Wall clock time and date at job start Tue Mar 31 2020 06:15:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34648 * 117.00284 * 2 1 4 4 O 1.21408 * 119.99858 * 359.97438 * 3 2 1 5 5 C 1.48239 * 120.00119 * 179.97438 * 3 2 1 6 6 C 1.42298 * 126.94183 * 179.70784 * 5 3 2 7 7 C 1.35313 * 103.91970 * 179.85844 * 6 5 3 8 8 S 1.76196 * 126.65995 * 180.15333 * 7 6 5 9 9 O 1.42099 * 106.40041 * 203.86170 * 8 7 6 10 10 O 1.42099 * 106.40387 * 336.77751 * 8 7 6 11 11 N 1.65599 * 107.22341 * 90.32386 * 8 7 6 12 12 C 1.46508 * 119.99748 * 64.99468 * 11 8 7 13 13 C 1.53002 * 109.46536 * 164.39027 * 12 11 8 14 14 C 1.50702 * 115.55089 * 65.13269 * 13 12 11 15 15 H 1.07998 * 119.99767 * 264.73346 * 14 13 12 16 16 C 1.37874 * 120.00225 * 84.73481 * 14 13 12 17 17 N 1.31516 * 120.00166 * 352.56991 * 16 14 13 18 18 Si 1.86796 * 120.00205 * 172.57495 * 16 14 13 19 19 H 1.48504 * 109.46912 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47274 * 119.99669 * 18 16 14 21 21 H 1.48494 * 109.47365 * 239.99889 * 18 16 14 22 22 C 1.52992 * 117.49869 * 279.45536 * 13 12 11 23 23 C 1.53000 * 117.49480 * 210.79666 * 13 12 11 24 24 O 1.34018 * 106.67243 * 0.39886 * 7 6 5 25 25 N 1.20901 * 111.85859 * 359.72914 * 24 7 6 26 26 H 1.08995 * 109.47132 * 300.00537 * 1 2 3 27 27 H 1.09000 * 109.46476 * 60.01036 * 1 2 3 28 28 H 1.09002 * 109.46966 * 179.97438 * 1 2 3 29 29 H 1.07997 * 128.03936 * 359.97438 * 6 5 3 30 30 H 0.96998 * 120.00358 * 245.00092 * 11 8 7 31 31 H 1.08996 * 109.47023 * 284.38958 * 12 11 8 32 32 H 1.08993 * 109.47206 * 44.39187 * 12 11 8 33 33 H 0.96995 * 120.00481 * 185.02612 * 17 16 14 34 34 H 1.08995 * 117.50269 * 0.02562 * 22 13 12 35 35 H 1.09006 * 117.49906 * 145.02666 * 22 13 12 36 36 H 1.08999 * 117.49513 * 214.98089 * 23 13 12 37 37 H 1.08996 * 117.50052 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0634 1.1997 0.0000 4 8 1.4022 2.2179 -0.0005 5 6 3.5437 1.2772 0.0006 6 6 4.3383 2.4577 -0.0051 7 6 5.6096 1.9944 0.0014 8 16 7.0820 2.9622 0.0027 9 8 8.1040 2.1385 -0.5416 10 8 6.7312 4.2272 -0.5413 11 7 7.4909 3.2306 1.5848 12 6 7.8752 2.1070 2.4428 13 6 8.5657 2.6387 3.7004 14 6 7.7001 3.4635 4.6177 15 1 7.7025 4.5406 4.5386 16 6 6.9051 2.8432 5.5580 17 7 6.7888 1.5332 5.5597 18 14 5.9928 3.8634 6.8294 19 1 6.2891 5.3026 6.6143 20 1 4.5322 3.6326 6.6939 21 1 6.4325 3.4661 8.1909 22 6 10.0419 3.0237 3.5865 23 6 9.6374 1.7567 4.3442 24 8 5.5313 0.6565 0.0012 25 7 4.3848 0.2727 0.0007 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5137 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 4.0043 3.4847 -0.0112 30 1 7.4759 4.1317 1.9435 31 1 6.9851 1.5457 2.7268 32 1 8.5593 1.4538 1.9013 33 1 6.1739 1.1016 6.1732 34 1 10.5213 2.8988 2.6157 35 1 10.3873 3.8736 4.1754 36 1 9.7167 1.7735 5.4312 37 1 9.8503 0.7977 3.8721 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599302428.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:21 Heat of formation + Delta-G solvation = -58.753600 kcal Electronic energy + Delta-G solvation = -26210.906358 eV Core-core repulsion = 22085.731507 eV Total energy + Delta-G solvation = -4125.174851 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.081 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -45.49768 -40.67685 -37.37066 -37.04611 -36.92733 -35.89333 -34.52875 -33.52419 -32.44889 -32.05448 -28.48634 -26.09195 -25.34215 -25.05173 -23.82967 -22.06482 -21.19210 -20.07312 -19.52365 -18.65253 -18.33581 -17.78904 -17.13032 -16.89239 -16.66000 -16.49208 -15.83351 -15.57306 -14.78017 -14.42382 -14.35462 -14.01892 -13.77730 -13.73001 -12.97039 -12.64728 -12.56312 -12.42071 -12.27380 -12.06006 -12.00744 -11.76027 -11.49884 -11.26617 -11.22611 -11.10096 -11.04752 -10.97429 -10.59469 -10.52090 -10.28872 -9.68474 -9.24193 -8.80702 -8.56664 -8.26494 -6.18080 -4.25865 0.18744 0.48009 0.82894 1.93115 2.44449 2.72354 3.10943 3.18650 3.28973 3.31459 3.49801 3.65085 4.25178 4.28035 4.36426 4.60539 4.73664 4.83611 4.83939 5.10056 5.16006 5.22216 5.28238 5.72432 5.78519 6.12302 6.24694 6.30456 6.45992 6.69524 6.88139 7.02352 7.10560 7.28756 7.43156 7.46132 7.50773 7.73627 8.26205 8.76603 9.41761 10.89674 Molecular weight = 330.08amu Principal moments of inertia in cm(-1) A = 0.010522 B = 0.004558 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2660.509824 B = 6141.402275 C = 7773.228512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.341 6.341 3 C 0.557 3.443 4 O -0.482 6.482 5 C -0.035 4.035 6 C -0.057 4.057 7 C -0.581 4.581 8 S 2.714 3.286 9 O -0.931 6.931 10 O -0.942 6.942 11 N -1.077 6.077 12 C 0.152 3.848 13 C 0.034 3.966 14 C -0.499 4.499 15 H 0.063 0.937 16 C 0.074 3.926 17 N -0.875 5.875 18 Si 0.887 3.113 19 H -0.271 1.271 20 H -0.285 1.285 21 H -0.283 1.283 22 C -0.207 4.207 23 C -0.150 4.150 24 O 0.214 5.786 25 N -0.281 5.281 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.108 0.892 29 H 0.203 0.797 30 H 0.427 0.573 31 H 0.072 0.928 32 H 0.058 0.942 33 H 0.262 0.738 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.626 -1.562 -10.385 12.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.257 6.257 3 C 0.398 3.602 4 O -0.367 6.367 5 C -0.190 4.190 6 C -0.079 4.079 7 C -0.719 4.719 8 S 2.790 3.210 9 O -0.921 6.921 10 O -0.931 6.931 11 N -0.843 5.843 12 C 0.027 3.973 13 C 0.032 3.968 14 C -0.537 4.537 15 H 0.081 0.919 16 C -0.130 4.130 17 N -0.511 5.511 18 Si 0.715 3.285 19 H -0.195 1.195 20 H -0.211 1.211 21 H -0.209 1.209 22 C -0.244 4.244 23 C -0.189 4.189 24 O 0.117 5.883 25 N 0.034 4.966 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.126 0.874 29 H 0.220 0.780 30 H 0.265 0.735 31 H 0.090 0.910 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.953 -2.751 -11.071 13.360 hybrid contribution -1.700 1.223 1.378 2.507 sum -8.653 -1.528 -9.693 13.083 Atomic orbital electron populations 1.23433 0.74782 1.04431 1.03075 1.86606 1.24300 1.31178 1.83570 1.19322 0.85508 0.82255 0.73114 1.90892 1.65027 1.35903 1.44844 1.22502 0.93507 0.90439 1.12522 1.22847 0.89024 1.01543 0.94499 1.38508 1.22431 0.93002 1.17966 1.02175 0.72411 0.72816 0.73621 1.93625 1.51601 1.69929 1.76916 1.93643 1.84078 1.38013 1.77388 1.55208 1.80975 1.18310 1.29794 1.21123 0.99730 0.85523 0.90960 1.18883 0.86299 0.98719 0.92908 1.20425 1.25095 0.92486 1.15706 0.91864 1.24982 0.96305 0.94795 0.96904 1.69965 1.35540 1.08156 1.37480 0.86617 0.79327 0.80746 0.81826 1.19545 1.21144 1.20877 1.23039 1.01473 0.99554 1.00376 1.22560 1.05071 0.92377 0.98886 1.84984 1.21446 1.19352 1.62530 1.74130 0.90423 1.23606 1.08459 0.91228 0.91370 0.87358 0.77968 0.73498 0.90988 0.92355 0.92862 0.91142 0.90262 0.89838 0.91411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.56 101.05 1.07 1.37 16 2 O -0.34 -4.34 10.57 -40.35 -0.43 -4.77 16 3 C 0.56 8.00 7.99 34.84 0.28 8.28 16 4 O -0.48 -7.36 16.74 -19.19 -0.32 -7.68 16 5 C -0.03 -0.52 7.24 -82.55 -0.60 -1.12 16 6 C -0.06 -0.79 10.77 -39.06 -0.42 -1.21 16 7 C -0.58 -8.45 7.48 29.69 0.22 -8.22 16 8 S 2.71 39.86 5.90 -107.50 -0.63 39.23 16 9 O -0.93 -15.57 17.48 -57.18 -1.00 -16.57 16 10 O -0.94 -14.60 17.87 -57.17 -1.02 -15.62 16 11 N -1.08 -17.36 5.95 -10.61 -0.06 -17.43 16 12 C 0.15 2.91 6.06 -4.04 -0.02 2.88 16 13 C 0.03 0.74 1.43 -155.66 -0.22 0.51 16 14 C -0.50 -11.99 8.47 -34.44 -0.29 -12.28 16 15 H 0.06 1.50 7.82 -52.49 -0.41 1.09 16 16 C 0.07 1.86 5.38 -17.82 -0.10 1.76 16 17 N -0.88 -22.80 12.97 55.43 0.72 -22.08 16 18 Si 0.89 19.73 29.55 -169.99 -5.02 14.71 16 19 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 20 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 C -0.21 -4.02 9.96 -26.70 -0.27 -4.29 16 23 C -0.15 -3.18 9.48 -26.69 -0.25 -3.43 16 24 O 0.21 3.30 11.18 17.24 0.19 3.49 16 25 N -0.28 -4.45 12.12 33.29 0.40 -4.04 16 26 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.20 2.28 8.06 -52.49 -0.42 1.86 16 30 H 0.43 6.57 8.38 -34.47 -0.29 6.28 16 31 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16 32 H 0.06 1.04 7.69 -51.93 -0.40 0.64 16 33 H 0.26 6.61 8.32 -40.82 -0.34 6.27 16 34 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 36 H 0.08 1.90 8.14 -51.93 -0.42 1.48 16 37 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 LS Contribution 351.86 15.07 5.30 5.30 Total: -1.00 -30.32 351.86 -6.51 -36.83 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -4.04 Total: 4.39 kcal Atomic # 6 Polarization: -15.15 SS G_CDS: -0.60 Total: -15.75 kcal Atomic # 7 Polarization: -44.61 SS G_CDS: 1.06 Total: -43.55 kcal Atomic # 8 Polarization: -38.58 SS G_CDS: -2.58 Total: -41.16 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.71 kcal Atomic # 16 Polarization: 39.86 SS G_CDS: -0.63 Total: 39.23 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.32 -6.51 -36.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599302428.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.924 kcal (2) G-P(sol) polarization free energy of solvation -30.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds