Wall clock time and date at job start Tue Mar 31 2020 05:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34231 * 116.99635 * 2 1 4 4 O 1.20823 * 119.99860 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00078 * 179.97438 * 3 2 1 6 6 O 1.42897 * 109.47127 * 180.02562 * 5 3 2 7 7 C 1.42902 * 114.00035 * 180.02562 * 6 5 3 8 8 C 1.52996 * 109.47450 * 180.02562 * 7 6 5 9 9 N 1.46505 * 109.47308 * 64.99073 * 8 7 6 10 10 C 1.34773 * 120.00225 * 179.97438 * 9 8 7 11 11 O 1.21587 * 119.99684 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00300 * 180.02562 * 10 9 8 13 13 C 1.46498 * 120.00360 * 180.02562 * 12 10 9 14 14 C 1.53071 * 109.44009 * 84.79625 * 13 12 10 15 15 C 1.53201 * 109.29371 * 181.23934 * 14 13 12 16 16 N 1.46928 * 108.89275 * 305.57634 * 15 14 13 17 17 C 1.36934 * 120.63265 * 233.51651 * 16 15 14 18 18 H 1.07997 * 119.99862 * 151.82898 * 17 16 15 19 19 C 1.38806 * 120.00015 * 331.83027 * 17 16 15 20 20 N 1.31624 * 120.00191 * 343.08772 * 19 17 16 21 21 Si 1.86800 * 120.00146 * 163.08448 * 19 17 16 22 22 H 1.48503 * 109.47142 * 60.00161 * 21 19 17 23 23 H 1.48498 * 109.47084 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47267 * 300.00095 * 21 19 17 25 25 C 1.46932 * 118.73342 * 53.53882 * 16 15 14 26 26 C 1.53045 * 109.46092 * 205.00269 * 13 12 10 27 27 H 1.08995 * 109.47455 * 60.00156 * 1 2 3 28 28 H 1.09001 * 109.46818 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47227 * 299.99476 * 1 2 3 30 30 H 1.09003 * 109.46657 * 60.00572 * 5 3 2 31 31 H 1.08999 * 109.47002 * 300.00257 * 5 3 2 32 32 H 1.08993 * 109.47461 * 59.99604 * 7 6 5 33 33 H 1.09002 * 109.46679 * 299.99699 * 7 6 5 34 34 H 1.09000 * 109.46942 * 304.99807 * 8 7 6 35 35 H 1.08997 * 109.47369 * 184.99200 * 8 7 6 36 36 H 0.97005 * 119.99867 * 0.02562 * 9 8 7 37 37 H 0.97005 * 119.99791 * 0.02562 * 12 10 9 38 38 H 1.08998 * 109.45866 * 324.97703 * 13 12 10 39 39 H 1.09002 * 109.39343 * 61.36176 * 14 13 12 40 40 H 1.09003 * 109.62467 * 301.25403 * 14 13 12 41 41 H 1.09000 * 109.58250 * 185.72113 * 15 14 13 42 42 H 1.08995 * 109.58477 * 65.43833 * 15 14 13 43 43 H 0.96995 * 120.00379 * 180.02562 * 20 19 17 44 44 H 1.08996 * 109.59017 * 66.18099 * 25 16 15 45 45 H 1.09009 * 109.58200 * 186.46074 * 25 16 15 46 46 H 1.09002 * 109.49555 * 58.67538 * 26 13 12 47 47 H 1.08992 * 109.52043 * 298.59539 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2750 0.0006 6 8 3.9713 2.6454 0.0011 7 6 5.3880 2.8327 0.0011 8 6 5.7046 4.3296 0.0022 9 7 5.2345 4.9272 1.2545 10 6 5.4072 6.2448 1.4790 11 8 5.9529 6.9376 0.6419 12 7 4.9752 6.7945 2.6312 13 6 5.1625 8.2269 2.8750 14 6 4.0109 9.0072 2.2363 15 6 4.2263 10.5065 2.4665 16 7 4.3967 10.7471 3.9059 17 6 3.6187 11.6672 4.5564 18 1 3.4026 11.5449 5.6074 19 6 3.1077 12.7569 3.8649 20 7 3.6201 13.0971 2.7013 21 14 1.6927 13.7406 4.5858 22 1 2.1007 14.3067 5.8967 23 1 1.3346 14.8444 3.6592 24 1 0.5177 12.8523 4.7743 25 6 5.4183 9.9820 4.6338 26 6 5.1880 8.4885 4.3827 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 3.9563 0.7808 -0.8892 31 1 3.9557 0.7811 0.8908 32 1 5.8156 2.3713 -0.8890 33 1 5.8156 2.3707 0.8909 34 1 5.2030 4.8077 -0.8391 35 1 6.7813 4.4734 -0.0872 36 1 4.7995 4.3744 1.9225 37 1 4.5403 6.2417 3.2992 38 1 6.1057 8.5499 2.4343 39 1 3.0694 8.7007 2.6920 40 1 3.9805 8.8043 1.1657 41 1 3.3602 11.0599 2.1035 42 1 5.1188 10.8335 1.9331 43 1 3.2633 13.8588 2.2182 44 1 6.4090 10.2640 4.2775 45 1 5.3404 10.1915 5.7007 46 1 5.9950 7.9143 4.8379 47 1 4.2361 8.1884 4.8205 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598985163.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:27 Heat of formation + Delta-G solvation = -133.540415 kcal Electronic energy + Delta-G solvation = -28000.875919 eV Core-core repulsion = 23799.090048 eV Total energy + Delta-G solvation = -4201.785871 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 2.23 seconds Orbital eigenvalues (eV) -40.89058 -39.89317 -38.58248 -37.39023 -36.77711 -34.77059 -34.20738 -32.09966 -30.69528 -29.90758 -29.48344 -28.60161 -27.01514 -24.92141 -23.09371 -22.14489 -21.79461 -21.69830 -20.52933 -19.36548 -18.33692 -17.98952 -17.49661 -17.34387 -16.86625 -16.67218 -16.38585 -15.75085 -15.11876 -14.80167 -14.64376 -14.35680 -14.00000 -13.78403 -13.70295 -13.41337 -13.33904 -12.96473 -12.92770 -12.64148 -12.49703 -12.37940 -12.24559 -11.76414 -11.40627 -11.27904 -11.04366 -10.86231 -10.83561 -10.66466 -10.37937 -10.30448 -10.18740 -10.01774 -9.88785 -9.67812 -9.47789 -9.07722 -8.52442 -8.30401 -6.61467 -5.72059 -3.15204 1.72579 1.82051 2.87750 3.35111 3.42854 3.48757 3.49775 3.51030 4.21373 4.40073 4.45084 4.51384 4.54911 4.59703 4.65635 4.71888 4.75121 4.87381 5.07416 5.36333 5.38912 5.47232 5.53972 5.64183 5.74314 5.85445 5.92848 6.18124 6.32009 6.37340 6.46085 6.52543 6.55535 6.69227 6.73078 6.85954 7.00102 7.04168 7.21386 7.29463 7.48003 7.76878 7.85543 8.25509 8.51855 8.87517 9.27480 9.90959 10.48035 11.36393 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.014769 B = 0.002129 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.445848 B =13146.374767 C =14332.604332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.361 6.361 3 C 0.456 3.544 4 O -0.479 6.479 5 C 0.072 3.928 6 O -0.364 6.364 7 C 0.051 3.949 8 C 0.143 3.857 9 N -0.748 5.748 10 C 0.702 3.298 11 O -0.591 6.591 12 N -0.740 5.740 13 C 0.169 3.831 14 C -0.147 4.147 15 C 0.174 3.826 16 N -0.592 5.592 17 C -0.254 4.254 18 H 0.065 0.935 19 C 0.002 3.998 20 N -0.901 5.901 21 Si 0.903 3.097 22 H -0.283 1.283 23 H -0.291 1.291 24 H -0.284 1.284 25 C 0.149 3.851 26 C -0.138 4.138 27 H 0.065 0.935 28 H 0.104 0.896 29 H 0.065 0.935 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.396 0.604 37 H 0.390 0.610 38 H 0.081 0.919 39 H 0.053 0.947 40 H 0.054 0.946 41 H 0.088 0.912 42 H 0.021 0.979 43 H 0.255 0.745 44 H 0.020 0.980 45 H 0.058 0.942 46 H 0.054 0.946 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.204 -30.952 -4.328 31.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.279 6.279 3 C 0.297 3.703 4 O -0.364 6.364 5 C -0.005 4.005 6 O -0.283 6.283 7 C -0.025 4.025 8 C 0.019 3.981 9 N -0.406 5.406 10 C 0.402 3.598 11 O -0.469 6.469 12 N -0.393 5.393 13 C 0.065 3.935 14 C -0.188 4.188 15 C 0.047 3.953 16 N -0.315 5.315 17 C -0.384 4.384 18 H 0.083 0.917 19 C -0.197 4.197 20 N -0.545 5.545 21 Si 0.733 3.267 22 H -0.209 1.209 23 H -0.217 1.217 24 H -0.211 1.211 25 C 0.022 3.978 26 C -0.178 4.178 27 H 0.084 0.916 28 H 0.122 0.878 29 H 0.084 0.916 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.103 0.897 36 H 0.229 0.771 37 H 0.222 0.778 38 H 0.099 0.901 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.106 0.894 42 H 0.039 0.961 43 H 0.065 0.935 44 H 0.038 0.962 45 H 0.076 0.924 46 H 0.073 0.927 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.311 -29.653 -5.226 30.138 hybrid contribution -1.266 -0.264 0.873 1.560 sum 0.045 -29.916 -4.353 30.231 Atomic orbital electron populations 1.23319 0.75419 1.03921 1.02986 1.86438 1.24044 1.32836 1.84552 1.23259 0.91491 0.81814 0.73729 1.90762 1.66650 1.36155 1.42787 1.21639 0.88478 0.86124 1.04297 1.88058 1.22789 1.21815 1.95607 1.22946 0.80623 0.97164 1.01807 1.21141 0.99924 0.89676 0.87381 1.45009 1.66161 1.08153 1.21243 1.15979 0.79472 0.81475 0.82862 1.90928 1.49169 1.61019 1.45766 1.45503 1.64054 1.11064 1.18664 1.20895 0.99901 0.76895 0.95776 1.22583 0.97237 0.99660 0.99276 1.20755 1.01108 0.89095 0.84302 1.44093 1.38347 1.43849 1.05231 1.19119 1.23860 1.00564 0.94832 0.91749 1.25066 1.00334 0.96507 0.97762 1.70028 1.41077 1.27765 1.15651 0.86370 0.82789 0.79398 0.78190 1.20910 1.21658 1.21084 1.20836 0.92153 0.88390 0.96458 1.22335 1.01075 1.00224 0.94176 0.91628 0.87765 0.91593 0.88711 0.88739 0.90894 0.91933 0.90590 0.89739 0.77076 0.77759 0.90133 0.92852 0.92764 0.89376 0.96129 0.93547 0.96203 0.92394 0.92711 0.91947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.20 10.56 101.05 1.07 1.27 16 2 O -0.36 -2.63 10.57 -39.26 -0.41 -3.04 16 3 C 0.46 4.08 8.03 36.00 0.29 4.37 16 4 O -0.48 -6.42 16.25 -25.47 -0.41 -6.84 16 5 C 0.07 0.41 6.53 36.00 0.24 0.64 16 6 O -0.36 -3.17 9.82 -55.19 -0.54 -3.71 16 7 C 0.05 0.30 6.07 37.16 0.23 0.53 16 8 C 0.14 1.38 6.06 -4.04 -0.02 1.36 16 9 N -0.75 -8.70 5.51 -65.23 -0.36 -9.05 16 10 C 0.70 11.35 8.53 -86.92 -0.74 10.61 16 11 O -0.59 -12.17 16.01 5.29 0.08 -12.08 16 12 N -0.74 -11.25 5.08 -58.62 -0.30 -11.55 16 13 C 0.17 3.13 2.41 -67.87 -0.16 2.96 16 14 C -0.15 -3.14 5.66 -26.59 -0.15 -3.29 16 15 C 0.17 4.41 5.30 -3.71 -0.02 4.39 16 16 N -0.59 -15.24 3.00 -172.31 -0.52 -15.76 16 17 C -0.25 -7.10 9.58 -15.06 -0.14 -7.25 16 18 H 0.06 1.75 7.88 -52.49 -0.41 1.33 16 19 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 20 N -0.90 -26.97 11.20 55.49 0.62 -26.35 16 21 Si 0.90 22.16 29.59 -169.99 -5.03 17.13 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 24 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 25 C 0.15 3.15 6.52 -3.71 -0.02 3.13 16 26 C -0.14 -2.39 5.55 -26.61 -0.15 -2.53 16 27 H 0.06 0.37 8.13 -51.93 -0.42 -0.05 16 28 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.07 0.38 8.13 -51.93 -0.42 -0.04 16 30 H 0.10 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.40 3.66 8.49 -40.82 -0.35 3.32 16 37 H 0.39 4.74 8.62 -40.82 -0.35 4.39 16 38 H 0.08 1.67 7.58 -51.93 -0.39 1.28 16 39 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.09 2.49 6.06 -51.93 -0.31 2.17 16 42 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.06 1.18 7.93 -51.92 -0.41 0.76 16 46 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 LS Contribution 391.02 15.07 5.89 5.89 Total: -1.00 -37.66 391.02 -8.37 -46.03 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -7.71 Total: 3.16 kcal Atomic # 6 Polarization: 15.85 SS G_CDS: 0.31 Total: 16.17 kcal Atomic # 7 Polarization: -62.15 SS G_CDS: -0.55 Total: -62.71 kcal Atomic # 8 Polarization: -24.39 SS G_CDS: -1.29 Total: -25.67 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.03 Total: 17.13 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -37.66 -8.37 -46.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598985163.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.510 kcal (2) G-P(sol) polarization free energy of solvation -37.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.24 seconds