Wall clock time and date at job start Tue Mar 31 2020 06:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86795 * 120.00162 * 2 1 4 4 H 1.48505 * 109.47035 * 270.00092 * 3 2 1 5 5 H 1.48495 * 109.47329 * 30.00466 * 3 2 1 6 6 H 1.48500 * 109.47080 * 150.00715 * 3 2 1 7 7 C 1.37879 * 119.99607 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99718 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00380 * 359.97438 * 7 2 1 10 10 O 1.42903 * 110.63692 * 298.31227 * 9 7 2 11 11 C 1.55156 * 110.72184 * 61.44868 * 9 7 2 12 12 C 1.54913 * 101.57941 * 153.86456 * 11 9 7 13 13 N 1.47422 * 104.83492 * 322.99607 * 12 11 9 14 14 S 1.65594 * 125.64549 * 204.08852 * 13 12 11 15 15 O 1.42101 * 106.40566 * 336.48491 * 14 13 12 16 16 O 1.42104 * 106.40382 * 203.56108 * 14 13 12 17 17 C 1.76199 * 107.21759 * 90.02525 * 14 13 12 18 18 C 1.38276 * 119.93686 * 114.72345 * 17 14 13 19 19 C 1.38095 * 120.09409 * 179.72281 * 18 17 14 20 20 C 1.38945 * 119.97861 * 0.55458 * 19 18 17 21 21 N 1.39667 * 120.06573 * 179.70480 * 20 19 18 22 22 C 1.38850 * 119.87679 * 359.72067 * 20 19 18 23 23 C 1.38342 * 119.90009 * 0.02562 * 22 20 19 24 24 F 1.35095 * 119.98877 * 179.97438 * 23 22 20 25 25 C 1.47027 * 108.70402 * 24.35265 * 13 12 11 26 26 H 0.97004 * 119.99847 * 359.97438 * 1 2 3 27 27 H 0.96700 * 114.00173 * 61.68470 * 10 9 7 28 28 H 1.09004 * 110.99779 * 35.79490 * 11 9 7 29 29 H 1.08988 * 111.03933 * 271.96160 * 11 9 7 30 30 H 1.08991 * 110.36497 * 204.15133 * 12 11 9 31 31 H 1.09007 * 110.35646 * 81.83670 * 12 11 9 32 32 H 1.07996 * 119.95387 * 359.97438 * 18 17 14 33 33 H 1.08005 * 120.01077 * 180.27381 * 19 18 17 34 34 H 0.97001 * 120.00416 * 180.02562 * 21 20 19 35 35 H 0.97011 * 119.99983 * 0.02562 * 21 20 19 36 36 H 1.08000 * 120.04987 * 180.02562 * 22 20 19 37 37 H 1.09000 * 109.87894 * 118.13025 * 25 13 12 38 38 H 1.09000 * 109.88270 * 239.29628 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.6999 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 8 0.4503 -2.6185 1.1771 11 6 0.3753 -2.6276 -1.2749 12 6 0.2707 -4.1657 -1.4268 13 7 1.5921 -4.6760 -1.0182 14 16 2.2553 -6.1199 -1.4843 15 8 1.1694 -6.9623 -1.8457 16 8 3.2079 -6.4644 -0.4877 17 6 3.1671 -5.8221 -2.9623 18 6 4.5417 -5.9724 -2.9672 19 6 5.2589 -5.7454 -4.1252 20 6 4.6003 -5.3541 -5.2844 21 7 5.3246 -5.1181 -6.4550 22 6 3.2206 -5.1980 -5.2768 23 6 2.5065 -5.4319 -4.1153 24 9 1.1641 -5.2800 -4.1058 25 6 2.2208 -3.6934 -0.1232 26 1 -0.4850 0.8401 0.0004 27 1 -0.2277 -1.9344 1.2628 28 1 0.8725 -2.1828 -2.1370 29 1 -0.6076 -2.1824 -1.1208 30 1 0.0655 -4.4314 -2.4637 31 1 -0.5071 -4.5593 -0.7723 32 1 5.0546 -6.2717 -2.0652 33 1 6.3321 -5.8675 -4.1287 34 1 4.8639 -4.8446 -7.2637 35 1 6.2885 -5.2276 -6.4594 36 1 2.7058 -4.8944 -6.1764 37 1 2.3888 -4.1393 0.8572 38 1 3.1672 -3.3580 -0.5473 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595347199.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:30 Heat of formation + Delta-G solvation = -133.442047 kcal Electronic energy + Delta-G solvation = -27201.112051 eV Core-core repulsion = 23085.071255 eV Total energy + Delta-G solvation = -4116.040796 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.088 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.17891 -39.40587 -37.98998 -36.82755 -35.49787 -34.84881 -34.23168 -32.16646 -30.83981 -29.23836 -29.04438 -28.22834 -24.80355 -23.29256 -22.89629 -21.51583 -19.74802 -18.84575 -18.25270 -17.81233 -17.37501 -17.28087 -16.66094 -15.83509 -15.67379 -15.49719 -15.12929 -14.91078 -14.46907 -14.32412 -14.08388 -13.56118 -13.38525 -13.19755 -12.99948 -12.76269 -12.11192 -11.97264 -11.80190 -11.74257 -11.69879 -11.56245 -11.30131 -11.13883 -11.01706 -10.80796 -10.73130 -10.47458 -10.32931 -10.05542 -9.28465 -9.06588 -8.64238 -8.38844 -8.20607 -8.11942 -6.24741 -4.32280 0.64015 0.90406 1.05692 3.17623 3.20165 3.24908 3.28132 3.31905 3.49818 4.02285 4.14061 4.28008 4.39876 4.68146 4.84504 5.03417 5.18214 5.30249 5.49838 5.52229 5.74825 5.81448 5.90188 5.93943 6.04058 6.13909 6.33305 6.46996 6.51318 6.70270 6.87319 6.93152 7.02275 7.10285 7.23000 7.40724 7.44933 7.77250 8.08195 8.69591 9.35370 9.46237 10.82700 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.013294 B = 0.004749 C = 0.004075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.648253 B = 5894.143344 C = 6869.135793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.072 3.928 3 Si 0.901 3.099 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.534 4.534 8 H 0.064 0.936 9 C 0.250 3.750 10 O -0.584 6.584 11 C -0.130 4.130 12 C 0.115 3.885 13 N -1.003 6.003 14 S 2.712 3.288 15 O -0.958 6.958 16 O -0.960 6.960 17 C -0.767 4.767 18 C 0.052 3.948 19 C -0.228 4.228 20 C 0.287 3.713 21 N -0.864 5.864 22 C -0.254 4.254 23 C 0.248 3.752 24 F -0.118 7.118 25 C 0.136 3.864 26 H 0.267 0.733 27 H 0.381 0.619 28 H 0.064 0.936 29 H 0.086 0.914 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.152 0.848 33 H 0.135 0.865 34 H 0.403 0.597 35 H 0.404 0.596 36 H 0.140 0.860 37 H 0.066 0.934 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.173 -8.470 -12.566 17.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.130 4.130 3 Si 0.729 3.271 4 H -0.207 1.207 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.573 4.573 8 H 0.082 0.918 9 C 0.209 3.791 10 O -0.393 6.393 11 C -0.170 4.170 12 C -0.010 4.010 13 N -0.843 5.843 14 S 2.802 3.198 15 O -0.948 6.948 16 O -0.951 6.951 17 C -0.855 4.855 18 C 0.031 3.969 19 C -0.251 4.251 20 C 0.179 3.821 21 N -0.400 5.400 22 C -0.279 4.279 23 C 0.226 3.774 24 F -0.096 7.096 25 C 0.012 3.988 26 H 0.077 0.923 27 H 0.231 0.769 28 H 0.083 0.917 29 H 0.104 0.896 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.170 0.830 33 H 0.153 0.847 34 H 0.232 0.768 35 H 0.234 0.766 36 H 0.158 0.842 37 H 0.085 0.915 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.309 -9.749 -12.083 17.610 hybrid contribution 0.365 2.063 -1.279 2.455 sum 8.674 -7.686 -13.363 17.688 Atomic orbital electron populations 1.69706 1.05918 1.27523 1.50222 1.24978 0.94998 0.99398 0.93638 0.86453 0.79934 0.82664 0.78098 1.20651 1.21050 1.19720 1.21541 0.93618 0.90323 1.51806 0.91821 1.19461 0.86957 0.90361 0.82325 1.86132 1.51810 1.56450 1.44918 1.23277 1.02565 0.90549 1.00615 1.22257 0.82815 0.97229 0.98659 1.58422 1.27818 1.37939 1.60164 1.01255 0.73000 0.72264 0.73296 1.93566 1.53127 1.63593 1.84505 1.93532 1.63212 1.81979 1.56357 1.30948 1.08159 1.26384 1.20005 1.20576 0.90484 0.87632 0.98170 1.20716 1.00400 1.11666 0.92315 1.17640 0.90253 0.87428 0.86812 1.42635 1.10192 1.76729 1.10464 1.20445 0.93053 1.15350 0.99018 1.16654 0.76690 0.91182 0.92846 1.91579 1.29191 1.91948 1.96852 1.21848 0.96136 0.88800 0.92011 0.92272 0.76860 0.91735 0.89572 0.91742 0.91807 0.83035 0.84713 0.76791 0.76644 0.84180 0.91548 0.91419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.96 10.67 55.43 0.59 -22.37 16 2 C 0.07 1.85 5.28 -17.82 -0.09 1.76 16 3 Si 0.90 20.07 29.54 -169.99 -5.02 15.05 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 7 C -0.53 -13.80 8.22 -34.44 -0.28 -14.08 16 8 H 0.06 1.62 7.58 -52.48 -0.40 1.23 16 9 C 0.25 6.04 0.85 -89.93 -0.08 5.97 16 10 O -0.58 -14.76 13.07 -35.23 -0.46 -15.22 16 11 C -0.13 -2.90 5.47 -24.58 -0.13 -3.03 16 12 C 0.11 2.30 6.97 -2.53 -0.02 2.28 16 13 N -1.00 -20.08 3.70 -111.41 -0.41 -20.49 16 14 S 2.71 50.23 5.58 -107.50 -0.60 49.63 16 15 O -0.96 -19.49 17.01 -57.17 -0.97 -20.47 16 16 O -0.96 -18.83 16.54 -57.17 -0.95 -19.78 16 17 C -0.77 -12.10 5.92 -39.47 -0.23 -12.33 16 18 C 0.05 0.68 9.54 -39.62 -0.38 0.30 16 19 C -0.23 -2.41 9.89 -39.37 -0.39 -2.80 16 20 C 0.29 2.93 6.75 -83.80 -0.57 2.37 16 21 N -0.86 -5.26 9.09 32.41 0.29 -4.96 16 22 C -0.25 -3.07 9.87 -39.32 -0.39 -3.46 16 23 C 0.25 3.78 7.21 -39.45 -0.28 3.49 16 24 F -0.12 -1.92 14.17 2.25 0.03 -1.89 16 25 C 0.14 2.97 6.35 -3.06 -0.02 2.95 16 26 H 0.27 6.59 8.31 -40.82 -0.34 6.26 16 27 H 0.38 9.61 7.46 45.56 0.34 9.95 16 28 H 0.06 1.45 8.04 -51.93 -0.42 1.03 16 29 H 0.09 1.99 7.54 -51.94 -0.39 1.60 16 30 H 0.06 1.18 5.94 -51.93 -0.31 0.87 16 31 H 0.06 1.27 8.14 -51.92 -0.42 0.85 16 32 H 0.15 1.79 7.32 -52.49 -0.38 1.41 16 33 H 0.14 1.01 8.06 -52.48 -0.42 0.59 16 34 H 0.40 1.75 8.84 -40.82 -0.36 1.39 16 35 H 0.40 1.58 8.84 -40.82 -0.36 1.22 16 36 H 0.14 1.36 8.06 -52.49 -0.42 0.94 16 37 H 0.07 1.46 8.07 -51.93 -0.42 1.05 16 38 H 0.07 1.39 7.66 -51.93 -0.40 0.99 16 LS Contribution 332.86 15.07 5.02 5.02 Total: -1.00 -31.28 332.86 -8.84 -40.12 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -3.50 Total: 11.95 kcal Atomic # 6 Polarization: -13.73 SS G_CDS: -2.86 Total: -16.59 kcal Atomic # 7 Polarization: -48.29 SS G_CDS: 0.47 Total: -47.82 kcal Atomic # 8 Polarization: -53.09 SS G_CDS: -2.38 Total: -55.47 kcal Atomic # 9 Polarization: -1.92 SS G_CDS: 0.03 Total: -1.89 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Atomic # 16 Polarization: 50.23 SS G_CDS: -0.60 Total: 49.63 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.28 -8.84 -40.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595347199.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.320 kcal (2) G-P(sol) polarization free energy of solvation -31.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds