Wall clock time and date at job start Tue Mar 31 2020 06:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86797 * 119.99941 * 2 1 4 4 H 1.48499 * 109.47135 * 269.99575 * 3 2 1 5 5 H 1.48494 * 109.47250 * 29.99799 * 3 2 1 6 6 H 1.48503 * 109.47045 * 149.99880 * 3 2 1 7 7 C 1.38953 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99747 * 0.02562 * 7 2 1 9 9 N 1.37090 * 120.00016 * 180.02562 * 7 2 1 10 10 C 1.34777 * 119.99719 * 180.02562 * 9 7 2 11 11 O 1.21290 * 120.00492 * 359.97438 * 10 9 7 12 12 C 1.50709 * 119.99979 * 180.02562 * 10 9 7 13 13 N 1.46502 * 109.47071 * 179.97438 * 12 10 9 14 14 S 1.65593 * 119.99909 * 165.00062 * 13 12 10 15 15 O 1.42101 * 104.27879 * 308.92238 * 14 13 12 16 16 O 1.42098 * 104.27649 * 181.06834 * 14 13 12 17 17 C 1.81407 * 104.45166 * 64.99565 * 14 13 12 18 18 C 1.52998 * 109.47084 * 179.97438 * 17 14 13 19 19 C 1.50699 * 109.47204 * 179.97438 * 18 17 14 20 20 C 1.38250 * 119.97575 * 270.32991 * 19 18 17 21 21 C 1.38194 * 120.02377 * 180.27953 * 20 19 18 22 22 C 1.38460 * 119.97497 * 359.41202 * 21 20 19 23 23 F 1.35105 * 120.02800 * 180.30394 * 22 21 20 24 24 C 1.38467 * 119.94896 * 0.28520 * 22 21 20 25 25 C 1.38197 * 119.97188 * 359.97438 * 24 22 21 26 26 H 0.97003 * 120.00394 * 0.02562 * 1 2 3 27 27 H 0.96992 * 120.00426 * 0.02562 * 9 7 2 28 28 H 1.08997 * 109.46958 * 59.99600 * 12 10 9 29 29 H 1.08999 * 109.46616 * 299.99360 * 12 10 9 30 30 H 0.97004 * 120.00230 * 344.99127 * 13 12 10 31 31 H 1.09000 * 109.46773 * 59.99977 * 17 14 13 32 32 H 1.08995 * 109.46887 * 300.00200 * 17 14 13 33 33 H 1.09007 * 109.46864 * 60.00168 * 18 17 14 34 34 H 1.08994 * 109.47451 * 300.00512 * 18 17 14 35 35 H 1.07998 * 119.98560 * 359.97438 * 20 19 18 36 36 H 1.08002 * 120.01531 * 179.69754 * 21 20 19 37 37 H 1.07998 * 120.01314 * 180.02562 * 24 22 21 38 38 H 1.07994 * 119.98607 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6526 0.7000 6 1 3.5456 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 1.4688 -2.1387 0.0005 9 7 3.3798 -1.2033 0.0011 10 6 4.0536 -2.3705 0.0011 11 8 3.4473 -3.4210 0.0011 12 6 5.5607 -2.3705 0.0022 13 7 6.0490 -3.7518 0.0026 14 16 7.6313 -4.0706 -0.3673 15 8 7.8499 -3.3848 -1.5925 16 8 7.7303 -5.4862 -0.2924 17 6 8.5750 -3.2947 0.9736 18 6 10.0702 -3.5230 0.7434 19 6 10.8542 -2.8778 1.8570 20 6 11.2659 -1.5632 1.7403 21 6 11.9899 -0.9724 2.7585 22 6 12.2924 -1.6938 3.9009 23 9 12.9949 -1.1153 4.8996 24 6 11.8742 -3.0084 4.0193 25 6 11.1549 -3.5988 2.9976 26 1 -0.4851 0.8400 -0.0004 27 1 3.8648 -0.3633 0.0014 28 1 5.9233 -1.8570 0.8927 29 1 5.9247 -1.8564 -0.8873 30 1 5.4455 -4.4795 0.2197 31 1 8.2828 -3.7364 1.9263 32 1 8.3688 -2.2245 0.9909 33 1 10.3627 -3.0815 -0.2094 34 1 10.2760 -4.5932 0.7263 35 1 11.0259 -0.9993 0.8511 36 1 12.3156 0.0531 2.6651 37 1 12.1092 -3.5719 4.9102 38 1 10.8283 -4.6240 3.0899 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594777356.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:43 Heat of formation + Delta-G solvation = -129.951822 kcal Electronic energy + Delta-G solvation = -24755.082660 eV Core-core repulsion = 20639.193212 eV Total energy + Delta-G solvation = -4115.889448 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.088 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.27820 -39.69693 -38.67770 -37.16607 -36.03241 -34.80082 -34.64230 -33.83906 -31.81898 -31.60527 -29.74797 -27.42776 -24.78038 -24.20161 -23.53417 -21.69431 -19.73792 -19.37028 -18.74555 -18.13632 -17.78558 -16.95090 -16.80021 -16.25760 -15.97470 -15.84478 -15.55796 -15.26278 -14.92928 -14.64104 -14.48448 -14.34994 -13.97936 -13.62387 -13.50691 -13.25722 -12.72967 -12.58259 -12.45596 -12.45132 -12.28034 -12.17492 -12.06282 -11.89603 -11.82127 -11.39220 -11.28640 -10.90319 -10.68952 -10.08854 -9.73317 -9.58094 -9.51558 -9.00332 -8.78114 -8.33199 -6.42721 -3.95555 0.09981 0.66301 0.76205 2.63208 2.93786 2.99852 3.07176 3.08921 3.51286 3.66219 3.82963 3.99505 4.00448 4.19443 4.21562 4.34007 4.40775 4.45515 4.54771 4.78708 4.85023 4.97909 5.09324 5.14051 5.20748 5.39247 5.44253 5.52159 5.55967 5.61255 5.66813 5.75754 5.93771 6.02400 6.41947 7.12929 7.42632 7.99179 8.43068 8.80231 9.27152 9.61519 10.69618 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.012221 B = 0.002756 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2290.641360 B =10158.406593 C =11781.217080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.044 3.956 3 Si 0.880 3.120 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.268 1.268 7 C -0.310 4.310 8 H 0.122 0.878 9 N -0.579 5.579 10 C 0.443 3.557 11 O -0.570 6.570 12 C 0.100 3.900 13 N -1.100 6.100 14 S 2.617 3.383 15 O -0.954 6.954 16 O -0.956 6.956 17 C -0.633 4.633 18 C -0.071 4.071 19 C -0.086 4.086 20 C -0.086 4.086 21 C -0.151 4.151 22 C 0.094 3.906 23 F -0.141 7.141 24 C -0.151 4.151 25 C -0.086 4.086 26 H 0.276 0.724 27 H 0.373 0.627 28 H 0.080 0.920 29 H 0.097 0.903 30 H 0.428 0.572 31 H 0.138 0.862 32 H 0.136 0.864 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.877 -1.402 5.971 26.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.160 4.160 3 Si 0.706 3.294 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.194 1.194 7 C -0.439 4.439 8 H 0.139 0.861 9 N -0.218 5.218 10 C 0.228 3.772 11 O -0.453 6.453 12 C -0.031 4.031 13 N -0.863 5.863 14 S 2.708 3.292 15 O -0.944 6.944 16 O -0.946 6.946 17 C -0.761 4.761 18 C -0.110 4.110 19 C -0.087 4.087 20 C -0.104 4.104 21 C -0.169 4.169 22 C 0.075 3.925 23 F -0.119 7.119 24 C -0.170 4.170 25 C -0.104 4.104 26 H 0.086 0.914 27 H 0.206 0.794 28 H 0.098 0.902 29 H 0.115 0.885 30 H 0.267 0.733 31 H 0.156 0.844 32 H 0.154 0.846 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.155 0.845 36 H 0.155 0.845 37 H 0.154 0.846 38 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 25.664 -2.290 5.214 26.289 hybrid contribution 0.376 1.750 1.079 2.090 sum 26.040 -0.541 6.293 26.795 Atomic orbital electron populations 1.69615 1.05723 1.27797 1.48208 1.25071 0.95530 0.98148 0.97227 0.86666 0.79773 0.83828 0.79113 1.19362 1.20028 1.19364 1.19447 0.78976 0.96814 1.48643 0.86083 1.42146 1.07733 1.06052 1.65838 1.19491 0.87821 0.84867 0.85052 1.90558 1.68838 1.30957 1.54954 1.21003 0.96462 0.82875 1.02734 1.55187 1.28095 1.14615 1.88441 1.04795 0.73714 0.74562 0.76133 1.93608 1.84915 1.76245 1.39609 1.93609 1.85509 1.28086 1.87395 1.30767 1.08068 1.15458 1.21803 1.20298 0.90012 1.02474 0.98223 1.19701 0.98892 0.94376 0.95726 1.20996 0.96411 0.94244 0.98729 1.21178 1.01406 1.01115 0.93240 1.17779 0.95982 0.92287 0.86448 1.91511 1.76394 1.84570 1.59453 1.21174 1.00985 0.93807 1.01006 1.20989 0.96845 1.00402 0.92167 0.91379 0.79360 0.90191 0.88522 0.73270 0.84391 0.84589 0.88914 0.88949 0.84540 0.84522 0.84550 0.84590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.67 13.96 55.50 0.77 -23.90 16 2 C 0.04 1.17 5.50 -17.47 -0.10 1.07 16 3 Si 0.88 18.34 27.74 -169.99 -4.71 13.63 16 4 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 5 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 6 H -0.27 -4.96 6.52 56.52 0.37 -4.59 16 7 C -0.31 -8.39 10.16 -14.94 -0.15 -8.54 16 8 H 0.12 3.76 7.39 -52.48 -0.39 3.37 16 9 N -0.58 -12.90 5.09 -10.96 -0.06 -12.96 16 10 C 0.44 9.32 7.85 -10.98 -0.09 9.24 16 11 O -0.57 -14.34 15.30 5.55 0.08 -14.25 16 12 C 0.10 1.44 6.61 -5.19 -0.03 1.41 16 13 N -1.10 -15.08 5.82 -11.65 -0.07 -15.14 16 14 S 2.62 29.89 5.46 -107.50 -0.59 29.30 16 15 O -0.95 -13.69 17.50 -57.54 -1.01 -14.69 16 16 O -0.96 -13.63 18.08 -57.54 -1.04 -14.67 16 17 C -0.63 -4.51 6.05 37.16 0.22 -4.29 16 18 C -0.07 -0.48 5.35 -27.88 -0.15 -0.63 16 19 C -0.09 -0.61 5.13 -104.62 -0.54 -1.14 16 20 C -0.09 -0.59 9.70 -39.59 -0.38 -0.97 16 21 C -0.15 -1.11 10.03 -39.52 -0.40 -1.50 16 22 C 0.09 0.79 7.30 -39.42 -0.29 0.50 16 23 F -0.14 -1.32 17.27 2.25 0.04 -1.29 16 24 C -0.15 -1.10 10.03 -39.51 -0.40 -1.50 16 25 C -0.09 -0.58 9.70 -39.59 -0.38 -0.97 16 26 H 0.28 7.16 8.31 -40.82 -0.34 6.82 16 27 H 0.37 7.10 5.76 -40.82 -0.24 6.87 16 28 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.10 1.24 7.70 -51.93 -0.40 0.84 16 30 H 0.43 6.46 7.67 -34.46 -0.26 6.20 16 31 H 0.14 0.80 8.14 -51.92 -0.42 0.38 16 32 H 0.14 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.09 0.52 8.09 -51.93 -0.42 0.10 16 34 H 0.09 0.52 8.09 -51.93 -0.42 0.10 16 35 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 36 H 0.14 0.79 8.06 -52.49 -0.42 0.36 16 37 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 38 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 LS Contribution 350.00 15.07 5.27 5.27 Total: -1.00 -36.22 350.00 -8.23 -44.45 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -4.25 Total: 11.56 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: -2.68 Total: -7.32 kcal Atomic # 7 Polarization: -52.65 SS G_CDS: 0.65 Total: -52.00 kcal Atomic # 8 Polarization: -41.65 SS G_CDS: -1.96 Total: -43.61 kcal Atomic # 9 Polarization: -1.32 SS G_CDS: 0.04 Total: -1.29 kcal Atomic # 14 Polarization: 18.34 SS G_CDS: -4.71 Total: 13.63 kcal Atomic # 16 Polarization: 29.89 SS G_CDS: -0.59 Total: 29.30 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -36.22 -8.23 -44.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594777356.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.499 kcal (2) G-P(sol) polarization free energy of solvation -36.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds