Wall clock time and date at job start Tue Mar 31 2020 06:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 119.99767 * 2 1 4 4 H 1.48498 * 109.47010 * 267.24264 * 3 2 1 5 5 H 1.48501 * 109.47267 * 27.24406 * 3 2 1 6 6 H 1.48499 * 109.47007 * 147.24392 * 3 2 1 7 7 C 1.37874 * 120.00207 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99949 * 353.63441 * 7 2 1 9 9 C 1.50703 * 120.00000 * 173.63902 * 7 2 1 10 10 O 1.42896 * 110.77685 * 328.08597 * 9 7 2 11 11 C 1.55153 * 110.71688 * 204.84630 * 9 7 2 12 12 C 1.54908 * 101.61574 * 206.15401 * 11 9 7 13 13 N 1.47421 * 104.83202 * 36.98947 * 12 11 9 14 14 S 1.65604 * 125.64816 * 155.90655 * 13 12 11 15 15 O 1.42098 * 106.40227 * 203.51894 * 14 13 12 16 16 O 1.42101 * 106.40063 * 336.43668 * 14 13 12 17 17 C 1.76204 * 107.21835 * 89.97641 * 14 13 12 18 18 C 1.38269 * 119.93327 * 114.72499 * 17 14 13 19 19 C 1.38101 * 120.09532 * 179.72282 * 18 17 14 20 20 C 1.38946 * 119.97211 * 0.55767 * 19 18 17 21 21 N 1.39667 * 120.06039 * 179.70233 * 20 19 18 22 22 C 1.38853 * 119.88022 * 359.71606 * 20 19 18 23 23 C 1.38346 * 119.89730 * 0.02562 * 22 20 19 24 24 F 1.35098 * 119.98431 * 179.97438 * 23 22 20 25 25 C 1.47018 * 108.70520 * 335.87665 * 13 12 11 26 26 H 0.97005 * 120.00410 * 0.02562 * 1 2 3 27 27 H 0.96702 * 114.00450 * 292.95791 * 10 9 7 28 28 H 1.09003 * 111.00290 * 88.06493 * 11 9 7 29 29 H 1.08993 * 111.00688 * 324.24595 * 11 9 7 30 30 H 1.09002 * 110.36922 * 155.83574 * 12 11 9 31 31 H 1.09011 * 110.36905 * 278.04313 * 12 11 9 32 32 H 1.07995 * 119.95460 * 359.97438 * 18 17 14 33 33 H 1.08002 * 120.01140 * 180.27032 * 19 18 17 34 34 H 0.96995 * 120.00201 * 180.02562 * 21 20 19 35 35 H 0.97005 * 119.99632 * 0.02562 * 21 20 19 36 36 H 1.07993 * 120.04959 * 180.02562 * 22 20 19 37 37 H 1.08998 * 109.88850 * 120.47369 * 25 13 12 38 38 H 1.09007 * 109.87853 * 241.64089 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.5549 2.0128 -1.3984 5 1 1.4186 2.6689 0.6409 6 1 3.5162 1.4578 0.7575 7 6 2.0045 -1.1940 -0.0005 8 1 1.4696 -2.1264 0.1027 9 6 3.5046 -1.1979 -0.1451 10 8 3.9383 -0.1057 -0.9580 11 6 3.9960 -2.5477 -0.7315 12 6 5.4400 -2.6219 -0.1758 13 7 5.3529 -2.0481 1.1794 14 16 6.3953 -2.3589 2.4280 15 8 5.6807 -2.0844 3.6252 16 8 6.9904 -3.6190 2.1497 17 6 7.6893 -1.1664 2.3364 18 6 7.8419 -0.2349 3.3467 19 6 8.8584 0.6976 3.2811 20 6 9.7222 0.7074 2.1928 21 7 10.7470 1.6536 2.1215 22 6 9.5645 -0.2250 1.1760 23 6 8.5477 -1.1602 1.2496 24 9 8.3923 -2.0679 0.2611 25 6 4.1876 -1.1535 1.2385 26 1 -0.4851 0.8401 -0.0004 27 1 3.6655 -0.1714 -1.8835 28 1 3.9975 -2.5228 -1.8212 29 1 3.3923 -3.3768 -0.3625 30 1 5.7755 -3.6580 -0.1282 31 1 6.1160 -2.0332 -0.7961 32 1 7.1677 -0.2390 4.1903 33 1 8.9790 1.4219 4.0731 34 1 11.3493 1.6599 1.3612 35 1 10.8565 2.3045 2.8324 36 1 10.2345 -0.2201 0.3291 37 1 3.4938 -1.4986 2.0050 38 1 4.5119 -0.1366 1.4598 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595347200.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:33 Heat of formation + Delta-G solvation = -128.371356 kcal Electronic energy + Delta-G solvation = -27306.663421 eV Core-core repulsion = 23190.842507 eV Total energy + Delta-G solvation = -4115.820914 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.088 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.24289 -39.46964 -38.42948 -36.90168 -35.56944 -34.91267 -34.77468 -32.34277 -30.90345 -29.66356 -29.25759 -28.44212 -24.70823 -23.35333 -22.95700 -21.96028 -19.84977 -18.98308 -18.29437 -17.87431 -17.45313 -17.37397 -17.02796 -15.96427 -15.76615 -15.55666 -15.31823 -14.96827 -14.84077 -14.47954 -14.25670 -13.64618 -13.45109 -13.35232 -13.08057 -12.96086 -12.52711 -12.14815 -11.99871 -11.86993 -11.82901 -11.74465 -11.63703 -11.29157 -11.16940 -10.83682 -10.67947 -10.60253 -10.23409 -10.15709 -9.21734 -9.13560 -8.68637 -8.48794 -8.42612 -8.26859 -6.17599 -4.28812 0.55830 0.83006 0.99110 3.09516 3.18818 3.39755 3.45691 3.53901 3.70054 3.95076 4.06494 4.32293 4.50539 4.60111 4.76252 5.03657 5.12203 5.19203 5.24009 5.34523 5.45979 5.69563 5.73975 5.80306 5.83346 5.85706 6.01629 6.19723 6.39861 6.47192 6.58153 6.72960 6.79089 6.86909 6.87601 7.06452 7.17153 7.51289 8.15749 8.65378 8.85410 9.44117 10.91250 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.014776 B = 0.004922 C = 0.004409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.528302 B = 5687.769151 C = 6348.983427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.074 3.926 3 Si 0.946 3.054 4 H -0.292 1.292 5 H -0.325 1.325 6 H -0.269 1.269 7 C -0.550 4.550 8 H 0.083 0.917 9 C 0.222 3.778 10 O -0.562 6.562 11 C -0.142 4.142 12 C 0.120 3.880 13 N -1.005 6.005 14 S 2.709 3.291 15 O -0.955 6.955 16 O -0.958 6.958 17 C -0.768 4.768 18 C 0.051 3.949 19 C -0.227 4.227 20 C 0.287 3.713 21 N -0.863 5.863 22 C -0.255 4.255 23 C 0.247 3.753 24 F -0.119 7.119 25 C 0.127 3.873 26 H 0.266 0.734 27 H 0.371 0.629 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.153 0.847 33 H 0.136 0.864 34 H 0.403 0.597 35 H 0.405 0.595 36 H 0.140 0.860 37 H 0.088 0.912 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.906 2.471 2.249 21.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.131 4.131 3 Si 0.781 3.219 4 H -0.220 1.220 5 H -0.257 1.257 6 H -0.195 1.195 7 C -0.588 4.588 8 H 0.101 0.899 9 C 0.181 3.819 10 O -0.370 6.370 11 C -0.182 4.182 12 C -0.005 4.005 13 N -0.845 5.845 14 S 2.799 3.201 15 O -0.946 6.946 16 O -0.948 6.948 17 C -0.856 4.856 18 C 0.031 3.969 19 C -0.250 4.250 20 C 0.179 3.821 21 N -0.400 5.400 22 C -0.279 4.279 23 C 0.225 3.775 24 F -0.097 7.097 25 C 0.003 3.997 26 H 0.076 0.924 27 H 0.219 0.781 28 H 0.093 0.907 29 H 0.099 0.901 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.170 0.830 33 H 0.154 0.846 34 H 0.232 0.768 35 H 0.234 0.766 36 H 0.158 0.842 37 H 0.106 0.894 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 21.003 2.038 3.474 21.386 hybrid contribution 0.883 1.544 -1.070 2.076 sum 21.886 3.582 2.404 22.307 Atomic orbital electron populations 1.69965 1.06827 1.27785 1.47573 1.25152 0.94886 1.00480 0.92610 0.85741 0.77991 0.80225 0.77915 1.21999 1.25656 1.19527 1.21248 0.88424 0.95441 1.53670 0.89864 1.20097 0.93414 0.82182 0.86219 1.86123 1.79711 1.47288 1.23885 1.23381 0.93736 1.00928 1.00141 1.22068 0.99144 0.97607 0.81726 1.58528 1.40063 1.59895 1.26027 1.01425 0.72558 0.73566 0.72546 1.93549 1.71413 1.85787 1.43857 1.93560 1.77921 1.38314 1.85005 1.30948 1.24284 1.25496 1.04845 1.20605 0.93498 0.88077 0.94692 1.20736 0.99571 1.04635 1.00102 1.17647 0.86273 0.86387 0.91837 1.42635 1.33654 1.35634 1.28063 1.20438 1.04052 1.00595 1.02855 1.16637 0.92414 0.85300 0.83128 1.91598 1.94575 1.64305 1.59257 1.22513 0.84749 0.92077 1.00396 0.92420 0.78070 0.90692 0.90147 0.90867 0.92068 0.82963 0.84635 0.76793 0.76597 0.84191 0.89403 0.92003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.09 13.96 55.43 0.77 -25.31 16 2 C 0.07 2.04 5.46 -17.82 -0.10 1.94 16 3 Si 0.95 23.21 24.92 -169.99 -4.24 18.98 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.33 -8.20 7.11 56.52 0.40 -7.80 16 6 H -0.27 -6.52 5.42 56.52 0.31 -6.22 16 7 C -0.55 -14.44 8.72 -34.44 -0.30 -14.74 16 8 H 0.08 2.37 7.99 -52.49 -0.42 1.95 16 9 C 0.22 4.86 0.69 -89.91 -0.06 4.80 16 10 O -0.56 -11.83 8.47 -35.23 -0.30 -12.13 16 11 C -0.14 -2.62 6.21 -24.59 -0.15 -2.77 16 12 C 0.12 2.06 6.57 -2.53 -0.02 2.04 16 13 N -1.01 -19.00 3.70 -111.39 -0.41 -19.41 16 14 S 2.71 48.92 5.58 -107.50 -0.60 48.32 16 15 O -0.96 -18.77 16.54 -57.17 -0.95 -19.72 16 16 O -0.96 -18.66 16.75 -57.17 -0.96 -19.62 16 17 C -0.77 -11.92 5.92 -39.48 -0.23 -12.16 16 18 C 0.05 0.68 9.54 -39.62 -0.38 0.30 16 19 C -0.23 -2.41 9.89 -39.37 -0.39 -2.80 16 20 C 0.29 2.86 6.75 -83.80 -0.57 2.30 16 21 N -0.86 -5.01 9.09 32.41 0.29 -4.72 16 22 C -0.26 -2.96 9.87 -39.31 -0.39 -3.34 16 23 C 0.25 3.61 7.21 -39.45 -0.28 3.33 16 24 F -0.12 -1.82 15.17 2.25 0.03 -1.79 16 25 C 0.13 2.72 5.95 -3.04 -0.02 2.70 16 26 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 27 H 0.37 6.70 8.98 45.56 0.41 7.11 16 28 H 0.07 1.21 8.12 -51.93 -0.42 0.79 16 29 H 0.08 1.50 7.99 -51.93 -0.41 1.09 16 30 H 0.07 1.17 7.78 -51.93 -0.40 0.77 16 31 H 0.06 0.98 7.58 -51.92 -0.39 0.59 16 32 H 0.15 1.85 7.32 -52.49 -0.38 1.46 16 33 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 34 H 0.40 1.60 8.84 -40.82 -0.36 1.24 16 35 H 0.40 1.51 8.84 -40.82 -0.36 1.15 16 36 H 0.14 1.27 8.06 -52.49 -0.42 0.84 16 37 H 0.09 1.96 7.81 -51.93 -0.41 1.55 16 38 H 0.06 1.34 6.69 -51.92 -0.35 0.99 16 LS Contribution 328.97 15.07 4.96 4.96 Total: -1.00 -34.36 328.97 -7.86 -42.22 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -3.58 Total: 6.61 kcal Atomic # 6 Polarization: -15.50 SS G_CDS: -2.89 Total: -18.39 kcal Atomic # 7 Polarization: -50.10 SS G_CDS: 0.66 Total: -49.45 kcal Atomic # 8 Polarization: -49.26 SS G_CDS: -2.20 Total: -51.46 kcal Atomic # 9 Polarization: -1.82 SS G_CDS: 0.03 Total: -1.79 kcal Atomic # 14 Polarization: 23.21 SS G_CDS: -4.24 Total: 18.98 kcal Atomic # 16 Polarization: 48.92 SS G_CDS: -0.60 Total: 48.32 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -34.36 -7.86 -42.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595347200.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.151 kcal (2) G-P(sol) polarization free energy of solvation -34.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds