Wall clock time and date at job start Tue Mar 31 2020 05:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50700 * 119.99906 * 2 1 4 4 N 1.46503 * 109.46928 * 124.99770 * 3 2 1 5 5 C 1.46501 * 119.99702 * 262.17962 * 4 3 2 6 6 C 1.50701 * 109.47309 * 270.00116 * 5 4 3 7 7 H 1.07994 * 119.99925 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99984 * 180.02562 * 6 5 4 9 9 N 1.31515 * 119.99956 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99897 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47162 * 60.00301 * 10 8 6 12 12 H 1.48503 * 109.46919 * 179.97438 * 10 8 6 13 13 H 1.48493 * 109.47072 * 299.99781 * 10 8 6 14 14 C 1.34770 * 119.99856 * 82.18764 * 4 3 2 15 15 O 1.21705 * 120.00051 * 182.26611 * 14 4 3 16 16 C 1.46584 * 120.00071 * 2.25894 * 14 4 3 17 17 S 1.75828 * 125.45859 * 351.76497 * 16 14 4 18 18 C 1.70616 * 91.56383 * 180.02562 * 17 16 14 19 19 C 1.33815 * 110.95540 * 359.73120 * 18 17 16 20 20 C 1.36649 * 125.45808 * 171.80741 * 16 14 4 21 21 S 1.76197 * 123.34980 * 359.96445 * 20 16 14 22 22 N 1.65598 * 107.22009 * 294.99960 * 21 20 16 23 23 O 1.42103 * 106.40101 * 181.45945 * 21 20 16 24 24 O 1.42098 * 106.40559 * 48.54237 * 21 20 16 25 25 H 1.08007 * 119.99909 * 179.97438 * 1 2 3 26 26 H 1.07996 * 120.00248 * 0.02562 * 1 2 3 27 27 H 1.07995 * 120.00063 * 180.02562 * 2 1 3 28 28 H 1.09002 * 109.46987 * 4.99623 * 3 2 1 29 29 H 1.08996 * 109.47071 * 244.99862 * 3 2 1 30 30 H 1.09000 * 109.47095 * 30.00524 * 5 4 3 31 31 H 1.09004 * 109.46658 * 150.00580 * 5 4 3 32 32 H 0.96995 * 119.99958 * 180.02562 * 9 8 6 33 33 H 1.07996 * 124.52433 * 180.02562 * 18 17 16 34 34 H 1.07997 * 122.45364 * 180.27518 * 19 18 17 35 35 H 0.97007 * 119.99935 * 150.00258 * 22 21 20 36 36 H 0.97002 * 120.00127 * 329.72447 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 2.6199 2.0176 2.3710 6 6 3.0593 3.4574 2.3008 7 1 3.5659 3.8250 1.4208 8 6 2.8144 4.3053 3.3601 9 7 2.1979 3.8574 4.4320 10 14 3.3585 6.0902 3.2728 11 1 2.6958 6.7539 2.1215 12 1 2.9796 6.7851 4.5293 13 1 4.8319 6.1505 3.0982 14 6 4.1934 0.7259 1.0320 15 8 4.9494 0.7126 1.9857 16 6 4.5877 0.0827 -0.2248 17 16 3.5416 -0.1641 -1.6163 18 6 4.7995 -0.9195 -2.4868 19 6 5.9229 -0.9659 -1.7612 20 6 5.8269 -0.4219 -0.5023 21 16 7.1701 -0.3730 0.6369 22 7 7.5536 1.2204 0.8746 23 8 8.2814 -0.9583 -0.0277 24 8 6.6640 -0.8528 1.8749 25 1 -0.5400 -0.9354 -0.0004 26 1 -0.5400 0.9352 -0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3585 2.1316 0.0895 29 1 2.6213 1.4026 -0.9313 30 1 1.5382 1.9736 2.4985 31 1 3.1056 1.5303 3.2164 32 1 2.0253 4.4540 5.1770 33 1 4.7035 -1.3044 -3.4913 34 1 6.8371 -1.4021 -2.1357 35 1 7.9226 1.5090 1.7240 36 1 7.4130 1.8645 0.1630 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597684736.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:12 Heat of formation + Delta-G solvation = -35.170260 kcal Electronic energy + Delta-G solvation = -24597.922058 eV Core-core repulsion = 20916.522729 eV Total energy + Delta-G solvation = -3681.399330 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 330.054 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.57247 -37.67110 -36.74760 -35.83038 -35.39410 -33.44062 -32.79427 -32.26538 -30.23611 -27.77641 -26.15959 -25.13322 -23.03301 -20.87328 -20.36404 -19.82358 -18.75941 -17.80021 -17.23829 -16.95268 -16.61617 -16.01306 -15.72297 -15.19937 -15.11980 -14.91154 -14.58484 -14.15956 -13.98022 -13.43502 -13.04172 -12.84579 -12.58847 -12.42244 -12.17062 -11.85223 -11.64828 -11.47330 -11.43761 -11.24654 -11.13816 -11.04017 -10.70880 -10.48577 -10.26446 -10.06685 -9.81904 -9.58982 -9.34805 -9.14964 -8.61150 -8.52152 -7.93430 -6.13965 -4.20175 0.19754 0.70301 1.43842 1.82489 2.02841 2.25033 3.24799 3.30526 3.30949 3.43580 3.53818 3.60981 3.97322 4.35039 4.54786 4.76735 4.96159 5.09922 5.14580 5.21149 5.23113 5.34877 5.72466 5.77995 5.88486 5.90748 6.07632 6.34048 6.56936 6.66325 6.84653 7.25730 7.33686 7.38908 7.80088 8.04314 8.09259 8.61271 8.84368 9.44978 10.94100 Molecular weight = 330.05amu Principal moments of inertia in cm(-1) A = 0.011701 B = 0.005665 C = 0.004285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2392.401349 B = 4941.520152 C = 6532.569124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.188 4.188 3 C 0.122 3.878 4 N -0.577 5.577 5 C 0.247 3.753 6 C -0.534 4.534 7 H 0.059 0.941 8 C 0.065 3.935 9 N -0.890 5.890 10 Si 0.899 3.101 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.547 3.453 15 O -0.479 6.479 16 C -0.136 4.136 17 S 0.293 5.707 18 C -0.299 4.299 19 C -0.075 4.075 20 C -0.637 4.637 21 S 2.719 3.281 22 N -1.235 6.235 23 O -0.979 6.979 24 O -0.927 6.927 25 H 0.100 0.900 26 H 0.103 0.897 27 H 0.112 0.888 28 H 0.110 0.890 29 H 0.074 0.926 30 H 0.038 0.962 31 H 0.053 0.947 32 H 0.266 0.734 33 H 0.167 0.833 34 H 0.152 0.848 35 H 0.422 0.578 36 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.947 -6.775 -14.961 16.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.208 4.208 3 C -0.003 4.003 4 N -0.308 5.308 5 C 0.129 3.871 6 C -0.572 4.572 7 H 0.077 0.923 8 C -0.138 4.138 9 N -0.528 5.528 10 Si 0.727 3.273 11 H -0.203 1.203 12 H -0.211 1.211 13 H -0.201 1.201 14 C 0.330 3.670 15 O -0.355 6.355 16 C -0.261 4.261 17 S 0.562 5.438 18 C -0.436 4.436 19 C -0.104 4.104 20 C -0.739 4.739 21 S 2.802 3.198 22 N -0.909 5.909 23 O -0.968 6.968 24 O -0.917 6.917 25 H 0.118 0.882 26 H 0.121 0.879 27 H 0.130 0.870 28 H 0.128 0.872 29 H 0.091 0.909 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.185 0.815 34 H 0.170 0.830 35 H 0.253 0.747 36 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 0.134 -7.333 -14.269 16.043 hybrid contribution 1.209 1.231 -0.462 1.786 sum 1.343 -6.102 -14.730 16.001 Atomic orbital electron populations 1.23868 0.95393 1.02245 0.98488 1.23436 0.96865 0.98647 1.01887 1.20965 0.93511 0.96940 0.88919 1.48165 1.13801 1.52076 1.16769 1.19465 0.96402 0.91526 0.79682 1.21336 1.38980 0.94270 1.02647 0.92326 1.24918 0.94944 0.98976 0.95000 1.69916 1.40978 1.36112 1.05840 0.86547 0.79256 0.84199 0.77333 1.20269 1.21119 1.20108 1.17146 0.83771 0.80418 0.85650 1.91021 1.50440 1.57563 1.36438 1.25251 0.97144 1.03567 1.00128 1.83997 1.10387 1.47124 1.02272 1.26113 1.01208 1.09530 1.06767 1.19516 1.00022 0.99815 0.91017 1.30483 1.15475 1.14087 1.13822 1.01196 0.72775 0.72654 0.73176 1.52834 1.83239 1.28842 1.25968 1.93571 1.50404 1.75677 1.77158 1.93680 1.79343 1.78204 1.40430 0.88198 0.87876 0.87042 0.87214 0.90929 0.94391 0.92941 0.92471 0.81505 0.83042 0.74675 0.76272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.78 14.32 29.01 0.42 -1.37 16 2 C -0.19 -2.43 7.92 -36.03 -0.29 -2.71 16 3 C 0.12 1.84 5.43 -5.19 -0.03 1.81 16 4 N -0.58 -11.58 2.46 -178.01 -0.44 -12.02 16 5 C 0.25 6.10 5.14 -5.19 -0.03 6.07 16 6 C -0.53 -14.13 9.39 -34.44 -0.32 -14.46 16 7 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 8 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 9 N -0.89 -25.36 13.29 55.43 0.74 -24.63 16 10 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 11 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 12 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 13 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 14 C 0.55 11.19 7.55 -12.90 -0.10 11.09 16 15 O -0.48 -11.43 12.15 -18.70 -0.23 -11.66 16 16 C -0.14 -2.24 6.23 -36.79 -0.23 -2.47 16 17 S 0.29 3.42 15.59 -107.50 -1.68 1.75 16 18 C -0.30 -3.28 10.92 29.18 0.32 -2.96 16 19 C -0.08 -0.98 9.70 -41.41 -0.40 -1.38 16 20 C -0.64 -9.92 5.94 -40.43 -0.24 -10.16 16 21 S 2.72 45.15 5.55 -107.50 -0.60 44.55 16 22 N -1.24 -17.34 8.96 60.35 0.54 -16.80 16 23 O -0.98 -16.97 17.41 -57.17 -1.00 -17.97 16 24 O -0.93 -19.41 15.31 -66.92 -1.02 -20.43 16 25 H 0.10 0.93 8.06 -52.48 -0.42 0.50 16 26 H 0.10 1.07 7.84 -52.49 -0.41 0.66 16 27 H 0.11 1.42 6.90 -52.49 -0.36 1.06 16 28 H 0.11 1.62 7.66 -51.93 -0.40 1.22 16 29 H 0.07 0.95 4.49 -22.34 -0.10 0.85 16 30 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 31 H 0.05 1.48 7.39 -51.93 -0.38 1.10 16 32 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 33 H 0.17 1.30 8.06 -52.49 -0.42 0.88 16 34 H 0.15 1.73 7.78 -52.49 -0.41 1.32 16 35 H 0.42 5.56 8.96 -34.47 -0.31 5.25 16 36 H 0.41 4.77 8.96 -34.47 -0.31 4.46 16 LS Contribution 329.88 15.07 4.97 4.97 Total: -1.00 -35.27 329.88 -8.22 -43.49 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -3.49 Total: 7.85 kcal Atomic # 6 Polarization: -13.87 SS G_CDS: -0.99 Total: -14.87 kcal Atomic # 7 Polarization: -54.29 SS G_CDS: 0.84 Total: -53.45 kcal Atomic # 8 Polarization: -47.81 SS G_CDS: -2.25 Total: -50.06 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 16 Polarization: 48.57 SS G_CDS: -2.27 Total: 46.30 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -35.27 -8.22 -43.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597684736.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.321 kcal (2) G-P(sol) polarization free energy of solvation -35.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds