Wall clock time and date at job start Tue Mar 31 2020 05:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42894 * 113.99862 * 2 1 4 4 C 1.52999 * 109.47071 * 179.97438 * 3 2 1 5 5 O 1.42901 * 109.46816 * 65.00289 * 4 3 2 6 6 C 1.42900 * 114.00041 * 180.02562 * 5 4 3 7 7 C 1.52997 * 109.47512 * 179.97438 * 6 5 4 8 8 C 1.52996 * 109.47464 * 179.97438 * 7 6 5 9 9 N 1.46505 * 109.47308 * 179.97438 * 8 7 6 10 10 C 1.34773 * 120.00225 * 179.97438 * 9 8 7 11 11 O 1.21587 * 119.99684 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00300 * 180.02562 * 10 9 8 13 13 C 1.46498 * 120.00360 * 180.02562 * 12 10 9 14 14 C 1.53071 * 109.44009 * 84.79625 * 13 12 10 15 15 C 1.53201 * 109.29371 * 181.23934 * 14 13 12 16 16 N 1.46928 * 108.89275 * 305.57634 * 15 14 13 17 17 C 1.36934 * 120.63265 * 233.51651 * 16 15 14 18 18 H 1.07997 * 119.99862 * 151.82898 * 17 16 15 19 19 C 1.38806 * 120.00015 * 331.83027 * 17 16 15 20 20 N 1.31624 * 120.00191 * 343.08772 * 19 17 16 21 21 Si 1.86800 * 120.00146 * 163.08448 * 19 17 16 22 22 H 1.48503 * 109.47142 * 60.00161 * 21 19 17 23 23 H 1.48498 * 109.47084 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47267 * 300.00095 * 21 19 17 25 25 C 1.46932 * 118.73342 * 53.53882 * 16 15 14 26 26 C 1.53045 * 109.46092 * 205.00269 * 13 12 10 27 27 H 1.08998 * 109.47279 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46958 * 299.99904 * 1 2 3 29 29 H 1.08998 * 109.47435 * 59.99911 * 1 2 3 30 30 H 1.09003 * 109.47492 * 60.00210 * 3 2 1 31 31 H 1.09001 * 109.47342 * 300.00239 * 3 2 1 32 32 H 1.08993 * 109.47261 * 304.99864 * 4 3 2 33 33 H 1.09000 * 109.47548 * 184.99599 * 4 3 2 34 34 H 1.09004 * 109.47526 * 59.99690 * 6 5 4 35 35 H 1.09004 * 109.47394 * 299.99703 * 6 5 4 36 36 H 1.09006 * 109.47101 * 59.99743 * 7 6 5 37 37 H 1.09006 * 109.47420 * 300.00300 * 7 6 5 38 38 H 1.09000 * 109.46942 * 60.00657 * 8 7 6 39 39 H 1.08997 * 109.47369 * 300.00049 * 8 7 6 40 40 H 0.97005 * 119.99867 * 0.02562 * 9 8 7 41 41 H 0.97005 * 119.99791 * 0.02562 * 12 10 9 42 42 H 1.08998 * 109.45866 * 324.97703 * 13 12 10 43 43 H 1.09002 * 109.39343 * 61.36176 * 14 13 12 44 44 H 1.09003 * 109.62467 * 301.25403 * 14 13 12 45 45 H 1.09000 * 109.58250 * 185.72113 * 15 14 13 46 46 H 1.08995 * 109.58477 * 65.43833 * 15 14 13 47 47 H 0.96995 * 120.00379 * 180.02562 * 20 19 17 48 48 H 1.08996 * 109.59017 * 66.18099 * 25 16 15 49 49 H 1.09009 * 109.58200 * 186.46074 * 25 16 15 50 50 H 1.09002 * 109.49555 * 58.67538 * 26 13 12 51 51 H 1.08992 * 109.52043 * 298.59539 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 8 3.9658 0.5793 -1.2202 6 6 5.3821 0.4187 -1.3217 7 6 5.7266 -0.2360 -2.6609 8 6 7.2430 -0.4073 -2.7698 9 7 7.5728 -1.0347 -4.0520 10 6 8.8586 -1.2847 -4.3690 11 8 9.7449 -0.9900 -3.5906 12 7 9.1620 -1.8614 -5.5487 13 6 10.5597 -2.1337 -5.8930 14 6 10.9807 -3.4762 -5.2900 15 6 12.4514 -3.7430 -5.6258 16 7 12.6318 -3.6489 -7.0810 17 6 13.2121 -4.6736 -7.7798 18 1 12.9546 -4.8342 -8.8162 19 6 14.1313 -5.5059 -7.1560 20 7 14.6964 -5.1334 -6.0271 21 14 14.5664 -7.1547 -7.9187 22 1 15.1387 -6.9386 -9.2719 23 1 15.5636 -7.8477 -7.0639 24 1 13.3425 -7.9888 -8.0262 25 6 12.1780 -2.4342 -7.7719 26 6 10.7094 -2.1834 -7.4153 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8508 0.5686 0.8427 33 1 3.9785 2.1765 0.0901 34 1 5.7354 -0.2136 -0.5071 35 1 5.8638 1.3945 -1.2593 36 1 5.3732 0.3960 -3.4758 37 1 5.2449 -1.2118 -2.7229 38 1 7.5967 -1.0391 -1.9551 39 1 7.7243 0.5687 -2.7081 40 1 6.8656 -1.2695 -4.6732 41 1 8.4549 -2.0962 -6.1699 42 1 11.1933 -1.3429 -5.4914 43 1 10.3622 -4.2705 -5.7078 44 1 10.8541 -3.4472 -4.2077 45 1 12.7282 -4.7414 -5.2871 46 1 13.0794 -3.0021 -5.1311 47 1 15.3390 -5.7148 -5.5914 48 1 12.7818 -1.5848 -7.4524 49 1 12.2769 -2.5681 -8.8492 50 1 10.3880 -1.2341 -7.8437 51 1 10.0950 -2.9898 -7.8155 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609340512.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:12 Heat of formation + Delta-G solvation = -108.855672 kcal Electronic energy + Delta-G solvation = -27576.602916 eV Core-core repulsion = 23511.720551 eV Total energy + Delta-G solvation = -4064.882365 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 329.215 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -39.91789 -38.94186 -37.80987 -37.43345 -35.46264 -34.27617 -32.56722 -31.77589 -30.37229 -29.89087 -29.21958 -26.77039 -25.70091 -24.59540 -23.04116 -22.21687 -22.10081 -21.73947 -20.49540 -19.37519 -17.98816 -17.48209 -17.29018 -16.74641 -16.34619 -16.21733 -15.83664 -15.63218 -15.29697 -14.85403 -14.48528 -14.25204 -14.09173 -13.85181 -13.69729 -13.44547 -13.09153 -12.95544 -12.74613 -12.43112 -12.31382 -12.10433 -12.07420 -11.70005 -11.44540 -11.43293 -11.32832 -11.07124 -10.88329 -10.68642 -10.33708 -10.21733 -10.18164 -10.05643 -10.01250 -9.93146 -9.70779 -9.51367 -9.11992 -8.56247 -8.34034 -6.64044 -5.74537 -3.17755 2.71943 3.25879 3.31483 3.41134 3.44334 3.47034 3.47918 4.37254 4.49681 4.52775 4.58432 4.63820 4.72368 4.76211 4.85719 4.88302 4.97141 5.02115 5.13408 5.18900 5.23192 5.25461 5.35359 5.42179 5.45069 5.51116 5.70476 5.79415 5.80856 5.89608 6.14599 6.29176 6.42428 6.45828 6.51322 6.62913 6.65111 6.70435 6.79633 6.82255 6.96112 7.00478 7.16818 7.44289 7.73709 7.83091 8.20544 8.49281 8.82453 9.25050 9.88430 10.45453 11.33943 Molecular weight = 329.21amu Principal moments of inertia in cm(-1) A = 0.028515 B = 0.001514 C = 0.001494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.706829 B =18491.255809 C =18732.113348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.062 3.938 4 C 0.064 3.936 5 O -0.381 6.381 6 C 0.066 3.934 7 C -0.129 4.129 8 C 0.143 3.857 9 N -0.752 5.752 10 C 0.702 3.298 11 O -0.589 6.589 12 N -0.740 5.740 13 C 0.169 3.831 14 C -0.147 4.147 15 C 0.174 3.826 16 N -0.592 5.592 17 C -0.256 4.256 18 H 0.065 0.935 19 C 0.003 3.997 20 N -0.901 5.901 21 Si 0.903 3.097 22 H -0.283 1.283 23 H -0.291 1.291 24 H -0.284 1.284 25 C 0.149 3.851 26 C -0.138 4.138 27 H 0.087 0.913 28 H 0.040 0.960 29 H 0.042 0.958 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.394 0.606 41 H 0.390 0.610 42 H 0.081 0.919 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.088 0.912 46 H 0.021 0.979 47 H 0.255 0.745 48 H 0.020 0.980 49 H 0.058 0.942 50 H 0.055 0.945 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.051 13.898 9.913 31.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C -0.014 4.014 4 C -0.013 4.013 5 O -0.301 6.301 6 C -0.011 4.011 7 C -0.167 4.167 8 C 0.018 3.982 9 N -0.409 5.409 10 C 0.401 3.599 11 O -0.467 6.467 12 N -0.393 5.393 13 C 0.065 3.935 14 C -0.187 4.187 15 C 0.047 3.953 16 N -0.315 5.315 17 C -0.385 4.385 18 H 0.083 0.917 19 C -0.195 4.195 20 N -0.545 5.545 21 Si 0.732 3.268 22 H -0.209 1.209 23 H -0.216 1.216 24 H -0.211 1.211 25 C 0.021 3.979 26 C -0.178 4.178 27 H 0.105 0.895 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.228 0.772 41 H 0.223 0.777 42 H 0.099 0.901 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.106 0.894 46 H 0.039 0.961 47 H 0.065 0.935 48 H 0.038 0.962 49 H 0.076 0.924 50 H 0.073 0.927 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -26.057 13.858 10.595 31.357 hybrid contribution -0.553 -0.744 -0.638 1.125 sum -26.610 13.114 9.957 31.292 Atomic orbital electron populations 1.22758 0.80978 1.02978 0.99879 1.87971 1.19669 1.27266 1.95372 1.22572 0.92404 0.85569 1.00905 1.22514 0.93318 0.97652 0.87835 1.87919 1.22055 1.82138 1.37951 1.22338 0.81501 0.99687 0.97608 1.21658 0.95190 1.02473 0.97390 1.20943 0.93457 0.98310 0.85465 1.45067 1.06650 1.67967 1.21239 1.15986 0.82644 0.78663 0.82576 1.90932 1.46395 1.58811 1.50564 1.45521 1.10027 1.65412 1.18362 1.20908 0.79266 0.98306 0.95043 1.22584 1.01294 0.95551 0.99293 1.20754 0.88684 1.02076 0.83757 1.44091 1.69463 1.14551 1.03400 1.19132 1.17564 1.05695 0.96128 0.91716 1.25058 0.96328 1.00097 0.98061 1.70028 1.29067 1.36124 1.19304 0.86374 0.77727 0.84220 0.78446 1.20888 1.21648 1.21079 1.20839 0.90378 0.90081 0.96567 1.22336 1.01084 1.00422 0.93979 0.89492 0.94159 0.93980 0.91787 0.92361 0.92274 0.91645 0.92730 0.92891 0.90479 0.90288 0.91487 0.91582 0.77226 0.77726 0.90126 0.92849 0.92799 0.89359 0.96134 0.93541 0.96195 0.92365 0.92676 0.91920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.28 16 2 O -0.38 -3.34 10.67 -40.09 -0.43 -3.77 16 3 C 0.06 0.39 6.32 37.16 0.23 0.62 16 4 C 0.06 0.42 6.32 37.16 0.23 0.65 16 5 O -0.38 -3.48 10.31 -40.09 -0.41 -3.89 16 6 C 0.07 0.49 5.94 37.16 0.22 0.71 16 7 C -0.13 -0.98 5.70 -26.73 -0.15 -1.13 16 8 C 0.14 1.41 5.67 -4.04 -0.02 1.39 16 9 N -0.75 -8.33 5.56 -65.23 -0.36 -8.69 16 10 C 0.70 10.98 8.53 -86.92 -0.74 10.23 16 11 O -0.59 -11.95 16.01 5.29 0.08 -11.86 16 12 N -0.74 -10.77 5.08 -58.62 -0.30 -11.07 16 13 C 0.17 3.03 2.41 -67.87 -0.16 2.87 16 14 C -0.15 -3.03 5.66 -26.59 -0.15 -3.18 16 15 C 0.17 4.32 5.30 -3.71 -0.02 4.30 16 16 N -0.59 -15.00 3.00 -172.31 -0.52 -15.52 16 17 C -0.26 -7.05 9.58 -15.06 -0.14 -7.20 16 18 H 0.07 1.73 7.88 -52.49 -0.41 1.32 16 19 C 0.00 0.10 4.92 -17.43 -0.09 0.01 16 20 N -0.90 -26.62 11.20 55.49 0.62 -26.00 16 21 Si 0.90 21.84 29.59 -169.99 -5.03 16.81 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 25 C 0.15 3.10 6.52 -3.71 -0.02 3.08 16 26 C -0.14 -2.34 5.55 -26.61 -0.15 -2.48 16 27 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.04 0.16 8.14 -51.93 -0.42 -0.27 16 29 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 34 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 36 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.39 3.18 8.49 -40.82 -0.35 2.84 16 41 H 0.39 4.41 8.62 -40.82 -0.35 4.06 16 42 H 0.08 1.64 7.58 -51.93 -0.39 1.25 16 43 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 45 H 0.09 2.44 6.06 -51.93 -0.31 2.13 16 46 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 47 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 48 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 49 H 0.06 1.17 7.93 -51.92 -0.41 0.75 16 50 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 51 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 411.71 15.07 6.20 6.20 Total: -1.00 -35.03 411.71 -9.39 -44.42 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -9.40 Total: 2.21 kcal Atomic # 6 Polarization: 11.00 SS G_CDS: 0.15 Total: 11.15 kcal Atomic # 7 Polarization: -60.72 SS G_CDS: -0.56 Total: -61.28 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: -0.76 Total: -19.52 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.81 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -35.03 -9.39 -44.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609340512.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.438 kcal (2) G-P(sol) polarization free energy of solvation -35.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds