Wall clock time and date at job start Tue Mar 31 2020 05:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34237 * 116.99513 * 2 1 4 4 O 1.20819 * 120.00213 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99421 * 180.02562 * 3 2 1 6 6 O 1.42904 * 109.46909 * 180.02562 * 5 3 2 7 7 C 1.42899 * 113.99668 * 180.02562 * 6 5 3 8 8 C 1.53010 * 109.46548 * 179.97438 * 7 6 5 9 9 N 1.46498 * 109.46883 * 65.00172 * 8 7 6 10 10 C 1.34780 * 119.99730 * 179.97438 * 9 8 7 11 11 O 1.21586 * 120.00072 * 354.91290 * 10 9 8 12 12 N 1.34774 * 120.00058 * 175.19230 * 10 9 8 13 13 C 1.47071 * 120.88598 * 184.43706 * 12 10 9 14 14 C 1.53694 * 108.28352 * 128.75074 * 13 12 10 15 15 N 1.46906 * 109.25391 * 54.08221 * 14 13 12 16 16 C 1.46894 * 111.00106 * 172.60736 * 15 14 13 17 17 C 1.50704 * 109.47344 * 294.30735 * 16 15 14 18 18 H 1.08004 * 119.99584 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00097 * 179.97438 * 17 16 15 20 20 N 1.31517 * 119.99830 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00010 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.46942 * 90.00151 * 21 19 17 23 23 H 1.48501 * 109.46983 * 210.00274 * 21 19 17 24 24 H 1.48497 * 109.47114 * 330.00059 * 21 19 17 25 25 C 1.46895 * 111.26785 * 296.76362 * 15 14 13 26 26 C 1.47087 * 120.87900 * 4.71322 * 12 10 9 27 27 H 1.09002 * 109.46786 * 299.99374 * 1 2 3 28 28 H 1.09000 * 109.47619 * 59.99219 * 1 2 3 29 29 H 1.08994 * 109.46978 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47238 * 60.00695 * 5 3 2 31 31 H 1.09002 * 109.46974 * 299.99947 * 5 3 2 32 32 H 1.08996 * 109.47552 * 59.99722 * 7 6 5 33 33 H 1.09001 * 109.47265 * 299.99199 * 7 6 5 34 34 H 1.08991 * 109.47144 * 304.99358 * 8 7 6 35 35 H 1.09007 * 109.46718 * 184.99546 * 8 7 6 36 36 H 0.96998 * 120.00171 * 359.97438 * 9 8 7 37 37 H 1.09008 * 109.63098 * 248.52805 * 13 12 10 38 38 H 1.09005 * 109.62925 * 9.10050 * 13 12 10 39 39 H 1.08996 * 109.64595 * 294.08424 * 14 13 12 40 40 H 1.09001 * 109.42378 * 173.94728 * 14 13 12 41 41 H 1.09004 * 109.46810 * 54.30037 * 16 15 14 42 42 H 1.08995 * 109.47280 * 174.30069 * 16 15 14 43 43 H 0.97000 * 119.99582 * 179.97438 * 20 19 17 44 44 H 1.09006 * 109.49279 * 303.13650 * 25 15 14 45 45 H 1.09009 * 109.48884 * 183.06454 * 25 15 14 46 46 H 1.08995 * 109.62677 * 350.89612 * 26 12 10 47 47 H 1.08993 * 109.62850 * 111.48213 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2750 -0.0006 6 8 3.9715 2.6454 0.0001 7 6 5.3881 2.8325 -0.0009 8 6 5.7047 4.3295 -0.0007 9 7 5.2356 4.9276 1.2517 10 6 5.4085 6.2454 1.4755 11 8 6.0348 6.9199 0.6810 12 7 4.8921 6.8144 2.5827 13 6 4.9850 8.2662 2.7989 14 6 3.5799 8.7957 3.1269 15 7 3.0265 8.0345 4.2549 16 6 1.7603 8.6203 4.7146 17 6 2.0193 9.9893 5.2889 18 1 3.0243 10.3844 5.3106 19 6 0.9735 10.7373 5.7866 20 7 -0.2502 10.2563 5.7597 21 14 1.2948 12.4340 6.4992 22 1 1.1844 13.4516 5.4234 23 1 0.2953 12.7232 7.5587 24 1 2.6600 12.4757 7.0819 25 6 2.8559 6.6171 3.9087 26 6 4.2259 5.9991 3.6098 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 3.9557 0.7811 -0.8909 31 1 3.9564 0.7806 0.8892 32 1 5.8150 2.3714 -0.8915 33 1 5.8164 2.3702 0.8884 34 1 5.2026 4.8072 -0.8419 35 1 6.7814 4.4732 -0.0910 36 1 4.8006 4.3752 1.9199 37 1 5.6599 8.4702 3.6302 38 1 5.3574 8.7479 1.8947 39 1 2.9326 8.6801 2.2576 40 1 3.6436 9.8500 3.3959 41 1 1.0720 8.7036 3.8735 42 1 1.3216 7.9817 5.4812 43 1 -0.9859 10.7824 6.1102 44 1 2.2185 6.5319 3.0285 45 1 2.3943 6.0915 4.7447 46 1 4.0961 4.9813 3.2420 47 1 4.8290 5.9894 4.5176 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601622563.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:22 Heat of formation + Delta-G solvation = -133.003300 kcal Electronic energy + Delta-G solvation = -28436.319863 eV Core-core repulsion = 24234.557283 eV Total energy + Delta-G solvation = -4201.762580 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.83243 -40.17713 -38.59623 -37.54449 -36.72523 -34.81022 -34.31816 -32.36088 -31.00210 -30.30017 -29.10034 -27.88873 -26.94659 -25.39945 -23.49446 -22.71626 -22.03386 -21.64504 -20.68137 -19.30423 -18.26229 -17.82848 -17.44430 -17.33061 -16.75247 -16.50605 -16.27242 -15.69737 -15.37061 -14.93513 -14.56800 -14.40065 -14.28091 -13.96972 -13.85015 -13.65733 -13.47740 -13.41009 -13.10747 -12.66723 -12.46239 -12.39301 -12.13970 -11.95499 -11.75807 -11.24485 -11.21076 -11.07731 -10.78418 -10.77961 -10.70212 -10.57192 -10.46268 -10.34967 -9.94382 -9.80305 -9.23249 -9.11227 -8.44869 -8.25838 -7.26706 -6.02492 -4.04167 1.78742 1.87030 2.76899 3.33101 3.35182 3.39189 3.40909 3.43468 3.97611 4.26047 4.42460 4.47612 4.53209 4.60357 4.70635 4.72732 4.81196 4.82311 4.89485 5.14721 5.28302 5.32722 5.34697 5.43232 5.48299 5.60659 5.72534 5.89281 5.91908 5.99625 6.10022 6.28256 6.38068 6.47986 6.51265 6.62556 6.74601 7.11823 7.27187 7.34276 7.35563 7.78506 8.05096 8.07368 8.17658 8.52370 8.73780 9.03247 9.60225 11.08400 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.012304 B = 0.002555 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2275.110472 B =10956.635723 C =12893.281979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.361 6.361 3 C 0.456 3.544 4 O -0.477 6.477 5 C 0.072 3.928 6 O -0.364 6.364 7 C 0.050 3.950 8 C 0.143 3.857 9 N -0.747 5.747 10 C 0.709 3.291 11 O -0.599 6.599 12 N -0.625 5.625 13 C 0.134 3.866 14 C 0.050 3.950 15 N -0.535 5.535 16 C 0.194 3.806 17 C -0.508 4.508 18 H 0.064 0.936 19 C 0.055 3.945 20 N -0.898 5.898 21 Si 0.898 3.102 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.272 1.272 25 C 0.040 3.960 26 C 0.120 3.880 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.104 0.896 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.398 0.602 37 H 0.070 0.930 38 H 0.088 0.912 39 H 0.025 0.975 40 H 0.097 0.903 41 H -0.009 1.009 42 H 0.031 0.969 43 H 0.261 0.739 44 H 0.028 0.972 45 H 0.080 0.920 46 H 0.069 0.931 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.209 -24.337 -11.496 28.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.279 6.279 3 C 0.296 3.704 4 O -0.362 6.362 5 C -0.005 4.005 6 O -0.283 6.283 7 C -0.026 4.026 8 C 0.018 3.982 9 N -0.406 5.406 10 C 0.410 3.590 11 O -0.478 6.478 12 N -0.362 5.362 13 C 0.011 3.989 14 C -0.079 4.079 15 N -0.260 5.260 16 C 0.069 3.931 17 C -0.547 4.547 18 H 0.082 0.918 19 C -0.146 4.146 20 N -0.538 5.538 21 Si 0.726 3.274 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.197 1.197 25 C -0.089 4.089 26 C -0.004 4.004 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.122 0.878 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.093 0.907 35 H 0.103 0.897 36 H 0.235 0.765 37 H 0.088 0.912 38 H 0.106 0.894 39 H 0.043 0.957 40 H 0.115 0.885 41 H 0.009 0.991 42 H 0.049 0.951 43 H 0.071 0.929 44 H 0.046 0.954 45 H 0.098 0.902 46 H 0.087 0.913 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 9.427 -23.298 -11.654 27.703 hybrid contribution -1.004 0.315 0.116 1.059 sum 8.422 -22.983 -11.538 27.060 Atomic orbital electron populations 1.23325 0.75373 1.03912 1.03049 1.86434 1.24076 1.32810 1.84567 1.23240 0.91459 0.81853 0.73820 1.90770 1.66626 1.36131 1.42668 1.21642 0.88570 0.86012 1.04297 1.88061 1.22676 1.21934 1.95609 1.22944 0.80752 0.97047 1.01862 1.21158 0.99971 0.89833 0.87197 1.45146 1.65959 1.08166 1.21315 1.15794 0.79724 0.81674 0.81798 1.90879 1.46432 1.62494 1.48010 1.47392 1.59811 1.08886 1.20062 1.21825 0.97883 0.77657 1.01547 1.22458 0.93361 0.99842 0.92254 1.62083 1.31541 0.99787 1.32595 1.19721 0.83826 0.95007 0.94567 1.21150 0.94065 1.00163 1.39300 0.91758 1.24997 0.95013 0.98480 0.96135 1.69965 0.99198 1.37836 1.46799 0.86491 0.78053 0.84081 0.78764 1.20719 1.21293 1.19730 1.22376 0.94625 0.92289 0.99658 1.21751 0.94421 0.93015 0.91215 0.91487 0.91664 0.87774 0.88733 0.88694 0.90852 0.91873 0.90707 0.89667 0.76536 0.91178 0.89392 0.95697 0.88518 0.99119 0.95100 0.92916 0.95393 0.90210 0.91280 0.90699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.23 10.56 101.05 1.07 1.30 16 2 O -0.36 -2.88 10.57 -39.28 -0.41 -3.29 16 3 C 0.46 4.39 8.03 36.01 0.29 4.68 16 4 O -0.48 -6.80 16.25 -25.47 -0.41 -7.21 16 5 C 0.07 0.45 6.53 36.01 0.24 0.68 16 6 O -0.36 -3.34 9.82 -55.18 -0.54 -3.88 16 7 C 0.05 0.31 6.07 37.16 0.23 0.54 16 8 C 0.14 1.38 6.07 -4.04 -0.02 1.36 16 9 N -0.75 -9.19 5.42 -65.22 -0.35 -9.54 16 10 C 0.71 11.60 8.31 -86.92 -0.72 10.87 16 11 O -0.60 -11.69 15.83 5.29 0.08 -11.61 16 12 N -0.62 -10.18 3.00 -177.91 -0.53 -10.71 16 13 C 0.13 2.33 6.61 -3.37 -0.02 2.30 16 14 C 0.05 1.01 5.47 -3.46 -0.02 0.99 16 15 N -0.53 -11.52 4.62 -235.47 -1.09 -12.61 16 16 C 0.19 5.06 4.72 -4.98 -0.02 5.04 16 17 C -0.51 -14.22 8.41 -34.44 -0.29 -14.51 16 18 H 0.06 1.77 7.13 -52.48 -0.37 1.39 16 19 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 20 N -0.90 -26.85 13.29 55.43 0.74 -26.12 16 21 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 25 C 0.04 0.72 5.62 -3.70 -0.02 0.70 16 26 C 0.12 1.72 6.59 -3.60 -0.02 1.69 16 27 H 0.07 0.45 8.13 -51.93 -0.42 0.03 16 28 H 0.06 0.42 8.13 -51.93 -0.42 0.00 16 29 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.40 4.25 5.97 -40.82 -0.24 4.01 16 37 H 0.07 1.17 8.14 -51.92 -0.42 0.75 16 38 H 0.09 1.54 7.09 -51.93 -0.37 1.17 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.10 2.05 6.67 -51.93 -0.35 1.70 16 41 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 42 H 0.03 0.85 7.97 -51.93 -0.41 0.44 16 43 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 44 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 45 H 0.08 1.36 7.99 -51.92 -0.41 0.94 16 46 H 0.07 0.79 5.63 -51.93 -0.29 0.50 16 47 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 388.80 15.07 5.86 5.86 Total: -1.00 -37.24 388.80 -8.62 -45.86 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -7.51 Total: -0.55 kcal Atomic # 6 Polarization: 16.54 SS G_CDS: 0.57 Total: 17.11 kcal Atomic # 7 Polarization: -57.74 SS G_CDS: -1.24 Total: -58.98 kcal Atomic # 8 Polarization: -24.70 SS G_CDS: -1.29 Total: -25.99 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -37.24 -8.62 -45.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601622563.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.144 kcal (2) G-P(sol) polarization free energy of solvation -37.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds