Wall clock time and date at job start Tue Mar 31 2020 05:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99971 * 2 1 4 4 H 1.48506 * 109.47081 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47290 * 299.99907 * 3 2 1 6 6 H 1.48501 * 109.47247 * 59.99889 * 3 2 1 7 7 C 1.37876 * 120.00311 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00303 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99282 * 0.02562 * 7 2 1 10 10 N 1.46906 * 109.46713 * 184.48035 * 9 7 2 11 11 C 1.46894 * 110.99971 * 292.07289 * 10 9 7 12 12 C 1.53243 * 109.34011 * 187.25402 * 11 10 9 13 13 N 1.47073 * 108.52049 * 306.16809 * 12 11 10 14 14 C 1.34782 * 120.88322 * 231.18595 * 13 12 11 15 15 O 1.21279 * 119.99350 * 5.36337 * 14 13 12 16 16 C 1.50693 * 120.00105 * 185.36384 * 14 13 12 17 17 N 1.46897 * 110.73353 * 42.85350 * 16 14 13 18 18 C 1.54343 * 110.99379 * 166.38215 * 16 14 13 19 19 C 1.51370 * 105.17269 * 91.95188 * 18 16 14 20 20 C 1.38497 * 130.39149 * 197.19341 * 19 18 16 21 21 C 1.38106 * 120.21564 * 180.02562 * 20 19 18 22 22 C 1.38258 * 119.93149 * 359.97438 * 21 20 19 23 23 C 1.38098 * 119.93522 * 0.02562 * 22 21 20 24 24 C 1.38214 * 109.75716 * 17.19102 * 19 18 16 25 25 C 1.51372 * 109.76080 * 0.02562 * 24 19 18 26 26 C 1.47084 * 118.23772 * 51.45699 * 13 12 11 27 27 C 1.46902 * 111.00041 * 56.37035 * 10 9 7 28 28 H 0.97002 * 119.99792 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.47681 * 64.48532 * 9 7 2 30 30 H 1.08997 * 109.47345 * 304.47170 * 9 7 2 31 31 H 1.08996 * 109.49851 * 67.29086 * 11 10 9 32 32 H 1.09000 * 109.49242 * 307.20777 * 11 10 9 33 33 H 1.09005 * 109.62761 * 186.45681 * 12 11 10 34 34 H 1.09003 * 109.79004 * 65.97606 * 12 11 10 35 35 H 1.00897 * 110.99889 * 52.08332 * 17 16 14 36 36 H 1.00901 * 111.00493 * 176.03246 * 17 16 14 37 37 H 1.08996 * 110.30673 * 210.87927 * 18 16 14 38 38 H 1.09003 * 110.30082 * 333.02977 * 18 16 14 39 39 H 1.07999 * 119.89146 * 0.02562 * 20 19 18 40 40 H 1.07998 * 120.03406 * 179.97438 * 21 20 19 41 41 H 1.08006 * 120.02953 * 179.97438 * 22 21 20 42 42 H 1.08001 * 119.88918 * 179.97438 * 23 22 21 43 43 H 1.08998 * 110.30297 * 223.88915 * 25 24 19 44 44 H 1.08997 * 110.38779 * 101.77793 * 25 24 19 45 45 H 1.08996 * 109.62716 * 68.25611 * 26 13 12 46 46 H 1.08998 * 109.62815 * 188.82914 * 26 13 12 47 47 H 1.08997 * 109.49764 * 292.71100 * 27 10 9 48 48 H 1.09006 * 109.49147 * 52.79181 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2019 -3.6135 0.1093 11 6 3.0204 -3.7277 -1.1051 12 6 3.8671 -5.0026 -1.0285 13 7 4.6242 -4.9856 0.2323 14 6 5.9563 -5.1907 0.2422 15 8 6.5613 -5.2959 -0.8036 16 6 6.6937 -5.2895 1.5526 17 7 5.9411 -6.1081 2.5125 18 6 8.1152 -5.8542 1.3460 19 6 8.9999 -4.6407 1.1563 20 6 10.2768 -4.5343 0.6306 21 6 10.8974 -3.3028 0.5563 22 6 10.2424 -2.1718 1.0073 23 6 8.9692 -2.2759 1.5317 24 6 8.3451 -3.5101 1.6071 25 6 6.9758 -3.8864 2.1313 26 6 3.8882 -4.7447 1.4828 27 6 3.0416 -3.4741 1.3066 28 1 -0.4850 0.8401 0.0004 29 1 0.6863 -2.5927 -0.9270 30 1 0.5653 -2.5227 0.8475 31 1 3.6755 -2.8602 -1.1852 32 1 2.3703 -3.7749 -1.9787 33 1 4.5587 -5.0340 -1.8705 34 1 3.2187 -5.8784 -1.0545 35 1 5.6917 -6.9992 2.1104 36 1 6.4605 -6.2306 3.3688 37 1 8.4297 -6.4179 2.2243 38 1 8.1456 -6.4868 0.4589 39 1 10.7889 -5.4173 0.2777 40 1 11.8934 -3.2233 0.1462 41 1 10.7265 -1.2080 0.9503 42 1 8.4583 -1.3921 1.8842 43 1 6.2279 -3.1756 1.7800 44 1 6.9824 -3.9202 3.2207 45 1 3.2393 -5.5943 1.6951 46 1 4.5937 -4.6056 2.3019 47 1 3.6964 -2.6102 1.1931 48 1 2.4069 -3.3374 2.1822 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602605116.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:38 Heat of formation + Delta-G solvation = 11.416676 kcal Electronic energy + Delta-G solvation = -29218.022175 eV Core-core repulsion = 25465.664130 eV Total energy + Delta-G solvation = -3752.358045 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.184 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.08664 -39.28621 -37.52881 -36.26438 -34.41492 -32.51897 -32.10646 -31.52426 -30.50589 -28.25914 -27.56692 -27.44431 -25.44505 -23.65899 -22.86493 -22.06024 -21.45778 -21.10741 -19.97622 -18.44819 -17.26000 -16.50940 -16.31018 -16.24190 -15.64316 -15.29318 -14.85346 -14.80849 -14.65334 -14.33180 -14.25132 -13.76753 -13.52845 -13.42622 -13.20975 -13.06368 -13.01425 -12.72104 -12.50550 -12.03190 -11.85139 -11.79376 -11.60275 -11.35600 -11.13020 -11.00809 -10.92215 -10.85146 -10.63146 -10.55339 -10.24653 -9.87455 -9.68820 -9.61618 -8.90916 -8.87513 -8.60394 -8.46107 -8.30766 -7.21414 -6.05613 -4.14780 1.27074 1.32187 2.68630 3.18998 3.24322 3.32884 3.36587 3.66297 3.90685 4.28872 4.38476 4.43536 4.54470 4.81558 4.92538 4.95186 5.00986 5.06405 5.24991 5.34513 5.43432 5.47076 5.52717 5.58789 5.63322 5.65121 5.69701 5.77675 5.89370 5.98030 6.00811 6.02413 6.10801 6.28823 6.34049 6.42548 6.50550 6.54020 6.63080 6.66931 6.79022 6.85503 6.91846 7.03679 7.23773 7.49603 7.68378 7.87260 8.00344 8.23253 8.26366 8.34844 8.95577 9.52515 10.99399 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.012333 B = 0.003926 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2269.821587 B = 7129.459051 C = 8540.734074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.066 3.934 3 Si 0.887 3.113 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.549 4.549 8 H 0.056 0.944 9 C 0.187 3.813 10 N -0.540 5.540 11 C 0.050 3.950 12 C 0.113 3.887 13 N -0.591 5.591 14 C 0.528 3.472 15 O -0.546 6.546 16 C 0.105 3.895 17 N -0.820 5.820 18 C -0.097 4.097 19 C -0.081 4.081 20 C -0.106 4.106 21 C -0.121 4.121 22 C -0.122 4.122 23 C -0.103 4.103 24 C -0.095 4.095 25 C -0.068 4.068 26 C 0.108 3.892 27 C 0.047 3.953 28 H 0.262 0.738 29 H 0.027 0.973 30 H 0.036 0.964 31 H 0.039 0.961 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.068 0.932 35 H 0.350 0.650 36 H 0.349 0.651 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.118 0.882 40 H 0.122 0.878 41 H 0.123 0.877 42 H 0.121 0.879 43 H 0.087 0.913 44 H 0.096 0.904 45 H 0.066 0.934 46 H 0.112 0.888 47 H 0.040 0.960 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.297 -12.098 6.428 22.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.137 4.137 3 Si 0.715 3.285 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.588 4.588 8 H 0.074 0.926 9 C 0.062 3.938 10 N -0.264 5.264 11 C -0.079 4.079 12 C -0.009 4.009 13 N -0.322 5.322 14 C 0.313 3.687 15 O -0.423 6.423 16 C 0.008 3.992 17 N -0.352 5.352 18 C -0.137 4.137 19 C -0.082 4.082 20 C -0.124 4.124 21 C -0.139 4.139 22 C -0.140 4.140 23 C -0.121 4.121 24 C -0.096 4.096 25 C -0.106 4.106 26 C -0.015 4.015 27 C -0.082 4.082 28 H 0.072 0.928 29 H 0.046 0.954 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.087 0.913 35 H 0.164 0.836 36 H 0.163 0.837 37 H 0.102 0.898 38 H 0.107 0.893 39 H 0.136 0.864 40 H 0.140 0.860 41 H 0.141 0.859 42 H 0.139 0.861 43 H 0.105 0.895 44 H 0.114 0.886 45 H 0.085 0.915 46 H 0.130 0.870 47 H 0.058 0.942 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 16.591 -11.899 5.892 21.250 hybrid contribution 1.572 1.311 -0.240 2.061 sum 18.162 -10.587 5.652 21.770 Atomic orbital electron populations 1.69950 1.05978 1.26733 1.50191 1.24945 0.94741 0.99099 0.94877 0.86621 0.80156 0.84040 0.77718 1.19910 1.20913 1.20877 1.21772 0.93284 0.92107 1.51632 0.92600 1.19768 0.90769 0.85425 0.97885 1.62502 1.16997 1.46029 1.00912 1.22224 0.95668 0.95282 0.94720 1.21840 0.94128 0.98927 0.86051 1.48097 1.06223 1.68652 1.09269 1.19937 0.82119 0.76932 0.89677 1.90681 1.66929 1.51476 1.33234 1.21532 0.91238 0.95358 0.91026 1.59045 1.47097 1.22011 1.07052 1.21712 0.92595 0.96373 1.02993 1.20321 0.94307 0.95238 0.98300 1.20569 0.94213 0.97768 0.99895 1.21009 0.99921 0.92506 1.00443 1.21020 0.94918 0.98577 0.99455 1.20641 0.95085 0.96478 0.99856 1.20467 0.96009 0.93670 0.99429 1.21061 0.93995 0.94431 1.01067 1.22438 0.95417 0.97950 0.85664 1.22405 0.95659 0.95273 0.94878 0.92845 0.95450 0.94599 0.94266 0.90593 0.89839 0.91340 0.83620 0.83674 0.89846 0.89349 0.86433 0.86017 0.85919 0.86067 0.89484 0.88556 0.91520 0.87038 0.94171 0.90514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.90 13.29 55.43 0.74 -25.16 16 2 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 3 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 4 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 7 C -0.55 -14.90 7.76 -34.44 -0.27 -15.17 16 8 H 0.06 1.54 5.88 -52.49 -0.31 1.23 16 9 C 0.19 4.71 5.14 -4.97 -0.03 4.69 16 10 N -0.54 -11.22 4.83 -235.46 -1.14 -12.36 16 11 C 0.05 0.98 5.29 -3.70 -0.02 0.96 16 12 C 0.11 1.87 6.61 -3.60 -0.02 1.85 16 13 N -0.59 -9.22 3.00 -172.18 -0.52 -9.73 16 14 C 0.53 8.17 6.55 -10.99 -0.07 8.10 16 15 O -0.55 -10.25 15.21 5.56 0.08 -10.17 16 16 C 0.10 1.19 0.65 -131.34 -0.09 1.11 16 17 N -0.82 -6.73 6.25 0.96 0.01 -6.72 16 18 C -0.10 -1.05 5.69 -26.85 -0.15 -1.21 16 19 C -0.08 -1.02 6.14 -104.21 -0.64 -1.65 16 20 C -0.11 -1.23 10.04 -39.53 -0.40 -1.63 16 21 C -0.12 -1.30 10.05 -39.62 -0.40 -1.70 16 22 C -0.12 -1.36 10.05 -39.63 -0.40 -1.76 16 23 C -0.10 -1.28 10.04 -39.54 -0.40 -1.67 16 24 C -0.10 -1.24 6.14 -104.20 -0.64 -1.88 16 25 C -0.07 -0.81 5.10 -26.84 -0.14 -0.94 16 26 C 0.11 1.57 5.44 -3.36 -0.02 1.55 16 27 C 0.05 0.88 5.11 -3.46 -0.02 0.86 16 28 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 29 H 0.03 0.74 8.01 -51.93 -0.42 0.32 16 30 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.04 0.86 7.12 -51.93 -0.37 0.49 16 32 H 0.08 1.45 8.02 -51.93 -0.42 1.04 16 33 H 0.08 1.42 7.04 -51.93 -0.37 1.05 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.35 2.67 8.97 -39.29 -0.35 2.32 16 36 H 0.35 2.04 8.79 -39.29 -0.35 1.70 16 37 H 0.08 0.68 7.90 -51.93 -0.41 0.27 16 38 H 0.09 1.08 7.29 -51.93 -0.38 0.70 16 39 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 40 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 41 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 42 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 43 H 0.09 1.22 7.53 -51.93 -0.39 0.83 16 44 H 0.10 0.93 8.05 -51.93 -0.42 0.51 16 45 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.11 1.42 4.37 -51.93 -0.23 1.19 16 47 H 0.04 0.84 6.62 -51.93 -0.34 0.50 16 48 H 0.08 1.43 8.11 -51.93 -0.42 1.00 16 LS Contribution 373.34 15.07 5.63 5.63 Total: -1.00 -31.96 373.34 -11.27 -43.23 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -7.26 Total: 5.65 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: -3.79 Total: -6.75 kcal Atomic # 7 Polarization: -53.07 SS G_CDS: -0.91 Total: -53.98 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.08 Total: -10.17 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.96 -11.27 -43.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602605116.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.645 kcal (2) G-P(sol) polarization free energy of solvation -31.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds