Wall clock time and date at job start Tue Mar 31 2020 05:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37680 * 127.14560 * 2 1 4 4 C 1.47701 * 126.46876 * 359.97080 * 3 2 1 5 5 N 1.32814 * 119.24430 * 359.72185 * 4 3 2 6 6 C 1.32144 * 120.71792 * 179.76069 * 5 4 3 7 7 C 1.38723 * 119.22448 * 0.51025 * 6 5 4 8 8 C 1.38732 * 118.60395 * 359.74757 * 7 6 5 9 9 N 1.32144 * 119.21943 * 0.02562 * 8 7 6 10 10 N 1.31306 * 107.05946 * 180.02562 * 3 2 1 11 11 N 1.28525 * 109.89853 * 359.75065 * 10 3 2 12 12 C 1.31594 * 110.04761 * 0.41401 * 11 10 3 13 13 N 1.38185 * 126.35603 * 179.85425 * 12 11 10 14 14 C 1.46959 * 110.99848 * 359.69226 * 13 12 11 15 15 C 1.53058 * 109.36419 * 183.18805 * 14 13 12 16 16 N 1.46955 * 109.36051 * 301.59955 * 15 14 13 17 17 C 1.46906 * 110.99744 * 183.18754 * 16 15 14 18 18 C 1.50703 * 109.47109 * 169.99905 * 17 16 15 19 19 H 1.08005 * 119.99876 * 0.02562 * 18 17 16 20 20 C 1.37875 * 119.99989 * 180.02562 * 18 17 16 21 21 N 1.31518 * 119.99944 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99979 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47418 * 89.99710 * 22 20 18 24 24 H 1.48498 * 109.47091 * 209.99770 * 22 20 18 25 25 H 1.48498 * 109.46997 * 329.99580 * 22 20 18 26 26 C 1.46959 * 110.88319 * 59.32174 * 16 15 14 27 27 C 1.46959 * 111.00009 * 123.49178 * 13 12 11 28 28 H 1.08997 * 109.46992 * 269.99734 * 1 2 3 29 29 H 1.09002 * 109.47223 * 29.99584 * 1 2 3 30 30 H 1.08999 * 109.47177 * 150.00063 * 1 2 3 31 31 H 1.08003 * 120.38828 * 180.25359 * 6 5 4 32 32 H 1.08001 * 120.70660 * 179.77029 * 7 6 5 33 33 H 1.07997 * 120.39141 * 179.97438 * 8 7 6 34 34 H 1.08995 * 109.48972 * 63.21980 * 14 13 12 35 35 H 1.08993 * 109.50763 * 303.16689 * 14 13 12 36 36 H 1.08994 * 109.48935 * 181.63483 * 15 14 13 37 37 H 1.08999 * 109.48934 * 61.56553 * 15 14 13 38 38 H 1.08992 * 109.47459 * 289.99824 * 17 16 15 39 39 H 1.09004 * 109.47040 * 49.99975 * 17 16 15 40 40 H 0.96997 * 119.99752 * 180.02562 * 21 20 18 41 41 H 1.08995 * 109.48972 * 60.64434 * 26 16 15 42 42 H 1.08998 * 109.48999 * 180.71033 * 26 16 15 43 43 H 1.08999 * 109.48803 * 296.77985 * 27 13 12 44 44 H 1.09000 * 109.48812 * 56.82622 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2964 1.0975 0.0000 4 6 1.8797 2.5145 -0.0006 5 7 0.5849 2.8100 -0.0068 6 6 0.1796 4.0678 -0.0028 7 6 1.1242 5.0838 -0.0027 8 6 2.4684 4.7408 -0.0015 9 7 2.8084 3.4639 -0.0010 10 7 3.5296 0.6465 -0.0006 11 7 3.5254 -0.6387 0.0044 12 6 2.2877 -1.0858 -0.0006 13 7 1.8954 -2.4108 -0.0004 14 6 3.0614 -3.3053 -0.0012 15 6 2.5864 -4.7581 -0.0814 16 7 1.7058 -5.0464 1.0593 17 6 1.2887 -6.4550 1.0595 18 6 0.5972 -6.7739 2.3599 19 1 0.4790 -6.0068 3.1110 20 6 0.1154 -8.0450 2.5909 21 7 0.2590 -8.9789 1.6761 22 14 -0.7424 -8.4401 4.2025 23 1 -2.1982 -8.1818 4.0648 24 1 -0.5232 -9.8689 4.5426 25 1 -0.1876 -7.5838 5.2815 26 6 0.5398 -4.1519 1.0601 27 6 1.0147 -2.6992 1.1402 28 1 -0.3633 0.0000 1.0276 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 -0.8747 4.3021 -0.0038 32 1 0.8196 6.1199 -0.0032 33 1 3.2281 5.5084 -0.0018 34 1 3.6323 -3.1594 0.9157 35 1 3.6917 -3.0808 -0.8616 36 1 3.4484 -5.4246 -0.0528 37 1 2.0387 -4.9109 -1.0113 38 1 0.6031 -6.6310 0.2307 39 1 2.1651 -7.0934 0.9479 40 1 -0.0803 -9.8730 1.8385 41 1 -0.0311 -4.2978 0.1432 42 1 -0.0902 -4.3765 1.9207 43 1 1.5624 -2.5464 2.0701 44 1 0.1529 -2.0324 1.1119 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601856079.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:19 Heat of formation + Delta-G solvation = 167.461847 kcal Electronic energy + Delta-G solvation = -27539.440881 eV Core-core repulsion = 23722.601869 eV Total energy + Delta-G solvation = -3816.839011 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.166 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -43.06277 -41.28558 -38.99392 -35.58001 -35.08749 -34.16150 -33.07905 -32.45718 -30.72818 -29.81997 -28.18632 -27.36058 -25.30862 -25.26017 -24.79850 -23.35772 -21.99432 -21.45954 -21.10056 -19.45242 -18.18648 -17.81573 -17.09266 -16.65825 -16.37353 -16.14898 -15.89023 -15.19971 -14.87952 -14.81798 -14.50556 -14.35635 -14.18842 -14.04903 -13.64748 -13.50179 -13.24094 -13.01812 -12.19553 -11.93751 -11.64569 -11.42324 -11.38959 -11.35406 -11.08133 -10.90608 -10.87927 -10.83359 -10.64320 -10.48209 -10.46778 -10.25679 -9.85533 -9.69279 -9.61729 -9.23372 -8.48775 -8.19606 -7.36229 -6.07380 -4.09377 0.03722 0.59798 1.70167 1.94036 2.65385 3.08110 3.28114 3.35176 3.39025 3.43962 3.60331 3.68389 4.08036 4.37517 4.38054 4.53641 4.56912 4.68299 4.75541 4.85149 4.96012 5.00740 5.21691 5.27681 5.29954 5.36886 5.47638 5.54138 5.59288 5.69713 5.75177 5.78071 5.88790 6.08285 6.21623 6.32172 6.43575 6.45843 6.50429 6.72208 7.09891 7.21215 7.26832 7.50342 7.72505 7.99450 8.09945 8.45652 8.60226 8.97604 9.55168 11.03340 Molecular weight = 329.17amu Principal moments of inertia in cm(-1) A = 0.025191 B = 0.002377 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.219556 B =11777.849239 C =12473.329153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.462 5.462 3 C 0.194 3.806 4 C 0.413 3.587 5 N -0.517 5.517 6 C 0.156 3.844 7 C -0.230 4.230 8 C 0.158 3.842 9 N -0.481 5.481 10 N -0.213 5.213 11 N -0.320 5.320 12 C 0.392 3.608 13 N -0.451 5.451 14 C 0.077 3.923 15 C 0.054 3.946 16 N -0.539 5.539 17 C 0.194 3.806 18 C -0.510 4.510 19 H 0.063 0.937 20 C 0.056 3.944 21 N -0.897 5.897 22 Si 0.898 3.102 23 H -0.281 1.281 24 H -0.286 1.286 25 H -0.273 1.273 26 C 0.069 3.931 27 C 0.053 3.947 28 H 0.080 0.920 29 H 0.109 0.891 30 H 0.093 0.907 31 H 0.175 0.825 32 H 0.153 0.847 33 H 0.177 0.823 34 H 0.064 0.936 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.035 0.965 38 H -0.006 1.006 39 H 0.033 0.967 40 H 0.262 0.738 41 H 0.034 0.966 42 H 0.096 0.904 43 H 0.058 0.942 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.272 27.632 -5.021 28.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.157 5.157 3 C -0.071 4.071 4 C 0.146 3.854 5 N -0.233 5.233 6 C -0.010 4.010 7 C -0.252 4.252 8 C -0.009 4.009 9 N -0.196 5.196 10 N -0.057 5.057 11 N -0.169 5.169 12 C 0.036 3.964 13 N -0.175 5.175 14 C -0.050 4.050 15 C -0.075 4.075 16 N -0.264 5.264 17 C 0.069 3.931 18 C -0.549 4.549 19 H 0.081 0.919 20 C -0.146 4.146 21 N -0.536 5.536 22 Si 0.725 3.275 23 H -0.208 1.208 24 H -0.212 1.212 25 H -0.198 1.198 26 C -0.060 4.060 27 C -0.074 4.074 28 H 0.098 0.902 29 H 0.127 0.873 30 H 0.111 0.889 31 H 0.192 0.808 32 H 0.171 0.829 33 H 0.194 0.806 34 H 0.082 0.918 35 H 0.107 0.893 36 H 0.103 0.897 37 H 0.053 0.947 38 H 0.011 0.989 39 H 0.051 0.949 40 H 0.071 0.929 41 H 0.052 0.948 42 H 0.115 0.885 43 H 0.076 0.924 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.587 26.396 -5.046 26.881 hybrid contribution -2.396 0.599 0.630 2.549 sum -2.984 26.995 -4.416 27.517 Atomic orbital electron populations 1.22367 0.74295 1.05931 1.04268 1.45857 1.09081 1.04751 1.56019 1.20966 0.87008 0.85929 1.13159 1.19124 0.84712 0.89387 0.92196 1.68312 1.17164 1.22728 1.15082 1.23229 1.01178 0.86892 0.89717 1.23047 0.95543 1.02667 1.03989 1.23374 0.95512 0.92628 0.89341 1.68385 1.37711 1.00993 1.12465 1.74423 1.15757 1.02754 1.12806 1.74938 1.15079 1.02538 1.24369 1.22835 0.86507 0.87676 0.99384 1.58787 1.20274 0.96221 1.42207 1.22249 0.88853 0.90755 1.03116 1.22173 0.98299 0.93563 0.93466 1.62329 1.16835 1.07535 1.39709 1.19723 0.95511 0.81112 0.96743 1.21129 1.36281 0.95885 1.01556 0.91915 1.24989 0.96330 0.96265 0.96977 1.69955 1.46587 1.03044 1.34020 0.86504 0.79648 0.77586 0.83719 1.20751 1.21223 1.19791 1.22008 0.93487 0.88525 1.01977 1.22630 0.95400 0.99396 0.89950 0.90171 0.87271 0.88876 0.80752 0.82932 0.80622 0.91773 0.89347 0.89728 0.94714 0.98856 0.94878 0.92856 0.94756 0.88547 0.92410 0.90454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.72 8.90 59.85 0.53 1.25 16 2 N -0.46 -6.37 3.23 -122.15 -0.39 -6.77 16 3 C 0.19 2.91 7.92 -153.69 -1.22 1.70 16 4 C 0.41 5.13 7.58 -156.84 -1.19 3.94 16 5 N -0.52 -4.97 7.84 -11.23 -0.09 -5.06 16 6 C 0.16 0.90 11.30 -17.24 -0.19 0.71 16 7 C -0.23 -1.04 10.17 -39.22 -0.40 -1.44 16 8 C 0.16 1.08 11.30 -17.24 -0.19 0.89 16 9 N -0.48 -5.61 10.34 -11.23 -0.12 -5.72 16 10 N -0.21 -3.73 12.19 32.59 0.40 -3.33 16 11 N -0.32 -5.69 11.28 30.25 0.34 -5.35 16 12 C 0.39 6.22 7.20 -319.28 -2.30 3.92 16 13 N -0.45 -7.01 4.74 -174.45 -0.83 -7.84 16 14 C 0.08 1.23 4.98 -3.76 -0.02 1.21 16 15 C 0.05 0.95 5.61 -3.76 -0.02 0.93 16 16 N -0.54 -11.15 4.70 -235.91 -1.11 -12.26 16 17 C 0.19 4.87 4.72 -4.97 -0.02 4.85 16 18 C -0.51 -13.83 8.47 -34.44 -0.29 -14.12 16 19 H 0.06 1.67 7.13 -52.48 -0.37 1.30 16 20 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 21 N -0.90 -26.10 13.29 55.43 0.74 -25.37 16 22 Si 0.90 21.15 29.54 -169.99 -5.02 16.12 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 26 C 0.07 1.25 5.43 -3.77 -0.02 1.22 16 27 C 0.05 0.79 5.41 -3.77 -0.02 0.77 16 28 H 0.08 0.69 7.78 -51.93 -0.40 0.29 16 29 H 0.11 0.96 6.24 -51.93 -0.32 0.64 16 30 H 0.09 0.86 7.62 -51.93 -0.40 0.47 16 31 H 0.18 0.36 8.06 -52.48 -0.42 -0.06 16 32 H 0.15 0.14 8.06 -52.49 -0.42 -0.28 16 33 H 0.18 0.59 8.06 -52.49 -0.42 0.16 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.09 1.34 8.02 -51.93 -0.42 0.92 16 36 H 0.08 1.45 8.07 -51.93 -0.42 1.03 16 37 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 38 H -0.01 -0.17 8.12 -51.93 -0.42 -0.59 16 39 H 0.03 0.89 8.03 -51.93 -0.42 0.48 16 40 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 41 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.10 1.84 6.79 -51.93 -0.35 1.48 16 43 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.08 0.96 5.29 -51.93 -0.27 0.68 16 LS Contribution 361.03 15.07 5.44 5.44 Total: -1.00 -34.26 361.03 -11.99 -46.25 By element: Atomic # 1 Polarization: 2.48 SS G_CDS: -5.89 Total: -3.42 kcal Atomic # 6 Polarization: 12.74 SS G_CDS: -5.45 Total: 7.29 kcal Atomic # 7 Polarization: -70.63 SS G_CDS: -1.06 Total: -71.69 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.26 -11.99 -46.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601856079.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 213.711 kcal (2) G-P(sol) polarization free energy of solvation -34.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 179.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 167.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds