Wall clock time and date at job start Tue Mar 31 2020 06:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00399 * 2 1 4 4 H 1.48500 * 109.47227 * 270.00209 * 3 2 1 5 5 H 1.48500 * 109.46628 * 29.99896 * 3 2 1 6 6 H 1.48493 * 109.47109 * 149.99555 * 3 2 1 7 7 C 1.37884 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99838 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00200 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.46861 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46969 * 179.97438 * 10 9 7 12 12 N 1.46506 * 109.47035 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99873 * 179.97438 * 12 11 10 14 14 O 1.21579 * 119.99978 * 0.02562 * 13 12 11 15 15 C 1.47686 * 120.00105 * 179.97438 * 13 12 11 16 16 C 1.39658 * 120.16737 * 359.73531 * 15 13 12 17 17 C 1.37855 * 119.88224 * 179.71921 * 16 15 13 18 18 S 1.76200 * 119.89271 * 180.27355 * 17 16 15 19 19 N 1.65604 * 107.21459 * 270.27383 * 18 17 16 20 20 O 1.42097 * 106.40232 * 23.81657 * 18 17 16 21 21 O 1.42103 * 106.40068 * 156.73955 * 18 17 16 22 22 C 1.38459 * 120.21482 * 0.54800 * 17 16 15 23 23 C 1.38210 * 120.33916 * 359.72365 * 22 17 16 24 24 C 1.38321 * 120.11748 * 0.02562 * 23 22 17 25 25 F 1.35102 * 120.10976 * 179.97438 * 24 23 22 26 26 H 0.97002 * 119.99797 * 0.02562 * 1 2 3 27 27 H 1.08992 * 109.46824 * 60.00052 * 9 7 2 28 28 H 1.08996 * 109.46811 * 299.99879 * 9 7 2 29 29 H 1.09004 * 109.47298 * 60.00075 * 10 9 7 30 30 H 1.09004 * 109.47552 * 299.99947 * 10 9 7 31 31 H 1.09004 * 109.46930 * 59.99996 * 11 10 9 32 32 H 1.09000 * 109.47312 * 299.99939 * 11 10 9 33 33 H 0.96999 * 120.00080 * 0.02562 * 12 11 10 34 34 H 1.08001 * 120.06007 * 359.96943 * 16 15 13 35 35 H 0.96999 * 120.00392 * 0.02562 * 19 18 17 36 36 H 0.97004 * 119.99599 * 179.97438 * 19 18 17 37 37 H 1.08004 * 119.83186 * 179.69929 * 22 17 16 38 38 H 1.08003 * 119.94094 * 179.97438 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4801 -4.9871 0.0001 12 7 2.4322 -6.1007 -0.0005 13 6 1.9829 -7.3714 0.0004 14 8 0.7875 -7.5935 0.0013 15 6 2.9425 -8.4939 -0.0008 16 6 4.3163 -8.2428 -0.0084 17 6 5.2069 -9.2951 -0.0037 18 16 6.9402 -8.9786 -0.0060 19 7 7.4202 -8.8909 -1.5886 20 8 7.1112 -7.6770 0.5379 21 8 7.5602 -10.1358 0.5377 22 6 4.7437 -10.5999 -0.0027 23 6 3.3861 -10.8588 -0.0008 24 6 2.4802 -9.8136 -0.0004 25 9 1.1531 -10.0668 0.0010 26 1 -0.4850 0.8401 -0.0004 27 1 0.6240 -2.5567 -0.8902 28 1 0.6247 -2.5571 0.8897 29 1 2.8719 -3.6044 0.8895 30 1 2.8719 -3.6044 -0.8905 31 1 0.8531 -5.0451 -0.8897 32 1 0.8538 -5.0446 0.8903 33 1 3.3858 -5.9235 -0.0008 34 1 4.6804 -7.2261 -0.0140 35 1 6.7711 -9.0091 -2.2996 36 1 8.3505 -8.7206 -1.8045 37 1 5.4470 -11.4197 -0.0039 38 1 3.0319 -11.8791 -0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733370744.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:49 Heat of formation + Delta-G solvation = -140.019518 kcal Electronic energy + Delta-G solvation = -25019.465085 eV Core-core repulsion = 20903.139069 eV Total energy + Delta-G solvation = -4116.326016 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.088 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.42783 -40.36773 -38.73704 -37.59805 -36.27536 -35.57023 -33.67499 -33.50887 -32.32094 -31.53925 -30.93516 -26.96200 -24.78036 -23.87981 -22.97642 -21.06224 -20.66770 -19.85006 -18.95630 -18.13408 -17.85532 -17.42865 -17.01680 -16.39215 -16.26135 -16.11622 -15.80229 -15.38084 -15.31681 -15.02079 -14.46086 -14.00208 -13.97149 -13.83213 -13.58922 -13.14887 -12.61208 -12.54740 -12.46208 -12.31659 -12.18547 -11.89128 -11.81206 -11.57653 -10.98351 -10.92229 -10.78299 -10.62189 -10.14979 -9.91637 -9.90737 -9.78467 -9.46198 -9.14944 -8.94796 -8.38866 -6.03497 -4.06668 -0.23942 -0.00515 0.22607 2.16427 2.65220 2.99668 3.07369 3.24620 3.30305 3.36863 3.40044 3.48033 3.77200 4.06544 4.14508 4.43091 4.55446 4.60454 4.80395 4.98369 5.17034 5.28249 5.32492 5.32765 5.49648 5.62871 5.69805 5.97337 6.08589 6.29314 6.51292 6.53172 6.73020 6.94254 7.44732 7.60918 7.72511 7.94822 8.09738 8.35872 8.99968 9.57765 11.07799 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.013123 B = 0.002686 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.131267 B =10421.510790 C =12355.900300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.123 4.123 11 C 0.116 3.884 12 N -0.716 5.716 13 C 0.550 3.450 14 O -0.524 6.524 15 C -0.186 4.186 16 C 0.043 3.957 17 C -0.701 4.701 18 S 2.707 3.293 19 N -1.250 6.250 20 O -0.954 6.954 21 O -0.960 6.960 22 C 0.031 3.969 23 C -0.184 4.184 24 C 0.218 3.782 25 F -0.100 7.100 26 H 0.261 0.739 27 H 0.019 0.981 28 H 0.019 0.981 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.399 0.601 34 H 0.157 0.843 35 H 0.418 0.582 36 H 0.422 0.578 37 H 0.159 0.841 38 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.290 -25.228 -3.894 29.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.161 4.161 11 C -0.006 4.006 12 N -0.368 5.368 13 C 0.335 3.665 14 O -0.401 6.401 15 C -0.192 4.192 16 C 0.023 3.977 17 C -0.787 4.787 18 S 2.794 3.206 19 N -0.925 5.925 20 O -0.943 6.943 21 O -0.949 6.949 22 C 0.011 3.989 23 C -0.203 4.203 24 C 0.197 3.803 25 F -0.078 7.078 26 H 0.071 0.929 27 H 0.038 0.962 28 H 0.038 0.962 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.234 0.766 34 H 0.175 0.825 35 H 0.245 0.755 36 H 0.253 0.747 37 H 0.176 0.824 38 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 13.664 -25.144 -2.934 28.768 hybrid contribution -0.016 0.889 -0.697 1.130 sum 13.648 -24.255 -3.632 28.068 Atomic orbital electron populations 1.69966 1.06083 1.26731 1.50517 1.25034 0.94859 0.99347 0.95231 0.86569 0.79833 0.83354 0.78095 1.20660 1.21218 1.19826 1.21201 0.93036 0.90886 1.51011 0.92563 1.19023 0.93804 0.90798 0.97704 1.21927 0.99874 0.93122 1.01157 1.21765 0.91719 0.84696 1.02442 1.46154 1.11158 1.05552 1.73890 1.17850 0.87798 0.82838 0.78027 1.90868 1.15476 1.84527 1.49224 1.20354 0.94755 0.93438 1.10603 1.21077 0.90883 0.99296 0.86489 1.30645 1.25779 1.00123 1.22162 1.01522 0.72465 0.74196 0.72369 1.53032 1.20163 1.92817 1.26495 1.93652 1.84429 1.39820 1.76402 1.93617 1.73625 1.51124 1.76544 1.20997 0.95627 0.95094 0.87137 1.21322 0.92898 0.99573 1.06523 1.18031 0.78519 0.92453 0.91314 1.91668 1.30088 1.94541 1.91502 0.92908 0.96239 0.96222 0.92456 0.92535 0.91304 0.91292 0.76630 0.82540 0.75518 0.74705 0.82394 0.82679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.70 13.29 55.43 0.74 -25.96 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 7 C -0.52 -14.48 9.11 -34.44 -0.31 -14.79 16 8 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 9 C 0.02 0.61 4.97 -27.89 -0.14 0.47 16 10 C -0.12 -2.34 5.27 -26.73 -0.14 -2.48 16 11 C 0.12 1.98 5.67 -4.04 -0.02 1.96 16 12 N -0.72 -10.00 5.51 -61.29 -0.34 -10.34 16 13 C 0.55 8.14 7.77 -12.40 -0.10 8.04 16 14 O -0.52 -9.80 15.34 5.30 0.08 -9.72 16 15 C -0.19 -2.09 5.88 -104.92 -0.62 -2.71 16 16 C 0.04 0.36 9.01 -39.19 -0.35 0.01 16 17 C -0.70 -4.77 5.94 -39.64 -0.24 -5.00 16 18 S 2.71 17.86 6.28 -107.50 -0.67 17.18 16 19 N -1.25 -3.74 9.55 60.35 0.58 -3.16 16 20 O -0.95 -9.87 17.28 -57.17 -0.99 -10.86 16 21 O -0.96 -8.86 17.27 -57.17 -0.99 -9.85 16 22 C 0.03 0.18 9.51 -39.51 -0.38 -0.20 16 23 C -0.18 -1.25 10.01 -39.56 -0.40 -1.65 16 24 C 0.22 2.28 7.29 -38.96 -0.28 2.00 16 25 F -0.10 -1.29 15.55 2.25 0.04 -1.26 16 26 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 27 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.40 4.40 6.51 -40.82 -0.27 4.13 16 34 H 0.16 1.12 5.96 -52.49 -0.31 0.80 16 35 H 0.42 0.35 8.92 -34.48 -0.31 0.05 16 36 H 0.42 0.73 8.96 -34.47 -0.31 0.42 16 37 H 0.16 0.52 7.60 -52.48 -0.40 0.12 16 38 H 0.16 0.64 8.06 -52.48 -0.42 0.22 16 LS Contribution 347.71 15.07 5.24 5.24 Total: -1.00 -38.39 347.71 -8.50 -46.90 By element: Atomic # 1 Polarization: 2.39 SS G_CDS: -4.09 Total: -1.71 kcal Atomic # 6 Polarization: -9.78 SS G_CDS: -3.07 Total: -12.85 kcal Atomic # 7 Polarization: -40.44 SS G_CDS: 0.98 Total: -39.46 kcal Atomic # 8 Polarization: -28.53 SS G_CDS: -1.89 Total: -30.43 kcal Atomic # 9 Polarization: -1.29 SS G_CDS: 0.04 Total: -1.26 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: 17.86 SS G_CDS: -0.67 Total: 17.18 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -38.39 -8.50 -46.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733370744.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.120 kcal (2) G-P(sol) polarization free energy of solvation -38.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds