Wall clock time and date at job start Tue Mar 31 2020 05:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86799 * 119.99892 * 2 1 4 4 H 1.48501 * 109.47212 * 274.06584 * 3 2 1 5 5 H 1.48500 * 109.47460 * 34.06277 * 3 2 1 6 6 H 1.48504 * 109.47358 * 154.06770 * 3 2 1 7 7 C 1.38811 * 120.00350 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00483 * 197.52082 * 7 2 1 9 9 N 1.36937 * 119.99770 * 17.53084 * 7 2 1 10 10 C 1.46920 * 120.63187 * 207.99715 * 9 7 2 11 11 C 1.53187 * 108.77746 * 233.62812 * 10 9 7 12 12 C 1.53044 * 109.31285 * 305.36278 * 11 10 9 13 13 N 1.46504 * 109.45896 * 181.38496 * 12 11 10 14 14 C 1.37293 * 119.99646 * 154.97393 * 13 12 11 15 15 C 1.37992 * 120.51592 * 0.27421 * 14 13 12 16 16 C 1.39842 * 119.25104 * 180.26254 * 15 14 13 17 17 N 1.39183 * 119.87543 * 179.72679 * 16 15 14 18 18 C 1.35999 * 126.10812 * 179.70417 * 17 16 15 19 19 C 1.35198 * 107.59330 * 179.75505 * 18 17 16 20 20 C 1.40051 * 107.97576 * 0.39242 * 19 18 17 21 21 N 1.30756 * 108.38557 * 359.60183 * 20 19 18 22 22 N 1.32427 * 120.24773 * 359.46125 * 16 15 14 23 23 C 1.33873 * 121.08020 * 0.26770 * 22 16 15 24 24 N 1.31566 * 119.62875 * 180.02562 * 23 22 16 25 25 N 1.36966 * 120.50895 * 179.97438 * 14 13 12 26 26 H 0.96996 * 120.15048 * 0.02562 * 25 14 13 27 27 C 1.53035 * 109.52391 * 61.37236 * 12 11 10 28 28 C 1.46924 * 120.63031 * 28.01401 * 9 7 2 29 29 H 0.96999 * 120.00498 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.59068 * 113.83580 * 10 9 7 31 31 H 1.09006 * 109.70118 * 353.48693 * 10 9 7 32 32 H 1.09004 * 109.50137 * 185.41063 * 11 10 9 33 33 H 1.09001 * 109.52506 * 65.33217 * 11 10 9 34 34 H 1.09001 * 109.45643 * 301.35656 * 12 11 10 35 35 H 0.96996 * 119.99970 * 334.97118 * 13 12 11 36 36 H 1.08005 * 120.37236 * 359.97438 * 15 14 13 37 37 H 1.07998 * 126.20091 * 0.03774 * 18 17 16 38 38 H 1.08001 * 126.00937 * 180.23543 * 19 18 17 39 39 H 1.07998 * 125.80615 * 179.86196 * 20 19 18 40 40 H 0.96997 * 119.99602 * 0.02562 * 24 23 22 41 41 H 1.09001 * 109.50333 * 58.58252 * 27 12 11 42 42 H 1.09002 * 109.49450 * 178.68037 * 27 12 11 43 43 H 1.09005 * 109.59000 * 246.16083 * 28 9 7 44 44 H 1.09002 * 109.58824 * 6.44467 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4116 2.0961 -1.3965 5 1 1.4932 2.6264 0.7842 6 1 3.5881 1.4170 0.6123 7 6 2.0103 -1.2021 0.0005 8 1 3.0526 -1.2237 0.2821 9 7 1.3733 -2.3606 -0.3562 10 6 1.8145 -3.6541 0.1831 11 6 2.0774 -4.6110 -0.9838 12 6 0.8283 -4.6905 -1.8645 13 7 1.0648 -5.6303 -2.9632 14 6 0.0053 -6.2618 -3.5663 15 6 -1.2869 -6.0150 -3.1498 16 6 -2.3458 -6.6770 -3.7791 17 7 -3.6539 -6.4421 -3.3656 18 6 -4.7739 -7.0090 -3.8889 19 6 -5.8350 -6.5224 -3.2070 20 6 -5.3556 -5.6254 -2.2441 21 7 -4.0521 -5.5794 -2.3361 22 7 -2.1091 -7.5227 -4.7703 23 6 -0.8606 -7.7666 -5.1873 24 7 -0.6582 -8.6118 -6.1751 25 7 0.2143 -7.1420 -4.5947 26 1 1.1153 -7.3251 -4.9037 27 6 0.5168 -3.3056 -2.4363 28 6 0.2358 -2.3338 -1.2858 29 1 -0.4851 0.8400 -0.0004 30 1 1.0368 -4.0665 0.8258 31 1 2.7305 -3.5191 0.7585 32 1 2.3126 -5.6021 -0.5958 33 1 2.9164 -4.2433 -1.5746 34 1 -0.0158 -5.0351 -1.2672 35 1 1.9698 -5.8063 -3.2646 36 1 -1.4779 -5.3218 -2.3439 37 1 -4.8088 -7.7224 -4.6990 38 1 -6.8705 -6.7783 -3.3767 39 1 -5.9595 -5.0698 -1.5421 40 1 -1.4114 -9.0539 -6.5970 41 1 1.3704 -2.9496 -3.0132 42 1 -0.3591 -3.3673 -3.0822 43 1 -0.6708 -2.6386 -0.7629 44 1 0.1091 -1.3252 -1.6792 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611305340.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:25 Heat of formation + Delta-G solvation = 185.084767 kcal Electronic energy + Delta-G solvation = -27888.723047 eV Core-core repulsion = 24072.648223 eV Total energy + Delta-G solvation = -3816.074824 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.166 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.69298 -40.78045 -38.49880 -36.19210 -35.20226 -33.55280 -31.97243 -31.31374 -30.49773 -30.24744 -29.67068 -28.74576 -25.35024 -24.64812 -23.14777 -22.45629 -21.75089 -21.13672 -20.92366 -19.76740 -18.63674 -18.33758 -18.03113 -16.96510 -16.12563 -15.82904 -15.42698 -15.27570 -14.84310 -14.78429 -14.66358 -14.14826 -13.82514 -13.65801 -13.38486 -13.23101 -13.07609 -12.90212 -12.51619 -12.11450 -11.70003 -11.48150 -11.25699 -10.99566 -10.94800 -10.84069 -10.56130 -10.38317 -10.20174 -10.05787 -9.89229 -9.80681 -9.71012 -9.58047 -9.08104 -8.71560 -8.55832 -7.49841 -6.83152 -5.89991 -3.33502 0.50304 1.64133 1.92601 2.17904 2.18911 2.65540 3.21652 3.31421 3.38845 3.39999 3.81068 4.27216 4.39936 4.52477 4.82974 4.87519 4.97379 5.16388 5.22554 5.27467 5.31285 5.39036 5.44091 5.53693 5.56157 5.73666 5.79189 5.81190 6.00732 6.05403 6.18116 6.24126 6.33185 6.38825 6.44767 6.54805 6.64889 6.73414 6.88065 7.04239 7.17562 7.28236 7.39659 7.52466 7.69762 7.96615 8.32792 8.46354 9.08822 9.71512 10.26754 11.18612 Molecular weight = 329.17amu Principal moments of inertia in cm(-1) A = 0.013328 B = 0.003268 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.376901 B = 8566.386080 C =10054.633293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.006 3.994 3 Si 0.902 3.098 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.260 4.260 8 H 0.067 0.933 9 N -0.591 5.591 10 C 0.149 3.851 11 C -0.140 4.140 12 C 0.153 3.847 13 N -0.700 5.700 14 C 0.518 3.482 15 C -0.383 4.383 16 C 0.529 3.471 17 N -0.329 5.329 18 C 0.081 3.919 19 C -0.264 4.264 20 C 0.067 3.933 21 N -0.267 5.267 22 N -0.636 5.636 23 C 0.590 3.410 24 N -0.787 5.787 25 N -0.638 5.638 26 H 0.420 0.580 27 C -0.153 4.153 28 C 0.173 3.827 29 H 0.256 0.744 30 H 0.023 0.977 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.091 0.909 35 H 0.404 0.596 36 H 0.164 0.836 37 H 0.182 0.818 38 H 0.156 0.844 39 H 0.195 0.805 40 H 0.352 0.648 41 H 0.060 0.940 42 H 0.058 0.942 43 H 0.025 0.975 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.023 -13.461 -5.918 15.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.193 4.193 3 Si 0.732 3.268 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.389 4.389 8 H 0.085 0.915 9 N -0.314 5.314 10 C 0.021 3.979 11 C -0.180 4.180 12 C 0.051 3.949 13 N -0.326 5.326 14 C 0.290 3.710 15 C -0.420 4.420 16 C 0.280 3.720 17 N -0.108 5.108 18 C -0.059 4.059 19 C -0.292 4.292 20 C -0.124 4.124 21 N -0.084 5.084 22 N -0.374 5.374 23 C 0.220 3.780 24 N -0.429 5.429 25 N -0.267 5.267 26 H 0.258 0.742 27 C -0.193 4.193 28 C 0.047 3.953 29 H 0.066 0.934 30 H 0.041 0.959 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.109 0.891 35 H 0.240 0.760 36 H 0.181 0.819 37 H 0.199 0.801 38 H 0.174 0.826 39 H 0.212 0.788 40 H 0.170 0.830 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.043 0.957 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.745 -13.563 -6.335 15.431 hybrid contribution -0.057 0.754 -0.187 0.779 sum -3.802 -12.809 -6.522 14.869 Atomic orbital electron populations 1.70019 1.05254 1.25750 1.53169 1.25053 0.95277 0.98504 1.00476 0.86287 0.79197 0.83679 0.77651 1.21434 1.21674 1.20361 1.19171 0.92820 0.84771 1.42166 0.91547 1.44105 1.36421 1.01451 1.49395 1.20831 0.98379 0.86634 0.92019 1.22391 0.96229 1.00306 0.99044 1.21466 0.99944 0.88227 0.85305 1.45201 1.06068 1.44518 1.36770 1.17707 0.89498 0.81999 0.81835 1.20188 0.87194 1.18998 1.15615 1.17825 0.81407 0.86191 0.86539 1.45799 1.03627 1.34087 1.27242 1.22973 0.85202 0.98425 0.99279 1.21726 1.00064 1.05423 1.01974 1.24305 0.91806 0.97642 0.98648 1.77649 1.14215 1.11290 1.05209 1.69179 1.19704 1.27336 1.21158 1.19327 0.78497 0.89892 0.90281 1.69932 1.38791 1.19183 1.14946 1.42440 1.11728 1.40578 1.31917 0.74229 1.22705 1.01103 0.94536 1.00982 1.20781 0.88915 0.98239 0.87384 0.93442 0.95904 0.92015 0.92225 0.91507 0.89115 0.75983 0.81851 0.80064 0.82605 0.78837 0.82963 0.92154 0.92334 0.95705 0.88989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.85 11.22 55.49 0.62 -24.22 16 2 C 0.01 0.16 4.90 -17.43 -0.09 0.08 16 3 Si 0.90 20.75 29.59 -169.99 -5.03 15.72 16 4 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.26 -6.65 9.58 -15.06 -0.14 -6.80 16 8 H 0.07 1.67 7.89 -52.49 -0.41 1.26 16 9 N -0.59 -13.39 2.99 -172.32 -0.52 -13.91 16 10 C 0.15 2.69 6.51 -3.72 -0.02 2.67 16 11 C -0.14 -1.91 5.55 -26.61 -0.15 -2.06 16 12 C 0.15 2.07 2.10 -67.89 -0.14 1.93 16 13 N -0.70 -7.42 5.18 -53.52 -0.28 -7.69 16 14 C 0.52 6.24 7.72 -153.01 -1.18 5.06 16 15 C -0.38 -5.42 8.41 -39.07 -0.33 -5.75 16 16 C 0.53 7.85 7.57 -154.55 -1.17 6.68 16 17 N -0.33 -4.65 3.79 -12.00 -0.05 -4.70 16 18 C 0.08 0.93 11.10 -16.79 -0.19 0.75 16 19 C -0.26 -2.55 10.80 -39.98 -0.43 -2.98 16 20 C 0.07 0.72 12.02 -17.33 -0.21 0.51 16 21 N -0.27 -3.82 11.85 30.65 0.36 -3.45 16 22 N -0.64 -9.44 9.95 -13.11 -0.13 -9.57 16 23 C 0.59 8.46 8.69 -323.18 -2.81 5.65 16 24 N -0.79 -11.49 14.20 29.70 0.42 -11.07 16 25 N -0.64 -7.38 5.46 -13.01 -0.07 -7.45 16 26 H 0.42 3.82 8.93 -40.82 -0.36 3.46 16 27 C -0.15 -2.54 5.56 -26.61 -0.15 -2.69 16 28 C 0.17 3.75 5.31 -3.71 -0.02 3.73 16 29 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 30 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 1.10 7.94 -51.93 -0.41 0.69 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.09 1.32 6.48 -51.93 -0.34 0.98 16 35 H 0.40 3.27 8.72 -40.82 -0.36 2.92 16 36 H 0.16 2.49 5.76 -52.48 -0.30 2.19 16 37 H 0.18 1.75 8.05 -52.49 -0.42 1.32 16 38 H 0.16 1.02 8.06 -52.49 -0.42 0.60 16 39 H 0.19 1.42 8.06 -52.49 -0.42 1.00 16 40 H 0.35 4.94 8.89 -40.82 -0.36 4.58 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.06 0.96 7.66 -51.93 -0.40 0.56 16 43 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.09 2.30 6.06 -51.93 -0.31 1.99 16 LS Contribution 362.87 15.07 5.47 5.47 Total: -1.00 -30.99 362.87 -12.00 -42.99 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -5.78 Total: 11.09 kcal Atomic # 6 Polarization: 13.82 SS G_CDS: -7.02 Total: 6.80 kcal Atomic # 7 Polarization: -82.43 SS G_CDS: 0.37 Total: -82.06 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.03 Total: 15.72 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.99 -12.00 -42.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611305340.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 228.075 kcal (2) G-P(sol) polarization free energy of solvation -30.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 197.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 185.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds