Wall clock time and date at job start Tue Mar 31 2020 05:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86805 * 119.99685 * 2 1 4 4 H 1.48494 * 109.47376 * 270.00103 * 3 2 1 5 5 H 1.48506 * 109.46878 * 30.00422 * 3 2 1 6 6 H 1.48506 * 109.46835 * 149.99935 * 3 2 1 7 7 C 1.38948 * 120.00573 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99859 * 0.02562 * 7 2 1 9 9 N 1.37098 * 120.00214 * 179.97438 * 7 2 1 10 10 C 1.34781 * 119.99668 * 179.97438 * 9 7 2 11 11 O 1.21285 * 120.00088 * 0.02562 * 10 9 7 12 12 C 1.50697 * 119.99579 * 180.02562 * 10 9 7 13 13 O 1.45203 * 109.47084 * 180.02562 * 12 10 9 14 14 C 1.34728 * 116.99744 * 180.02562 * 13 12 10 15 15 O 1.21482 * 120.00206 * 359.97438 * 14 13 12 16 16 C 1.47606 * 119.99458 * 179.97438 * 14 13 12 17 17 C 1.39719 * 120.11621 * 304.72575 * 16 14 13 18 18 C 1.38002 * 119.84975 * 179.72558 * 17 16 14 19 19 F 1.35100 * 119.96219 * 180.25610 * 18 17 16 20 20 C 1.38890 * 120.07443 * 0.51027 * 18 17 16 21 21 F 1.35103 * 119.88118 * 179.76509 * 20 18 17 22 22 C 1.38576 * 120.23016 * 359.48947 * 20 18 17 23 23 C 1.37872 * 120.15387 * 0.25622 * 22 20 18 24 24 N 1.48016 * 120.04190 * 179.97438 * 23 22 20 25 25 O 1.21803 * 119.99980 * 353.44039 * 24 23 22 26 26 O 1.21796 * 120.00314 * 173.45144 * 24 23 22 27 27 H 0.96995 * 120.00445 * 0.02562 * 1 2 3 28 28 H 0.96999 * 119.99922 * 0.02562 * 9 7 2 29 29 H 1.08994 * 109.47499 * 60.00131 * 12 10 9 30 30 H 1.09006 * 109.47227 * 300.00045 * 12 10 9 31 31 H 1.08004 * 120.07479 * 359.96244 * 17 16 14 32 32 H 1.08002 * 119.92517 * 180.22913 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0466 -1.4000 5 1 1.4454 2.6527 0.7002 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2033 -0.0005 8 1 1.4690 -2.1386 -0.0014 9 7 3.3799 -1.2032 -0.0011 10 6 4.0538 -2.3704 -0.0011 11 8 3.4474 -3.4208 -0.0011 12 6 5.5608 -2.3703 -0.0011 13 8 6.0449 -3.7392 -0.0017 14 6 7.3806 -3.9156 -0.0012 15 8 8.1205 -2.9521 -0.0008 16 6 7.9448 -5.2796 -0.0012 17 6 7.5762 -6.1907 0.9918 18 6 8.1027 -7.4663 0.9833 19 9 7.7439 -8.3508 1.9394 20 6 9.0051 -7.8402 -0.0041 21 9 9.5218 -9.0885 -0.0060 22 6 9.3730 -6.9391 -0.9906 23 6 8.8488 -5.6640 -0.9941 24 7 9.2438 -4.7033 -2.0486 25 8 10.1199 -4.9966 -2.8424 26 8 8.6931 -3.6195 -2.1225 27 1 -0.4850 0.8400 -0.0004 28 1 3.8649 -0.3631 -0.0007 29 1 5.9241 -1.8565 0.8889 30 1 5.9241 -1.8564 -0.8911 31 1 6.8779 -5.8985 1.7622 32 1 10.0722 -7.2363 -1.7581 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731245519.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:32 Heat of formation + Delta-G solvation = -159.601477 kcal Electronic energy + Delta-G solvation = -27192.734965 eV Core-core repulsion = 22373.513540 eV Total energy + Delta-G solvation = -4819.221424 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.059 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.45108 -49.51064 -42.71318 -40.85212 -39.46202 -38.35953 -36.97729 -36.37052 -34.12594 -32.65907 -32.26749 -31.84369 -28.85293 -27.21761 -25.41660 -24.44743 -23.50427 -21.84890 -20.10623 -19.73737 -19.33147 -18.98761 -18.65831 -18.10846 -17.94108 -17.84863 -17.25077 -17.06034 -16.48171 -16.22161 -15.86142 -15.66412 -15.31416 -15.00043 -14.63894 -14.53201 -14.04735 -13.80696 -13.33166 -13.06538 -12.80368 -12.61799 -12.38261 -12.26379 -11.89276 -11.56525 -11.44445 -11.28724 -10.98350 -10.69172 -10.66476 -10.40132 -10.09039 -9.99412 -9.72253 -8.74889 -8.34085 -6.43197 -3.96652 -1.08172 -0.39797 0.60976 0.70877 1.65781 1.89974 2.26515 2.61733 2.96395 3.01801 3.10541 3.11285 3.34125 3.48860 3.64826 3.73995 4.00624 4.05654 4.30355 4.46126 4.63040 4.71793 4.78969 5.06481 5.23267 5.36678 5.46419 5.59921 5.83969 6.13647 7.18100 7.30656 7.44210 7.95400 8.42311 8.78892 9.24974 9.59094 10.68826 Molecular weight = 330.06amu Principal moments of inertia in cm(-1) A = 0.018534 B = 0.002870 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.396033 B = 9754.407078 C =10820.481464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.046 3.954 3 Si 0.879 3.121 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.267 1.267 7 C -0.310 4.310 8 H 0.123 0.877 9 N -0.576 5.576 10 C 0.446 3.554 11 O -0.559 6.559 12 C 0.058 3.942 13 O -0.310 6.310 14 C 0.502 3.498 15 O -0.459 6.459 16 C -0.018 4.018 17 C -0.077 4.077 18 C 0.125 3.875 19 F -0.100 7.100 20 C 0.096 3.904 21 F -0.103 7.103 22 C -0.066 4.066 23 C 0.010 3.990 24 N 0.020 4.980 25 O -0.144 6.144 26 O -0.113 6.113 27 H 0.276 0.724 28 H 0.374 0.626 29 H 0.093 0.907 30 H 0.098 0.902 31 H 0.186 0.814 32 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.847 -12.603 1.391 24.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.158 4.158 3 Si 0.705 3.295 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.193 1.193 7 C -0.438 4.438 8 H 0.140 0.860 9 N -0.216 5.216 10 C 0.231 3.769 11 O -0.441 6.441 12 C -0.019 4.019 13 O -0.225 6.225 14 C 0.341 3.659 15 O -0.345 6.345 16 C -0.021 4.021 17 C -0.096 4.096 18 C 0.104 3.896 19 F -0.078 7.078 20 C 0.074 3.926 21 F -0.081 7.081 22 C -0.085 4.085 23 C -0.073 4.073 24 N 0.545 4.455 25 O -0.359 6.359 26 O -0.336 6.336 27 H 0.087 0.913 28 H 0.207 0.793 29 H 0.111 0.889 30 H 0.116 0.884 31 H 0.203 0.797 32 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 20.233 -13.451 1.944 24.374 hybrid contribution 0.758 1.289 -0.060 1.496 sum 20.991 -12.163 1.884 24.333 Atomic orbital electron populations 1.69607 1.05695 1.27872 1.48043 1.25042 0.95519 0.98121 0.97114 0.86681 0.79852 0.83780 0.79223 1.19277 1.19936 1.19279 1.19419 0.78593 0.96903 1.48871 0.85986 1.42016 1.07656 1.05686 1.66215 1.19101 0.86705 0.85225 0.85850 1.90607 1.68964 1.30688 1.53820 1.22933 0.95348 0.79221 1.04403 1.86628 1.20729 1.32426 1.82684 1.20309 0.82563 0.88010 0.74969 1.90957 1.60511 1.40430 1.42604 1.18760 0.95130 0.93807 0.94371 1.21312 0.99283 0.89440 0.99565 1.17657 0.95867 0.88369 0.87715 1.91671 1.89605 1.66394 1.60154 1.17328 0.97053 0.82030 0.96156 1.91657 1.84571 1.36100 1.95812 1.20703 0.99415 0.89556 0.98846 1.20702 1.02712 0.91212 0.92707 1.43250 1.00219 1.01329 1.00677 1.94558 1.23595 1.82262 1.35535 1.94719 1.54270 1.07797 1.76795 0.91310 0.79268 0.88903 0.88403 0.79704 0.79680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.63 13.96 55.50 0.77 -23.86 16 2 C 0.05 1.22 5.50 -17.47 -0.10 1.13 16 3 Si 0.88 18.57 27.74 -169.99 -4.71 13.86 16 4 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 5 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 6 H -0.27 -5.11 6.52 56.52 0.37 -4.74 16 7 C -0.31 -8.43 10.16 -14.93 -0.15 -8.58 16 8 H 0.12 3.80 7.39 -52.48 -0.39 3.41 16 9 N -0.58 -13.14 5.09 -10.96 -0.06 -13.19 16 10 C 0.45 9.81 7.86 -10.98 -0.09 9.72 16 11 O -0.56 -14.65 16.08 -14.11 -0.23 -14.87 16 12 C 0.06 0.96 5.95 36.00 0.21 1.18 16 13 O -0.31 -5.04 9.77 -47.25 -0.46 -5.50 16 14 C 0.50 7.01 5.98 34.55 0.21 7.22 16 15 O -0.46 -7.16 14.55 -27.27 -0.40 -7.56 16 16 C -0.02 -0.19 5.76 -104.99 -0.60 -0.79 16 17 C -0.08 -0.61 9.76 -39.11 -0.38 -0.99 16 18 C 0.12 0.89 7.30 -39.43 -0.29 0.60 16 19 F -0.10 -0.77 17.18 2.25 0.04 -0.73 16 20 C 0.10 0.64 7.31 -39.22 -0.29 0.35 16 21 F -0.10 -0.72 17.18 2.25 0.04 -0.68 16 22 C -0.07 -0.45 9.52 -39.59 -0.38 -0.83 16 23 C 0.01 0.10 6.85 -79.55 -0.55 -0.45 16 24 N 0.02 0.26 4.45 34.16 0.15 0.41 16 25 O -0.14 -1.76 18.46 -29.46 -0.54 -2.31 16 26 O -0.11 -1.73 14.99 -37.09 -0.56 -2.29 16 27 H 0.28 7.17 8.31 -40.82 -0.34 6.83 16 28 H 0.37 7.38 5.76 -40.82 -0.24 7.15 16 29 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 30 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 31 H 0.19 1.19 8.06 -52.48 -0.42 0.76 16 32 H 0.19 0.87 7.62 -52.49 -0.40 0.47 16 LS Contribution 315.52 15.07 4.75 4.75 Total: -1.00 -33.14 315.52 -5.05 -38.19 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -1.46 Total: 5.21 kcal Atomic # 6 Polarization: 10.96 SS G_CDS: -2.40 Total: 8.57 kcal Atomic # 7 Polarization: -37.51 SS G_CDS: 0.87 Total: -36.64 kcal Atomic # 8 Polarization: -30.34 SS G_CDS: -2.18 Total: -32.52 kcal Atomic # 9 Polarization: -1.49 SS G_CDS: 0.08 Total: -1.41 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -4.71 Total: 13.86 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -33.14 -5.05 -38.19 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731245519.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.412 kcal (2) G-P(sol) polarization free energy of solvation -33.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds