Wall clock time and date at job start Tue Mar 31 2020 05:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 114.00125 * 2 1 4 4 C 1.53003 * 109.46991 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.46944 * 65.00390 * 4 3 2 6 6 C 1.46505 * 119.99617 * 269.99346 * 5 4 3 7 7 C 1.52999 * 109.47151 * 270.00009 * 6 5 4 8 8 O 1.42895 * 109.46852 * 65.00736 * 7 6 5 9 9 C 1.42898 * 113.99980 * 179.97438 * 8 7 6 10 10 C 1.34773 * 120.00158 * 90.00072 * 5 4 3 11 11 O 1.21587 * 119.99684 * 180.02562 * 10 5 4 12 12 N 1.34774 * 120.00300 * 359.97438 * 10 5 4 13 13 C 1.46498 * 120.00360 * 180.02562 * 12 10 5 14 14 C 1.53071 * 109.44009 * 84.79625 * 13 12 10 15 15 C 1.53201 * 109.29371 * 181.23934 * 14 13 12 16 16 N 1.46928 * 108.89275 * 305.57634 * 15 14 13 17 17 C 1.36934 * 120.63265 * 233.51651 * 16 15 14 18 18 H 1.07997 * 119.99862 * 151.82898 * 17 16 15 19 19 C 1.38806 * 120.00015 * 331.83027 * 17 16 15 20 20 N 1.31624 * 120.00191 * 343.08772 * 19 17 16 21 21 Si 1.86800 * 120.00146 * 163.08448 * 19 17 16 22 22 H 1.48503 * 109.47142 * 60.00161 * 21 19 17 23 23 H 1.48498 * 109.47084 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47267 * 300.00095 * 21 19 17 25 25 C 1.46932 * 118.73342 * 53.53882 * 16 15 14 26 26 C 1.53045 * 109.46092 * 205.00269 * 13 12 10 27 27 H 1.09003 * 109.47072 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46843 * 300.00010 * 1 2 3 29 29 H 1.09003 * 109.46790 * 59.99874 * 1 2 3 30 30 H 1.09000 * 109.47107 * 60.00155 * 3 2 1 31 31 H 1.08997 * 109.46803 * 299.99679 * 3 2 1 32 32 H 1.08991 * 109.47428 * 304.99895 * 4 3 2 33 33 H 1.09006 * 109.47102 * 184.99762 * 4 3 2 34 34 H 1.08995 * 109.46878 * 30.00515 * 6 5 4 35 35 H 1.08997 * 109.46818 * 149.99995 * 6 5 4 36 36 H 1.08998 * 109.46673 * 185.00087 * 7 6 5 37 37 H 1.08991 * 109.47303 * 304.99922 * 7 6 5 38 38 H 1.09002 * 109.47422 * 179.97438 * 9 8 7 39 39 H 1.09001 * 109.47386 * 299.99327 * 9 8 7 40 40 H 1.09001 * 109.47517 * 59.99646 * 9 8 7 41 41 H 0.97005 * 119.99791 * 0.02562 * 12 10 5 42 42 H 1.08998 * 109.45866 * 324.97703 * 13 12 10 43 43 H 1.09002 * 109.39343 * 61.36176 * 14 13 12 44 44 H 1.09003 * 109.62467 * 301.25403 * 14 13 12 45 45 H 1.09000 * 109.58250 * 185.72113 * 15 14 13 46 46 H 1.08995 * 109.58477 * 65.43833 * 15 14 13 47 47 H 0.96995 * 120.00379 * 180.02562 * 20 19 17 48 48 H 1.08996 * 109.59017 * 66.18099 * 25 16 15 49 49 H 1.09009 * 109.58200 * 186.46074 * 25 16 15 50 50 H 1.09002 * 109.49555 * 58.67538 * 26 13 12 51 51 H 1.08992 * 109.52043 * 298.59539 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5639 -1.2510 6 6 4.1063 -0.8926 -1.3403 7 6 5.5231 -1.3044 -0.9352 8 8 5.7348 -0.9900 0.4426 9 6 7.0345 -1.3368 0.9248 10 6 4.2634 1.3329 -2.3200 11 8 4.6291 0.8177 -3.3588 12 7 4.1438 2.6728 -2.2379 13 6 4.4549 3.5086 -3.4002 14 6 3.2257 3.5967 -4.3080 15 6 3.5642 4.4458 -5.5375 16 7 4.0815 5.7461 -5.0898 17 6 3.5262 6.9121 -5.5449 18 1 3.5586 7.8008 -4.9321 19 6 2.9217 6.9518 -6.7938 20 7 3.1613 6.0007 -7.6715 21 14 1.7681 8.3552 -7.2289 22 1 2.5019 9.6435 -7.1444 23 1 1.2571 8.1657 -8.6102 24 1 0.6278 8.3717 -6.2777 25 6 5.2064 5.7713 -4.1449 26 6 4.8488 4.9105 -2.9292 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.6886 1.8464 0.8900 31 1 1.6887 1.8463 -0.8900 32 1 3.8508 0.5685 0.8426 33 1 3.9786 2.1765 0.0902 34 1 3.3858 -1.3632 -0.6714 35 1 3.9138 -1.2123 -2.3644 36 1 5.6469 -2.3767 -1.0863 37 1 6.2468 -0.7654 -1.5464 38 1 7.1157 -1.0660 1.9775 39 1 7.1894 -2.4098 0.8124 40 1 7.7900 -0.7987 0.3523 41 1 3.8517 3.0838 -1.4092 42 1 5.2823 3.0660 -3.9547 43 1 2.4042 4.0596 -3.7611 44 1 2.9332 2.5961 -4.6264 45 1 2.6658 4.5964 -6.1360 46 1 4.3207 3.9377 -6.1354 47 1 2.7391 6.0286 -8.5443 48 1 6.0979 5.3703 -4.6271 49 1 5.3933 6.7971 -3.8267 50 1 5.7106 4.8425 -2.2653 51 1 4.0133 5.3636 -2.3957 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609340741.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:58 Heat of formation + Delta-G solvation = -91.431808 kcal Electronic energy + Delta-G solvation = -30062.919374 eV Core-core repulsion = 25998.792564 eV Total energy + Delta-G solvation = -4064.126810 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 329.215 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.28517 -38.25238 -37.93264 -37.30882 -35.31187 -34.40706 -32.18968 -31.03321 -29.99945 -29.53194 -28.58265 -26.63565 -26.22893 -24.96387 -23.22984 -23.07295 -22.17647 -21.57286 -19.73929 -19.17687 -18.02429 -17.00333 -16.69396 -16.52482 -16.26001 -16.07804 -15.78886 -15.42053 -14.92967 -14.77571 -14.62200 -14.20877 -13.95725 -13.69158 -13.45983 -13.09181 -12.98279 -12.87666 -12.43232 -12.35053 -12.22695 -12.09316 -12.03010 -11.93887 -11.48416 -11.44653 -11.14639 -11.05472 -10.86544 -10.69923 -10.33932 -10.22007 -10.03769 -9.96579 -9.87608 -9.77202 -9.71346 -9.49687 -8.78440 -8.49223 -8.29916 -6.65069 -5.75619 -3.18835 2.78351 3.39263 3.39733 3.45671 3.46473 3.57060 3.66243 4.05184 4.51507 4.81967 4.95710 4.97233 5.02572 5.06402 5.15339 5.17069 5.19413 5.24263 5.26636 5.29225 5.35115 5.41749 5.43519 5.47309 5.50347 5.59111 5.69456 5.75125 5.88850 5.89486 6.13890 6.28130 6.39775 6.50266 6.52943 6.67435 6.69574 6.82488 6.89340 6.93485 6.97343 7.04054 7.19304 7.43456 7.72743 7.81935 8.16697 8.48201 8.84930 9.23970 9.87355 10.44448 11.32845 Molecular weight = 329.21amu Principal moments of inertia in cm(-1) A = 0.015993 B = 0.002872 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.340836 B = 9748.441227 C =10629.351368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.384 6.384 3 C 0.038 3.962 4 C 0.117 3.883 5 N -0.619 5.619 6 C 0.142 3.858 7 C 0.043 3.957 8 O -0.388 6.388 9 C 0.033 3.967 10 C 0.703 3.297 11 O -0.589 6.589 12 N -0.741 5.741 13 C 0.168 3.832 14 C -0.145 4.145 15 C 0.174 3.826 16 N -0.592 5.592 17 C -0.255 4.255 18 H 0.065 0.935 19 C 0.003 3.997 20 N -0.901 5.901 21 Si 0.902 3.098 22 H -0.283 1.283 23 H -0.291 1.291 24 H -0.284 1.284 25 C 0.149 3.851 26 C -0.138 4.138 27 H 0.084 0.916 28 H 0.039 0.961 29 H 0.041 0.959 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.055 0.945 37 H 0.054 0.946 38 H 0.082 0.918 39 H 0.038 0.962 40 H 0.039 0.961 41 H 0.388 0.612 42 H 0.080 0.920 43 H 0.051 0.949 44 H 0.053 0.947 45 H 0.088 0.912 46 H 0.020 0.980 47 H 0.255 0.745 48 H 0.020 0.980 49 H 0.057 0.943 50 H 0.054 0.946 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.701 -13.948 20.212 24.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.303 6.303 3 C -0.040 4.040 4 C -0.007 4.007 5 N -0.356 5.356 6 C 0.018 3.982 7 C -0.035 4.035 8 O -0.307 6.307 9 C -0.064 4.064 10 C 0.404 3.596 11 O -0.467 6.467 12 N -0.395 5.395 13 C 0.064 3.936 14 C -0.186 4.186 15 C 0.048 3.952 16 N -0.315 5.315 17 C -0.384 4.384 18 H 0.083 0.917 19 C -0.196 4.196 20 N -0.545 5.545 21 Si 0.732 3.268 22 H -0.209 1.209 23 H -0.216 1.216 24 H -0.211 1.211 25 C 0.022 3.978 26 C -0.178 4.178 27 H 0.102 0.898 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.116 0.884 33 H 0.103 0.897 34 H 0.109 0.891 35 H 0.114 0.886 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.101 0.899 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.222 0.778 42 H 0.098 0.902 43 H 0.070 0.930 44 H 0.072 0.928 45 H 0.106 0.894 46 H 0.038 0.962 47 H 0.065 0.935 48 H 0.038 0.962 49 H 0.076 0.924 50 H 0.073 0.927 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.892 -14.400 19.340 24.128 hybrid contribution -0.768 1.001 0.060 1.263 sum 0.124 -13.399 19.400 23.578 Atomic orbital electron populations 1.22727 0.81194 1.02603 0.99948 1.87873 1.19520 1.27492 1.95400 1.23158 0.94766 0.85369 1.00683 1.21539 0.91493 0.99458 0.88180 1.46947 1.71173 1.06335 1.11151 1.21325 0.94553 0.79286 1.03020 1.23112 0.98867 0.99041 0.82446 1.87854 1.32436 1.84407 1.26039 1.22696 0.84980 0.98963 0.99773 1.15995 0.78447 0.81760 0.83350 1.90913 1.54066 1.72837 1.28858 1.45665 1.72833 1.04604 1.16426 1.20893 0.98471 0.89184 0.85030 1.22567 0.96725 1.00080 0.99199 1.20745 0.99532 0.83701 0.91226 1.44096 1.33867 1.02556 1.51007 1.19124 1.31782 0.89802 0.97737 0.91735 1.25063 1.01468 0.97948 0.95125 1.70028 1.44242 1.34752 1.05491 0.86376 0.81240 0.82002 0.77155 1.20890 1.21648 1.21098 1.20831 0.90709 0.97040 0.89225 1.22331 1.00417 0.95044 1.00009 0.89763 0.94251 0.94042 0.92466 0.92828 0.88375 0.89671 0.89064 0.88592 0.92697 0.92778 0.89906 0.94330 0.94269 0.77781 0.90164 0.92997 0.92825 0.89406 0.96163 0.93538 0.96218 0.92399 0.92714 0.92012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.38 -4.06 9.53 -35.23 -0.34 -4.39 16 3 C 0.04 0.36 6.28 37.16 0.23 0.60 16 4 C 0.12 1.14 5.40 -4.04 -0.02 1.11 16 5 N -0.62 -7.82 2.40 -179.42 -0.43 -8.25 16 6 C 0.14 1.65 5.63 -4.04 -0.02 1.63 16 7 C 0.04 0.46 6.28 37.16 0.23 0.70 16 8 O -0.39 -4.10 9.53 -35.23 -0.34 -4.44 16 9 C 0.03 0.26 11.01 101.05 1.11 1.37 16 10 C 0.70 11.34 8.24 -86.92 -0.72 10.62 16 11 O -0.59 -11.90 15.58 5.29 0.08 -11.82 16 12 N -0.74 -11.06 4.94 -58.62 -0.29 -11.35 16 13 C 0.17 3.03 2.41 -67.87 -0.16 2.86 16 14 C -0.15 -2.98 5.66 -26.59 -0.15 -3.13 16 15 C 0.17 4.32 5.30 -3.71 -0.02 4.30 16 16 N -0.59 -14.95 3.00 -172.31 -0.52 -15.46 16 17 C -0.25 -7.00 9.58 -15.06 -0.14 -7.15 16 18 H 0.06 1.72 7.88 -52.49 -0.41 1.31 16 19 C 0.00 0.08 4.92 -17.43 -0.09 -0.01 16 20 N -0.90 -26.56 11.20 55.49 0.62 -25.94 16 21 Si 0.90 21.77 29.59 -169.99 -5.03 16.74 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 25 C 0.15 3.10 6.52 -3.71 -0.02 3.08 16 26 C -0.14 -2.33 5.55 -26.61 -0.15 -2.48 16 27 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.10 0.93 7.11 -51.93 -0.37 0.56 16 33 H 0.09 0.71 6.36 -51.93 -0.33 0.38 16 34 H 0.09 0.99 7.11 -51.93 -0.37 0.62 16 35 H 0.10 1.23 7.42 -51.93 -0.39 0.85 16 36 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 40 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.39 4.69 6.33 -40.82 -0.26 4.43 16 42 H 0.08 1.64 7.58 -51.93 -0.39 1.25 16 43 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.09 2.42 6.06 -51.93 -0.31 2.11 16 46 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 48 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.06 1.16 7.93 -51.92 -0.41 0.74 16 50 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 51 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 403.25 15.07 6.08 6.08 Total: -1.00 -33.34 403.25 -8.11 -41.45 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -9.15 Total: 2.50 kcal Atomic # 6 Polarization: 13.68 SS G_CDS: 1.20 Total: 14.88 kcal Atomic # 7 Polarization: -60.38 SS G_CDS: -0.62 Total: -61.00 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: -0.59 Total: -20.65 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.74 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.34 -8.11 -41.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609340741.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.982 kcal (2) G-P(sol) polarization free energy of solvation -33.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds