.01 0.62 16 16 C -0.13 -2.85 6.34 -24.87 -0.16 -3.01 16 17 C 0.21 4.97 0.84 -90.41 -0.08 4.89 16 18 O -0.58 -13.16 10.45 -35.23 -0.37 -13.53 16 19 C -0.54 -15.04 8.67 -34.44 -0.30 -15.34 16 20 H 0.08 2.36 7.82 -52.49 -0.41 1.95 16 21 C 0.08 2.37 5.39 -17.82 -0.10 2.28 16 22 N -0.89 -26.95 13.96 55.43 0.77 -26.17 16 23 Si 0.87 21.43 23.85 -169.99 -4.05 17.37 16 24 H -0.28 -6.73 6.94 56.52 0.39 -6.33 16 25 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 26 H -0.23 -5.56 5.42 56.52 0.31 -5.26 16 27 C 0.04 0.97 4.11 -2.75 -0.01 0.96 16 28 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.04 0.12 8.14 -51.93 -0.42 -0.30 16 30 H 0.04 0.13 8.14 -51.93 -0.42 -0.30 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 32 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.07 0.55 7.56 -51.93 -0.39 0.16 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.40 2.28 8.40 -40.82 -0.34 1.94 16 37 H 0.41 2.43 8.71 -40.82 -0.36 2.08 16 38 H 0.07 0.86 7.81 -51.93 -0.41 0.45 16 39 H 0.11 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.10 2.06 5.97 -51.93 -0.31 1.75 16 41 H 0.03 0.56 8.02 -51.93 -0.42 0.15 16 42 H 0.06 1.16 8.08 -51.93 -0.42 0.74 16 43 H 0.08 1.74 7.70 -51.93 -0.40 1.34 16 44 H 0.37 7.25 9.07 45.56 0.41 7.67 16 45 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 46 H 0.04 0.79 6.53 -51.93 -0.34 0.45 16 47 H 0.09 2.22 5.80 -51.93 -0.30 1.92 16 LS Contribution 372.72 15.07 5.62 5.62 Total: -1.00 -37.84 372.72 -7.17 -45.01 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -6.69 Total: 9.75 kcal Atomic # 6 Polarization: 8.26 SS G_CDS: -0.03 Total: 8.23 kcal Atomic # 7 Polarization: -50.24 SS G_CDS: -0.83 Total: -51.06 kcal Atomic # 8 Polarization: -33.73 SS G_CDS: -1.19 Total: -34.92 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.05 Total: 17.37 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -37.84 -7.17 -45.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592144608.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.710 kcal (2) G-P(sol) polarization free energy of solvation -37.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds