Wall clock time and date at job start Tue Mar 31 2020 05:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86806 * 119.99801 * 2 1 4 4 H 1.48493 * 109.46956 * 270.00034 * 3 2 1 5 5 H 1.48501 * 109.46925 * 30.00357 * 3 2 1 6 6 H 1.48502 * 109.47012 * 150.00171 * 3 2 1 7 7 C 1.38804 * 120.00297 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99775 * 0.02562 * 7 2 1 9 9 S 1.76205 * 120.00248 * 179.97438 * 7 2 1 10 10 C 1.76195 * 99.99901 * 185.65626 * 9 7 2 11 11 C 1.39110 * 120.19106 * 6.85682 * 10 9 7 12 12 C 1.37910 * 120.04977 * 180.02562 * 11 10 9 13 13 C 1.38660 * 120.43889 * 359.97438 * 12 11 10 14 14 C 1.37809 * 120.38295 * 0.02562 * 13 12 11 15 15 C 1.39678 * 119.93418 * 0.02562 * 14 13 12 16 16 C 1.47433 * 120.21285 * 180.02562 * 15 14 13 17 17 O 1.21606 * 120.00088 * 179.97438 * 16 15 14 18 18 N 1.34783 * 119.99777 * 359.97438 * 16 15 14 19 19 C 1.46498 * 119.99450 * 179.97438 * 18 16 15 20 20 C 1.53009 * 109.46715 * 179.97438 * 19 18 16 21 21 S 1.81391 * 109.46970 * 179.97438 * 20 19 18 22 22 N 1.65604 * 104.45041 * 180.02562 * 21 20 19 23 23 O 1.42103 * 110.54307 * 291.62629 * 21 20 19 24 24 O 1.42100 * 110.54280 * 68.37656 * 21 20 19 25 25 H 0.96996 * 120.00115 * 359.97438 * 1 2 3 26 26 H 1.07997 * 119.97733 * 359.97438 * 11 10 9 27 27 H 1.08007 * 119.78572 * 179.97438 * 12 11 10 28 28 H 1.08006 * 119.80903 * 180.02562 * 13 12 11 29 29 H 1.07994 * 120.02855 * 179.72374 * 14 13 12 30 30 H 0.97003 * 119.99723 * 0.02562 * 18 16 15 31 31 H 1.09000 * 109.47061 * 299.99762 * 19 18 16 32 32 H 1.09003 * 109.47311 * 60.00209 * 19 18 16 33 33 H 1.08997 * 109.47224 * 300.00601 * 20 19 18 34 34 H 1.09003 * 109.46801 * 60.00213 * 20 19 18 35 35 H 0.97000 * 120.00241 * 149.99989 * 22 21 20 36 36 H 0.97002 * 119.99734 * 330.00832 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4970 2.0465 -1.4000 5 1 1.4469 2.6527 0.7001 6 1 3.5471 1.4403 0.7000 7 6 2.0096 -1.2020 -0.0005 8 1 1.4696 -2.1374 -0.0014 9 16 3.7717 -1.2020 -0.0012 10 6 4.0776 -2.9287 -0.1727 11 6 3.0233 -3.8064 -0.4037 12 6 3.2659 -5.1574 -0.5370 13 6 4.5580 -5.6517 -0.4429 14 6 5.6158 -4.7984 -0.2145 15 6 5.3879 -3.4273 -0.0759 16 6 6.5151 -2.5088 0.1681 17 8 6.3123 -1.3158 0.2876 18 7 7.7702 -2.9915 0.2586 19 6 8.8903 -2.0787 0.5005 20 6 10.1946 -2.8765 0.5597 21 16 11.5815 -1.7462 0.8585 22 7 12.9141 -2.7287 0.8983 23 8 11.7963 -0.9109 -0.2709 24 8 11.5077 -1.2017 2.1689 25 1 -0.4850 0.8400 0.0004 26 1 2.0139 -3.4296 -0.4779 27 1 2.4442 -5.8351 -0.7158 28 1 4.7365 -6.7116 -0.5493 29 1 6.6193 -5.1901 -0.1378 30 1 7.9320 -3.9432 0.1629 31 1 8.9461 -1.3499 -0.3081 32 1 8.7386 -1.5603 1.4472 33 1 10.1384 -3.6051 1.3684 34 1 10.3465 -3.3952 -0.3869 35 1 13.7768 -2.3876 0.6150 36 1 12.8318 -3.6453 1.2049 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700872485.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:28 Heat of formation + Delta-G solvation = -77.191262 kcal Electronic energy + Delta-G solvation = -22734.815875 eV Core-core repulsion = 19051.594378 eV Total energy + Delta-G solvation = -3683.221497 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 330.054 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.75226 -37.72259 -37.40157 -36.31130 -35.44166 -33.65703 -32.74379 -31.83909 -30.44590 -30.05727 -25.94192 -24.64294 -22.83285 -22.02872 -20.51341 -19.83856 -18.52809 -17.96437 -17.77893 -17.18929 -16.61227 -16.17461 -15.89505 -15.55211 -15.24411 -15.20269 -14.63267 -14.09587 -14.05536 -13.80397 -13.28403 -12.85018 -12.58066 -12.55105 -12.48392 -12.43816 -12.32694 -11.94071 -11.91243 -11.48438 -11.36083 -11.20035 -10.95144 -10.87824 -10.55410 -9.90330 -9.73558 -9.50148 -9.10441 -8.88369 -8.49505 -8.29255 -6.85364 -6.50786 -4.22730 -0.24008 1.33794 1.85394 2.41878 2.83529 3.09882 3.19927 3.29778 3.36071 3.40809 3.46015 3.81416 3.94761 4.13208 4.30992 4.46117 4.59829 4.81336 4.92540 5.07535 5.15857 5.27715 5.42212 5.46550 5.50178 5.79890 5.99204 6.19804 6.37682 6.44369 6.55686 6.67425 6.88905 7.00263 7.39244 7.60888 7.72464 8.31144 8.50874 8.93108 10.56270 Molecular weight = 330.05amu Principal moments of inertia in cm(-1) A = 0.014619 B = 0.003201 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.859033 B = 8744.484338 C =10466.015440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.104 3.896 3 Si 0.849 3.151 4 H -0.262 1.262 5 H -0.268 1.268 6 H -0.234 1.234 7 C -0.580 4.580 8 H 0.106 0.894 9 S 0.090 5.910 10 C -0.030 4.030 11 C -0.143 4.143 12 C -0.075 4.075 13 C -0.178 4.178 14 C -0.065 4.065 15 C -0.174 4.174 16 C 0.554 3.446 17 O -0.507 6.507 18 N -0.733 5.733 19 C 0.135 3.865 20 C -0.645 4.645 21 S 2.627 3.373 22 N -1.251 6.251 23 O -0.955 6.955 24 O -0.953 6.953 25 H 0.275 0.725 26 H 0.147 0.853 27 H 0.116 0.884 28 H 0.114 0.886 29 H 0.112 0.888 30 H 0.399 0.601 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.141 0.859 34 H 0.143 0.857 35 H 0.421 0.579 36 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.266 -12.345 0.281 25.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.108 4.108 3 Si 0.673 3.327 4 H -0.187 1.187 5 H -0.193 1.193 6 H -0.157 1.157 7 C -0.726 4.726 8 H 0.124 0.876 9 S 0.351 5.649 10 C -0.149 4.149 11 C -0.168 4.168 12 C -0.097 4.097 13 C -0.201 4.201 14 C -0.085 4.085 15 C -0.189 4.189 16 C 0.343 3.657 17 O -0.384 6.384 18 N -0.389 5.389 19 C 0.009 3.991 20 C -0.773 4.773 21 S 2.716 3.284 22 N -0.924 5.924 23 O -0.945 6.945 24 O -0.942 6.942 25 H 0.085 0.915 26 H 0.165 0.835 27 H 0.135 0.865 28 H 0.132 0.868 29 H 0.130 0.870 30 H 0.235 0.765 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.159 0.841 34 H 0.161 0.839 35 H 0.251 0.749 36 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 22.373 -8.943 0.607 24.102 hybrid contribution -0.590 -2.001 -0.313 2.109 sum 21.783 -10.944 0.293 24.380 Atomic orbital electron populations 1.69903 1.06173 1.28363 1.45027 1.24809 0.94537 0.99086 0.92321 0.86880 0.82073 0.83301 0.80437 1.18682 1.19301 1.15741 1.23522 0.91789 0.98371 1.58956 0.87611 1.84143 1.05233 0.97346 1.78140 1.22532 0.93933 1.01445 0.97022 1.21587 1.00161 0.92797 1.02262 1.21155 0.96498 0.95150 0.96927 1.20716 0.92907 0.98831 1.07694 1.20872 0.98060 0.91907 0.97669 1.19082 0.91915 0.93178 1.14728 1.18346 0.82222 0.88269 0.76858 1.90787 1.83205 1.15728 1.48660 1.45721 1.05823 1.10546 1.76820 1.20805 0.82453 0.92095 1.03758 1.30821 1.16104 1.17456 1.12954 1.04459 0.74866 0.74234 0.74871 1.53230 1.26072 1.27973 1.85082 1.93637 1.83757 1.63922 1.53154 1.93656 1.85720 1.75043 1.39733 0.91458 0.83547 0.86548 0.86755 0.87013 0.76545 0.89771 0.89768 0.84108 0.83866 0.74898 0.76112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.99 13.96 55.49 0.77 -24.22 16 2 C 0.10 2.92 5.50 -17.46 -0.10 2.83 16 3 Si 0.85 20.90 27.74 -169.99 -4.71 16.18 16 4 H -0.26 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.23 -5.77 6.74 56.52 0.38 -5.39 16 7 C -0.58 -16.17 9.54 30.94 0.30 -15.87 16 8 H 0.11 3.03 5.21 -52.48 -0.27 2.75 16 9 S 0.09 2.26 16.53 -107.50 -1.78 0.49 16 10 C -0.03 -0.66 6.14 -38.39 -0.24 -0.89 16 11 C -0.14 -2.92 9.22 -39.38 -0.36 -3.28 16 12 C -0.08 -1.22 10.03 -39.55 -0.40 -1.62 16 13 C -0.18 -2.49 10.02 -39.58 -0.40 -2.88 16 14 C -0.06 -0.92 9.53 -39.20 -0.37 -1.29 16 15 C -0.17 -3.19 5.89 -104.75 -0.62 -3.80 16 16 C 0.55 9.83 7.75 -12.51 -0.10 9.74 16 17 O -0.51 -11.03 13.77 5.27 0.07 -10.96 16 18 N -0.73 -8.87 5.51 -61.37 -0.34 -9.21 16 19 C 0.13 1.42 5.68 -4.04 -0.02 1.39 16 20 C -0.64 -3.29 6.29 37.16 0.23 -3.06 16 21 S 2.63 18.43 5.97 -107.50 -0.64 17.79 16 22 N -1.25 -3.91 9.36 60.35 0.57 -3.34 16 23 O -0.96 -10.65 18.10 -57.54 -1.04 -11.70 16 24 O -0.95 -10.83 18.10 -57.54 -1.04 -11.87 16 25 H 0.28 7.39 8.31 -40.82 -0.34 7.05 16 26 H 0.15 3.26 5.03 -52.49 -0.26 2.99 16 27 H 0.12 1.57 8.06 -52.48 -0.42 1.15 16 28 H 0.11 1.23 8.06 -52.48 -0.42 0.80 16 29 H 0.11 1.08 6.40 -52.49 -0.34 0.75 16 30 H 0.40 3.39 6.50 -40.82 -0.27 3.12 16 31 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.14 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.14 0.38 8.14 -51.92 -0.42 -0.04 16 35 H 0.42 1.06 8.96 -34.48 -0.31 0.75 16 36 H 0.41 0.08 8.96 -34.47 -0.31 -0.23 16 LS Contribution 333.67 15.07 5.03 5.03 Total: -1.00 -39.12 333.67 -8.63 -47.75 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -3.45 Total: 2.80 kcal Atomic # 6 Polarization: -16.67 SS G_CDS: -2.07 Total: -18.74 kcal Atomic # 7 Polarization: -37.78 SS G_CDS: 1.00 Total: -36.77 kcal Atomic # 8 Polarization: -32.52 SS G_CDS: -2.01 Total: -34.53 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.71 Total: 16.18 kcal Atomic # 16 Polarization: 20.70 SS G_CDS: -2.42 Total: 18.28 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -39.12 -8.63 -47.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700872485.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.440 kcal (2) G-P(sol) polarization free energy of solvation -39.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds