Wall clock time and date at job start Tue Mar 31 2020 04:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42901 * 113.99862 * 2 1 4 4 C 1.53007 * 109.46999 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.47140 * 185.00358 * 4 3 2 6 6 C 1.53005 * 109.46808 * 305.00092 * 4 3 2 7 7 N 1.46491 * 109.47402 * 64.99826 * 4 3 2 8 8 C 1.34783 * 120.00211 * 154.99747 * 7 4 3 9 9 O 1.21540 * 119.99372 * 0.02562 * 8 7 4 10 10 N 1.34774 * 120.00208 * 180.02562 * 8 7 4 11 11 C 1.34771 * 119.99966 * 180.02562 * 10 8 7 12 12 O 1.21234 * 119.99888 * 359.97438 * 11 10 8 13 13 C 1.50696 * 120.00136 * 180.02562 * 11 10 8 14 14 N 1.46901 * 109.47122 * 179.97438 * 13 11 10 15 15 C 1.47443 * 111.00071 * 69.87396 * 14 13 11 16 16 C 1.54316 * 107.23363 * 123.26027 * 15 14 13 17 17 C 1.55141 * 103.02148 * 22.27736 * 16 15 14 18 18 O 1.42896 * 110.98596 * 82.48140 * 17 16 15 19 19 C 1.50703 * 110.98969 * 206.25466 * 17 16 15 20 20 H 1.08003 * 119.99668 * 116.90942 * 19 17 16 21 21 C 1.37876 * 120.00377 * 296.90594 * 19 17 16 22 22 N 1.31513 * 119.99585 * 5.06120 * 21 19 17 23 23 Si 1.86799 * 120.00143 * 185.06028 * 21 19 17 24 24 H 1.48495 * 109.47273 * 84.99949 * 23 21 19 25 25 H 1.48498 * 109.46883 * 205.00071 * 23 21 19 26 26 H 1.48501 * 109.46842 * 324.99879 * 23 21 19 27 27 C 1.47850 * 110.99830 * 190.71619 * 14 13 11 28 28 H 1.08997 * 109.47402 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47057 * 299.99584 * 1 2 3 30 30 H 1.08996 * 109.47469 * 59.99371 * 1 2 3 31 31 H 1.08997 * 109.47018 * 60.00654 * 3 2 1 32 32 H 1.08995 * 109.47517 * 300.00078 * 3 2 1 33 33 H 1.08998 * 109.47053 * 60.00213 * 6 4 3 34 34 H 1.08998 * 109.46926 * 180.02562 * 6 4 3 35 35 H 1.09003 * 109.46826 * 300.00127 * 6 4 3 36 36 H 0.96999 * 120.00425 * 335.00209 * 7 4 3 37 37 H 0.97006 * 119.99706 * 0.02562 * 10 8 7 38 38 H 1.08996 * 109.47711 * 59.99576 * 13 11 10 39 39 H 1.09007 * 109.47026 * 299.99696 * 13 11 10 40 40 H 1.08999 * 109.88537 * 242.65989 * 15 14 13 41 41 H 1.08991 * 109.89034 * 3.84987 * 15 14 13 42 42 H 1.09001 * 110.71016 * 140.66579 * 16 15 14 43 43 H 1.09001 * 110.70435 * 263.89896 * 16 15 14 44 44 H 0.96697 * 114.00676 * 54.61776 * 18 17 16 45 45 H 0.97004 * 119.99457 * 179.97438 * 22 21 19 46 46 H 1.09002 * 110.37233 * 332.46281 * 27 14 13 47 47 H 1.08993 * 110.37835 * 94.80593 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.9785 2.1765 0.0890 6 6 3.9789 0.3193 1.1807 7 7 3.9757 0.5644 -1.2526 8 6 5.2196 0.7946 -1.7178 9 8 5.9761 1.5165 -1.0983 10 7 5.6244 0.2244 -2.8700 11 6 6.8684 0.4542 -3.3348 12 8 7.6230 1.1742 -2.7169 13 6 7.3209 -0.1829 -4.6233 14 7 8.7038 0.2214 -4.9102 15 6 9.6437 -0.3978 -3.9577 16 6 10.6788 -1.1883 -4.7853 17 6 10.6044 -0.5097 -6.1785 18 8 11.4007 0.6763 -6.2132 19 6 11.0175 -1.4659 -7.2675 20 1 10.3078 -1.7580 -8.0275 21 6 12.3014 -1.9678 -7.2938 22 7 13.1354 -1.6919 -6.3152 23 14 12.8561 -3.0398 -8.7195 24 1 13.3227 -2.1776 -9.8349 25 1 13.9676 -3.9185 -8.2748 26 1 11.7191 -3.8755 -9.1820 27 6 9.0966 -0.1698 -6.2809 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 3.5359 -0.6725 1.0911 34 1 5.0655 0.2336 1.1805 35 1 3.6513 0.7808 2.1123 36 1 3.3720 -0.0119 -1.7469 37 1 5.0204 -0.3514 -3.3646 38 1 6.6718 0.1414 -5.4367 39 1 7.2712 -1.2677 -4.5293 40 1 10.1461 0.3757 -3.3769 41 1 9.1062 -1.0737 -3.2928 42 1 11.6759 -1.0827 -4.3579 43 1 10.3967 -2.2390 -4.8530 44 1 12.3223 0.5391 -5.9543 45 1 14.0386 -2.0453 -6.3335 46 1 8.5314 -1.0446 -6.6025 47 1 8.9404 0.6588 -6.9715 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592144609.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:48:01 Heat of formation + Delta-G solvation = -141.864511 kcal Electronic energy + Delta-G solvation = -28593.121738 eV Core-core repulsion = 24390.974907 eV Total energy + Delta-G solvation = -4202.146830 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.13543 -39.24556 -38.45474 -37.58432 -35.38904 -34.53366 -34.48317 -32.12092 -31.25065 -30.23695 -28.11888 -27.81800 -26.78489 -26.14561 -24.36452 -22.91874 -21.07688 -20.58717 -20.03280 -19.58368 -18.95778 -17.27858 -16.98086 -16.84120 -16.42217 -16.11778 -15.71907 -15.28176 -15.17842 -14.86070 -14.81714 -14.40312 -14.04289 -13.93033 -13.70869 -13.52373 -12.98617 -12.65133 -12.49792 -12.31403 -12.27132 -12.22916 -11.70921 -11.64648 -11.36727 -11.26207 -11.18946 -11.04482 -10.83863 -10.69306 -10.39294 -10.28851 -10.24616 -10.01429 -9.83116 -9.43549 -9.35662 -9.17485 -8.58767 -8.04389 -7.63621 -6.17946 -4.25972 2.23536 2.25726 3.18654 3.24279 3.31116 3.32666 3.34043 3.75172 4.30865 4.33484 4.58139 4.61912 4.75073 4.77302 4.83959 4.91118 5.04418 5.09439 5.17695 5.18285 5.35431 5.42374 5.44430 5.64812 5.71603 5.92607 6.01961 6.08745 6.10044 6.18738 6.19854 6.46531 6.52827 6.57261 6.68613 6.91971 7.10011 7.39069 7.41965 7.51898 7.61477 7.67854 7.84348 8.18636 8.22572 8.34535 8.75272 9.42515 9.52465 10.89011 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.031110 B = 0.002039 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.818239 B =13726.029007 C =14053.516623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.388 6.388 3 C 0.052 3.948 4 C 0.163 3.837 5 H 0.103 0.897 6 C -0.162 4.162 7 N -0.734 5.734 8 C 0.694 3.306 9 O -0.532 6.532 10 N -0.696 5.696 11 C 0.512 3.488 12 O -0.440 6.440 13 C 0.035 3.965 14 N -0.512 5.512 15 C 0.051 3.949 16 C -0.146 4.146 17 C 0.252 3.748 18 O -0.576 6.576 19 C -0.536 4.536 20 H 0.060 0.940 21 C 0.072 3.928 22 N -0.891 5.891 23 Si 0.899 3.101 24 H -0.278 1.278 25 H -0.287 1.287 26 H -0.275 1.275 27 C 0.059 3.941 28 H 0.087 0.913 29 H 0.042 0.958 30 H 0.042 0.958 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.401 0.599 37 H 0.407 0.593 38 H 0.103 0.897 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.031 0.969 42 H 0.079 0.921 43 H 0.055 0.945 44 H 0.375 0.625 45 H 0.266 0.734 46 H 0.049 0.951 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.667 0.617 10.939 27.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.307 6.307 3 C -0.025 4.025 4 C 0.058 3.942 5 H 0.120 0.880 6 C -0.220 4.220 7 N -0.392 5.392 8 C 0.394 3.606 9 O -0.404 6.404 10 N -0.363 5.363 11 C 0.297 3.703 12 O -0.305 6.305 13 C -0.097 4.097 14 N -0.236 5.236 15 C -0.076 4.076 16 C -0.185 4.185 17 C 0.212 3.788 18 O -0.383 6.383 19 C -0.574 4.574 20 H 0.079 0.921 21 C -0.130 4.130 22 N -0.530 5.530 23 Si 0.727 3.273 24 H -0.204 1.204 25 H -0.212 1.212 26 H -0.200 1.200 27 C -0.068 4.068 28 H 0.105 0.895 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.235 0.765 37 H 0.241 0.759 38 H 0.121 0.879 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.050 0.950 42 H 0.098 0.902 43 H 0.074 0.926 44 H 0.223 0.777 45 H 0.076 0.924 46 H 0.067 0.933 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -24.687 2.382 11.835 27.481 hybrid contribution -0.222 -2.257 -1.098 2.520 sum -24.909 0.124 10.737 27.125 Atomic orbital electron populations 1.22761 0.80725 1.02968 1.00098 1.87888 1.19882 1.27445 1.95446 1.22890 0.92837 0.85357 1.01452 1.20935 0.91396 0.98449 0.83445 0.87951 1.22109 1.02319 1.00755 0.96834 1.45280 1.13759 1.53866 1.26331 1.16183 0.82525 0.80905 0.80954 1.91071 1.52943 1.38605 1.57733 1.44314 1.17408 1.50179 1.24388 1.21111 0.79893 0.81810 0.87500 1.90831 1.51368 1.31812 1.56455 1.22159 0.95042 0.98322 0.94169 1.63397 0.98601 1.57448 1.04185 1.22845 0.94037 0.96561 0.94201 1.23334 0.98690 0.98219 0.98249 1.19513 0.85464 0.82684 0.91137 1.86173 1.25380 1.34984 1.91748 1.21481 0.97438 1.26674 1.11842 0.92132 1.24995 0.96582 0.95679 0.95790 1.69790 1.06614 1.45747 1.30855 0.86503 0.78265 0.80039 0.82503 1.20370 1.21235 1.19961 1.23059 0.97379 0.98507 0.87806 0.89467 0.93971 0.93966 0.91458 0.92381 0.91483 0.91840 0.91752 0.76473 0.75903 0.87879 0.91610 0.90951 0.95021 0.90227 0.92575 0.77681 0.92418 0.93254 0.90734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 11.01 101.05 1.11 1.23 16 2 O -0.39 -2.44 9.55 -35.23 -0.34 -2.78 16 3 C 0.05 0.29 5.68 37.16 0.21 0.50 16 4 C 0.16 1.33 2.98 -67.93 -0.20 1.13 16 5 H 0.10 0.97 7.58 -51.93 -0.39 0.57 16 6 C -0.16 -1.39 9.29 37.16 0.35 -1.04 16 7 N -0.73 -6.43 5.06 -58.68 -0.30 -6.73 16 8 C 0.69 9.17 8.47 -86.91 -0.74 8.43 16 9 O -0.53 -9.91 14.41 -18.47 -0.27 -10.17 16 10 N -0.70 -7.93 5.24 -15.78 -0.08 -8.01 16 11 C 0.51 8.15 7.42 -10.99 -0.08 8.07 16 12 O -0.44 -9.46 13.94 -18.21 -0.25 -9.71 16 13 C 0.04 0.52 5.03 -4.98 -0.03 0.50 16 14 N -0.51 -10.27 4.85 -232.70 -1.13 -11.40 16 15 C 0.05 1.08 5.65 -2.84 -0.02 1.07 16 16 C -0.15 -3.43 5.34 -24.91 -0.13 -3.56 16 17 C 0.25 6.30 0.86 -89.63 -0.08 6.22 16 18 O -0.58 -15.40 13.14 -35.23 -0.46 -15.86 16 19 C -0.54 -14.24 8.25 -34.44 -0.28 -14.53 16 20 H 0.06 1.58 7.79 -52.48 -0.41 1.17 16 21 C 0.07 1.92 5.32 -17.82 -0.09 1.82 16 22 N -0.89 -23.99 10.85 55.43 0.60 -23.39 16 23 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 26 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 27 C 0.06 1.26 5.86 -2.30 -0.01 1.25 16 28 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.04 0.13 8.14 -51.93 -0.42 -0.29 16 30 H 0.04 0.13 8.14 -51.93 -0.42 -0.29 16 31 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.57 7.56 -51.93 -0.39 0.18 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.40 2.43 8.40 -40.82 -0.34 2.09 16 37 H 0.41 2.59 8.71 -40.82 -0.36 2.24 16 38 H 0.10 1.21 8.07 -51.93 -0.42 0.79 16 39 H 0.07 0.85 7.96 -51.92 -0.41 0.43 16 40 H 0.07 1.67 8.14 -51.93 -0.42 1.25 16 41 H 0.03 0.62 7.31 -51.93 -0.38 0.24 16 42 H 0.08 2.00 7.47 -51.93 -0.39 1.61 16 43 H 0.06 1.32 8.03 -51.93 -0.42 0.90 16 44 H 0.37 10.01 7.71 45.56 0.35 10.36 16 45 H 0.27 6.87 8.31 -40.82 -0.34 6.54 16 46 H 0.05 0.96 7.70 -51.93 -0.40 0.56 16 47 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 LS Contribution 384.93 15.07 5.80 5.80 Total: -1.00 -35.75 384.93 -8.34 -44.09 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: -6.90 Total: 11.49 kcal Atomic # 6 Polarization: 11.08 SS G_CDS: 0.01 Total: 11.08 kcal Atomic # 7 Polarization: -48.62 SS G_CDS: -0.91 Total: -49.53 kcal Atomic # 8 Polarization: -37.20 SS G_CDS: -1.32 Total: -38.52 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.75 -8.34 -44.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592144609.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.770 kcal (2) G-P(sol) polarization free energy of solvation -35.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds