Wall clock time and date at job start Tue Mar 31 2020 05:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86796 * 120.00142 * 2 1 4 4 H 1.48504 * 109.47192 * 274.86241 * 3 2 1 5 5 H 1.48495 * 109.47335 * 34.85898 * 3 2 1 6 6 H 1.48500 * 109.47206 * 154.86344 * 3 2 1 7 7 C 1.39944 * 120.00035 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00194 * 160.43951 * 7 2 1 9 9 C 1.41397 * 119.99482 * 340.71410 * 7 2 1 10 10 C 1.40440 * 119.97184 * 331.80727 * 9 7 2 11 11 C 1.37604 * 119.54741 * 180.18056 * 10 9 7 12 12 C 1.38383 * 119.98836 * 0.64810 * 11 10 9 13 13 C 1.39245 * 121.04436 * 359.64068 * 12 11 10 14 14 C 1.37096 * 119.98527 * 359.49563 * 13 12 11 15 15 C 1.50558 * 122.97954 * 181.72730 * 14 13 12 16 16 C 1.52779 * 110.88242 * 339.27624 * 15 14 13 17 17 N 1.47232 * 107.88350 * 47.42263 * 16 15 14 18 18 C 1.34780 * 121.33222 * 116.12483 * 17 16 15 19 19 O 1.21275 * 119.99748 * 359.97256 * 18 17 16 20 20 C 1.50689 * 119.99996 * 179.97438 * 18 17 16 21 21 N 1.46904 * 109.47182 * 174.24177 * 20 18 17 22 22 C 1.46957 * 111.00236 * 170.06360 * 21 20 18 23 23 C 1.53049 * 109.36642 * 183.19096 * 22 21 20 24 24 N 1.46954 * 109.35948 * 301.59812 * 23 22 21 25 25 C 1.46953 * 110.88620 * 59.32326 * 24 23 22 26 26 C 1.46954 * 110.99678 * 293.86383 * 21 20 18 27 27 C 1.46665 * 117.34126 * 296.09780 * 17 16 15 28 28 H 0.97002 * 119.99868 * 359.97438 * 1 2 3 29 29 H 1.07996 * 120.23225 * 0.39370 * 10 9 7 30 30 H 1.08001 * 120.00809 * 180.38478 * 11 10 9 31 31 H 1.08000 * 119.48077 * 179.62517 * 12 11 10 32 32 H 1.09004 * 109.19853 * 99.63835 * 15 14 13 33 33 H 1.09006 * 109.19816 * 218.91631 * 15 14 13 34 34 H 1.09002 * 109.78305 * 287.82369 * 16 15 14 35 35 H 1.09006 * 109.82908 * 167.04443 * 16 15 14 36 36 H 1.09000 * 109.47203 * 294.24156 * 20 18 17 37 37 H 1.09004 * 109.47611 * 54.24321 * 20 18 17 38 38 H 1.09004 * 109.48674 * 303.15668 * 22 21 20 39 39 H 1.08995 * 109.49252 * 63.22019 * 22 21 20 40 40 H 1.08994 * 109.48771 * 181.63021 * 23 22 21 41 41 H 1.08997 * 109.49070 * 61.56138 * 23 22 21 42 42 H 1.00907 * 110.99645 * 183.18688 * 24 23 22 43 43 H 1.08993 * 109.49548 * 180.71279 * 25 24 23 44 44 H 1.09003 * 109.50948 * 60.65223 * 25 24 23 45 45 H 1.09005 * 109.48856 * 296.77182 * 26 21 20 46 46 H 1.08994 * 109.49262 * 56.84506 * 26 21 20 47 47 H 1.08998 * 109.42948 * 284.40524 * 27 17 16 48 48 H 1.08996 * 109.43343 * 164.55378 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3870 2.1057 -1.3951 5 1 1.4949 2.6208 0.8002 6 1 3.5874 1.4126 0.5947 7 6 2.0080 -1.2119 -0.0005 8 1 3.0412 -1.2388 -0.3137 9 6 1.3604 -2.4022 0.4034 10 6 0.3010 -2.3470 1.3237 11 6 -0.3206 -3.5111 1.7136 12 6 0.1082 -4.7265 1.2095 13 6 1.1614 -4.7959 0.3012 14 6 1.7840 -3.6475 -0.1150 15 6 2.9030 -3.6409 -1.1222 16 6 3.5655 -5.0148 -1.2092 17 7 2.4996 -6.0248 -1.3170 18 6 2.3707 -6.7931 -2.4168 19 8 3.1415 -6.6594 -3.3436 20 6 1.2689 -7.8181 -2.4950 21 7 1.2561 -8.4221 -3.8340 22 6 0.3580 -9.5844 -3.8789 23 6 0.4335 -10.2310 -5.2641 24 7 0.0609 -9.2414 -6.2846 25 6 0.9590 -8.0791 -6.2398 26 6 0.8835 -7.4325 -4.8545 27 6 1.5840 -6.1618 -0.1795 28 1 -0.4850 0.8401 0.0004 29 1 -0.0260 -1.3971 1.7201 30 1 -1.1401 -3.4767 2.4161 31 1 -0.3815 -5.6356 1.5258 32 1 2.5033 -3.3732 -2.1004 33 1 3.6477 -2.9021 -0.8258 34 1 4.1567 -5.1968 -0.3117 35 1 4.2074 -5.0608 -2.0890 36 1 1.4403 -8.5934 -1.7483 37 1 0.3099 -7.3361 -2.3047 38 1 0.6619 -10.3083 -3.1227 39 1 -0.6646 -9.2617 -3.6836 40 1 -0.2535 -11.0760 -5.3089 41 1 1.4501 -10.5782 -5.4484 42 1 0.0521 -9.6563 -7.2044 43 1 0.6551 -7.3553 -6.9959 44 1 1.9817 -8.4015 -6.4353 45 1 -0.1333 -7.0853 -4.6703 46 1 1.5705 -6.5875 -4.8097 47 1 2.0875 -6.6911 0.6295 48 1 0.7039 -6.7258 -0.4883 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602574476.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:31 Heat of formation + Delta-G solvation = -0.412926 kcal Electronic energy + Delta-G solvation = -28481.345921 eV Core-core repulsion = 24728.474906 eV Total energy + Delta-G solvation = -3752.871015 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.13860 -38.86109 -37.83674 -35.48320 -34.41626 -33.68906 -32.11647 -30.97032 -30.18369 -29.27611 -27.96787 -25.34101 -24.96260 -24.17811 -23.55703 -22.53660 -20.64177 -20.09953 -19.82134 -18.08299 -17.23075 -16.93754 -16.64756 -15.78517 -15.69441 -15.31929 -14.86376 -14.71325 -14.58456 -14.33774 -14.24170 -13.92899 -13.56740 -13.45202 -13.18224 -13.00377 -12.61812 -12.37199 -12.23011 -11.97937 -11.73640 -11.57313 -11.47332 -11.39169 -11.30145 -11.13803 -10.99098 -10.93638 -10.63308 -10.52630 -10.32283 -9.75654 -9.47030 -9.35586 -9.16393 -8.72067 -8.35615 -8.21759 -7.39317 -7.32988 -6.82919 -4.40907 2.70734 2.80953 2.89025 3.04506 3.07576 3.14439 3.16879 3.88496 3.89344 4.03507 4.52766 4.68804 4.74673 5.01120 5.06190 5.19691 5.22715 5.29804 5.37946 5.39741 5.43769 5.46508 5.63136 5.66602 5.74335 5.78115 5.83176 5.89959 5.95632 5.96595 5.99777 6.24740 6.32486 6.42537 6.67697 6.70877 6.75749 6.83660 6.91719 7.00493 7.07512 7.11607 7.15761 7.26292 7.53032 7.68351 7.84052 7.94021 7.98412 8.19659 8.48328 8.54871 8.81459 8.88491 10.13492 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.016812 B = 0.002942 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.048508 B = 9515.793747 C = 9966.666509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.079 3.921 3 Si 0.903 3.097 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.465 4.465 8 H 0.082 0.918 9 C 0.116 3.884 10 C -0.164 4.164 11 C -0.102 4.102 12 C -0.236 4.236 13 C -0.079 4.079 14 C -0.171 4.171 15 C -0.067 4.067 16 C 0.114 3.886 17 N -0.605 5.605 18 C 0.519 3.481 19 O -0.534 6.534 20 C 0.037 3.963 21 N -0.522 5.522 22 C 0.055 3.945 23 C 0.061 3.939 24 N -0.694 5.694 25 C 0.062 3.938 26 C 0.052 3.948 27 C 0.157 3.843 28 H 0.281 0.719 29 H 0.111 0.889 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.059 0.941 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.086 0.914 36 H 0.102 0.898 37 H 0.065 0.935 38 H 0.079 0.921 39 H 0.043 0.957 40 H 0.078 0.922 41 H 0.039 0.961 42 H 0.342 0.658 43 H 0.078 0.922 44 H 0.041 0.959 45 H 0.038 0.962 46 H 0.095 0.905 47 H 0.068 0.932 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.417 -14.074 -5.187 15.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.139 4.139 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.184 1.184 7 C -0.494 4.494 8 H 0.099 0.901 9 C 0.114 3.886 10 C -0.184 4.184 11 C -0.120 4.120 12 C -0.256 4.256 13 C -0.080 4.080 14 C -0.172 4.172 15 C -0.105 4.105 16 C -0.008 4.008 17 N -0.338 5.338 18 C 0.306 3.694 19 O -0.411 6.411 20 C -0.093 4.093 21 N -0.247 5.247 22 C -0.073 4.073 23 C -0.069 4.069 24 N -0.325 5.325 25 C -0.067 4.067 26 C -0.075 4.075 27 C 0.034 3.966 28 H 0.091 0.909 29 H 0.129 0.871 30 H 0.107 0.893 31 H 0.105 0.895 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.104 0.896 36 H 0.120 0.880 37 H 0.083 0.917 38 H 0.097 0.903 39 H 0.061 0.939 40 H 0.096 0.904 41 H 0.058 0.942 42 H 0.159 0.841 43 H 0.096 0.904 44 H 0.060 0.940 45 H 0.056 0.944 46 H 0.114 0.886 47 H 0.086 0.914 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.626 -13.714 -5.423 14.761 hybrid contribution 0.006 0.828 0.008 0.828 sum 0.632 -12.887 -5.415 13.993 Atomic orbital electron populations 1.69835 1.07627 1.29307 1.34874 1.25873 0.94641 1.01210 0.92192 0.86389 0.80889 0.80943 0.79097 1.19575 1.20065 1.18357 1.19574 0.98715 0.91275 1.39873 0.90052 1.17565 0.90830 0.91413 0.88825 1.21129 1.00419 0.96626 1.00201 1.20566 0.98691 0.93295 0.99463 1.20144 1.02559 0.96385 1.06496 1.19082 0.97459 0.92383 0.99089 1.19237 1.02411 0.92812 1.02762 1.20403 0.96873 0.94748 0.98446 1.21686 0.89332 0.87818 1.01958 1.48082 1.31719 1.37090 1.16956 1.20276 0.85749 0.81531 0.81828 1.90635 1.44545 1.69258 1.36665 1.21992 0.97544 0.97365 0.92449 1.61819 1.51568 1.08223 1.03098 1.22187 0.94981 0.92908 0.97209 1.21954 0.99369 0.94057 0.91504 1.60534 1.54046 1.09413 1.08546 1.21962 0.94799 0.92830 0.97125 1.22303 0.99685 0.95116 0.90441 1.20473 0.92119 0.96411 0.87586 0.90865 0.87113 0.89326 0.89458 0.92250 0.90572 0.91602 0.89608 0.87972 0.91686 0.90304 0.93905 0.90374 0.94227 0.84103 0.90352 0.94037 0.94399 0.88643 0.91384 0.90400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.05 11.28 55.55 0.63 -19.42 16 2 C 0.08 1.93 5.06 -17.34 -0.09 1.84 16 3 Si 0.90 18.23 29.60 -169.99 -5.03 13.20 16 4 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 5 H -0.28 -5.48 7.11 56.52 0.40 -5.07 16 6 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 7 C -0.47 -11.72 8.29 -37.74 -0.31 -12.03 16 8 H 0.08 1.96 6.29 -52.49 -0.33 1.63 16 9 C 0.12 2.93 5.54 -106.67 -0.59 2.34 16 10 C -0.16 -4.10 8.67 -38.98 -0.34 -4.43 16 11 C -0.10 -2.26 10.03 -39.76 -0.40 -2.66 16 12 C -0.24 -4.85 9.63 -39.15 -0.38 -5.23 16 13 C -0.08 -1.62 5.82 -104.59 -0.61 -2.23 16 14 C -0.17 -3.86 5.81 -103.91 -0.60 -4.46 16 15 C -0.07 -1.35 5.29 -28.07 -0.15 -1.50 16 16 C 0.11 1.97 6.45 -3.76 -0.02 1.95 16 17 N -0.61 -10.15 2.94 -174.38 -0.51 -10.66 16 18 C 0.52 8.61 7.29 -10.99 -0.08 8.53 16 19 O -0.53 -10.33 14.12 5.56 0.08 -10.25 16 20 C 0.04 0.50 4.04 -4.98 -0.02 0.48 16 21 N -0.52 -6.94 4.41 -235.91 -1.04 -7.98 16 22 C 0.06 0.58 5.61 -3.77 -0.02 0.56 16 23 C 0.06 0.57 6.72 -3.77 -0.03 0.55 16 24 N -0.69 -7.00 6.90 -113.64 -0.78 -7.79 16 25 C 0.06 0.72 6.72 -3.76 -0.03 0.69 16 26 C 0.05 0.73 5.26 -3.76 -0.02 0.71 16 27 C 0.16 2.51 6.08 -5.03 -0.03 2.48 16 28 H 0.28 6.49 8.30 -40.82 -0.34 6.16 16 29 H 0.11 2.87 6.46 -52.49 -0.34 2.53 16 30 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 31 H 0.09 1.55 8.05 -52.49 -0.42 1.12 16 32 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.08 1.51 6.39 -51.93 -0.33 1.18 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.09 1.47 7.07 -51.93 -0.37 1.11 16 36 H 0.10 1.12 8.03 -51.93 -0.42 0.70 16 37 H 0.07 0.85 7.26 -51.93 -0.38 0.48 16 38 H 0.08 0.70 8.07 -51.93 -0.42 0.28 16 39 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.34 2.70 8.90 -39.29 -0.35 2.35 16 43 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.10 1.55 6.05 -51.93 -0.31 1.23 16 47 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 48 H 0.08 1.09 6.04 -51.93 -0.31 0.77 16 LS Contribution 371.13 15.07 5.59 5.59 Total: -1.00 -28.83 371.13 -12.13 -40.96 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: -7.34 Total: 8.78 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: -3.71 Total: -12.43 kcal Atomic # 7 Polarization: -44.14 SS G_CDS: -1.71 Total: -45.85 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.08 Total: -10.25 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -5.03 Total: 13.20 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -28.83 -12.13 -40.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602574476.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.546 kcal (2) G-P(sol) polarization free energy of solvation -28.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds