Wall clock time and date at job start Tue Mar 31 2020 06:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.39699 * 120.13987 * 51.01556 * 3 2 1 5 5 C 1.37679 * 120.03003 * 180.27707 * 4 3 2 6 6 C 1.39226 * 120.33904 * 359.76114 * 5 4 3 7 7 N 1.39575 * 119.86110 * 180.02562 * 6 5 4 8 8 C 1.34777 * 119.99807 * 213.57000 * 7 6 5 9 9 O 1.21275 * 120.00435 * 5.28114 * 8 7 6 10 10 C 1.50700 * 119.99975 * 185.27535 * 8 7 6 11 11 S 1.80994 * 109.47425 * 180.02562 * 10 8 7 12 12 C 1.76200 * 100.00261 * 179.97438 * 11 10 8 13 13 H 1.07998 * 119.99897 * 0.02562 * 12 11 10 14 14 C 1.38799 * 120.00323 * 179.97438 * 12 11 10 15 15 N 1.31638 * 119.99637 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00344 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.46853 * 0.02562 * 16 14 12 18 18 H 1.48496 * 109.47010 * 120.00031 * 16 14 12 19 19 H 1.48506 * 109.47026 * 240.00551 * 16 14 12 20 20 C 1.38816 * 120.28389 * 359.97438 * 6 5 4 21 21 C 1.38917 * 119.95379 * 0.02562 * 20 6 5 22 22 C 1.48295 * 120.15965 * 180.02562 * 21 20 6 23 23 N 1.34096 * 126.68662 * 359.95450 * 22 21 20 24 24 N 1.28981 * 107.26456 * 180.02562 * 23 22 21 25 25 N 1.28726 * 108.96386 * 0.02562 * 24 23 22 26 26 H 0.96991 * 125.33823 * 180.02562 * 25 24 23 27 27 N 1.28873 * 109.33163 * 359.97438 * 25 24 23 28 28 H 1.07993 * 119.98355 * 359.97438 * 4 3 2 29 29 H 1.08004 * 119.83187 * 179.74025 * 5 4 3 30 30 H 0.96998 * 119.99756 * 33.56766 * 7 6 5 31 31 H 1.09006 * 109.47525 * 300.00282 * 10 8 7 32 32 H 1.09007 * 109.46960 * 59.99783 * 10 8 7 33 33 H 0.96995 * 119.99778 * 180.02562 * 15 14 12 34 34 H 1.07999 * 120.02038 * 179.97438 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2699 -0.7591 -0.9391 5 6 4.6466 -0.7613 -0.9334 6 6 5.3473 -0.0049 0.0022 7 7 6.7430 -0.0140 -0.0015 8 6 7.4206 0.0934 1.1586 9 8 6.8209 0.1016 2.2127 10 6 8.9235 0.2033 1.1460 11 16 9.5334 0.3318 2.8453 12 6 11.2654 0.4433 2.5411 13 1 11.6382 0.4209 1.5278 14 6 12.1505 0.5610 3.6038 15 7 11.6959 0.5888 4.8389 16 14 13.9866 0.6800 3.2814 17 1 14.2367 0.6266 1.8186 18 1 14.5025 1.9621 3.8248 19 1 14.6800 -0.4535 3.9444 20 6 4.6637 0.7593 0.9380 21 6 3.2745 0.7703 0.9431 22 6 2.5396 1.5855 1.9404 23 7 3.0766 2.3587 2.8953 24 7 2.1012 2.8942 3.5477 25 7 0.9883 2.4893 3.0432 26 1 0.1057 2.7459 3.3528 27 7 1.2306 1.6904 2.0615 28 1 2.7322 -1.3488 -1.6667 29 1 5.1860 -1.3531 -1.6582 30 1 7.2252 -0.0978 -0.8389 31 1 9.3487 -0.6824 0.6738 32 1 9.2182 1.0906 0.5857 33 1 12.3144 0.6715 5.5815 34 1 5.2114 1.3441 1.6621 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000737697970.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:43 Heat of formation + Delta-G solvation = 152.881612 kcal Electronic energy + Delta-G solvation = -23480.903395 eV Core-core repulsion = 19736.800158 eV Total energy + Delta-G solvation = -3744.103238 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 330.064 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -44.65839 -40.68313 -38.88220 -36.54902 -35.07592 -34.45588 -33.61791 -32.47555 -31.21203 -30.83280 -28.79863 -25.57488 -25.18154 -24.88711 -23.65457 -22.14533 -20.63625 -19.55129 -19.08561 -18.15426 -17.63869 -17.34666 -16.66427 -15.80654 -15.29406 -15.04781 -14.84570 -14.44881 -14.28860 -14.24877 -14.05866 -13.77231 -13.45635 -13.07656 -12.83463 -12.65705 -12.50897 -12.41790 -12.18241 -11.77786 -11.57125 -11.31983 -11.25488 -11.10274 -11.07389 -10.81121 -10.38423 -9.88042 -9.70243 -9.12044 -9.11719 -8.37684 -8.31870 -6.57062 -6.26538 -3.98240 0.13398 0.73101 1.00034 1.98160 2.04727 2.58428 2.61432 2.73591 2.98600 3.19209 3.22003 3.28257 3.34524 3.49728 3.65516 3.72519 3.91497 4.14627 4.57844 4.65190 4.83815 4.93908 5.07128 5.09201 5.15738 5.27033 5.46494 5.58443 5.67544 5.72703 5.89708 5.97880 5.99735 6.10548 6.16809 6.61286 7.26649 7.39377 7.55442 7.94042 8.22021 8.30450 9.19127 10.80829 Molecular weight = 330.06amu Principal moments of inertia in cm(-1) A = 0.019230 B = 0.002594 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.719979 B =10791.827468 C =12083.000430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C 0.259 3.741 3 C -0.024 4.024 4 C -0.048 4.048 5 C -0.135 4.135 6 C 0.193 3.807 7 N -0.680 5.680 8 C 0.530 3.470 9 O -0.484 6.484 10 C -0.155 4.155 11 S -0.055 6.055 12 C -0.537 4.537 13 H 0.074 0.926 14 C 0.074 3.926 15 N -0.866 5.866 16 Si 0.919 3.081 17 H -0.271 1.271 18 H -0.280 1.280 19 H -0.280 1.280 20 C -0.085 4.085 21 C 0.051 3.949 22 C 0.208 3.792 23 N -0.246 5.246 24 N -0.044 5.044 25 N -0.226 5.226 26 H 0.475 0.525 27 N -0.288 5.288 28 H 0.144 0.856 29 H 0.144 0.856 30 H 0.416 0.584 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.269 0.731 34 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.513 -0.202 -13.312 21.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.082 5.082 2 C -0.057 4.057 3 C -0.030 4.030 4 C -0.069 4.069 5 C -0.157 4.157 6 C 0.095 3.905 7 N -0.326 5.326 8 C 0.318 3.682 9 O -0.355 6.355 10 C -0.305 4.305 11 S 0.172 5.828 12 C -0.685 4.685 13 H 0.093 0.907 14 C -0.136 4.136 15 N -0.501 5.501 16 Si 0.746 3.254 17 H -0.196 1.196 18 H -0.205 1.205 19 H -0.206 1.206 20 C -0.108 4.108 21 C 0.044 3.956 22 C -0.072 4.072 23 N -0.119 5.119 24 N -0.039 5.039 25 N -0.072 5.072 26 H 0.330 0.670 27 N -0.140 5.140 28 H 0.162 0.838 29 H 0.161 0.839 30 H 0.252 0.748 31 H 0.113 0.887 32 H 0.115 0.885 33 H 0.079 0.921 34 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -20.176 0.276 -10.784 22.879 hybrid contribution 2.039 -0.100 -1.844 2.751 sum -18.138 0.176 -12.628 22.101 Atomic orbital electron populations 1.81128 1.11859 1.07739 1.07511 1.25276 0.92351 0.94056 0.93978 1.15829 0.84754 1.02993 0.99465 1.20830 0.93352 0.96395 0.96359 1.20980 0.93770 0.99705 1.01202 1.17780 0.83805 0.93467 0.95413 1.43756 1.03674 1.73955 1.11218 1.20664 0.90094 0.74735 0.82732 1.90773 1.69779 1.44825 1.30091 1.23556 0.92076 1.05453 1.09435 1.85499 1.04708 1.95947 0.96655 1.22883 0.91202 1.58678 0.95727 0.90743 1.25001 0.99668 0.94475 0.94430 1.70022 1.35359 1.46433 0.98295 0.86107 0.82887 0.77964 0.78476 1.19591 1.20547 1.20562 1.21223 0.91577 0.98201 0.99802 1.16885 0.91526 0.95277 0.91874 1.23510 0.86343 0.99568 0.97753 1.76256 1.21540 1.09029 1.05117 1.78996 0.88240 1.17578 1.19108 1.47762 1.11624 1.28410 1.19383 0.67039 1.75028 1.17698 1.12754 1.08542 0.83821 0.83866 0.74770 0.88652 0.88488 0.92145 0.81942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -5.24 18.43 41.84 0.77 -4.47 16 2 C 0.26 2.93 12.97 -22.47 -0.29 2.64 16 3 C -0.02 -0.24 5.77 -106.48 -0.61 -0.85 16 4 C -0.05 -0.34 9.74 -39.24 -0.38 -0.72 16 5 C -0.14 -0.94 9.93 -39.42 -0.39 -1.33 16 6 C 0.19 1.99 6.27 -83.75 -0.53 1.46 16 7 N -0.68 -7.15 5.32 -9.88 -0.05 -7.20 16 8 C 0.53 8.39 7.57 -10.99 -0.08 8.31 16 9 O -0.48 -9.62 13.54 5.56 0.08 -9.54 16 10 C -0.15 -2.72 6.16 36.01 0.22 -2.49 16 11 S -0.05 -1.38 20.57 -107.50 -2.21 -3.60 16 12 C -0.54 -14.53 9.50 30.94 0.29 -14.24 16 13 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 14 C 0.07 2.03 5.49 -17.43 -0.10 1.94 16 15 N -0.87 -25.38 13.22 55.49 0.73 -24.65 16 16 Si 0.92 20.71 29.55 -169.99 -5.02 15.68 16 17 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 18 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 19 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 20 C -0.09 -1.08 8.28 -39.12 -0.32 -1.40 16 21 C 0.05 0.61 5.90 -104.56 -0.62 -0.01 16 22 C 0.21 2.76 7.82 -156.27 -1.22 1.54 16 23 N -0.25 -3.61 12.23 32.14 0.39 -3.22 16 24 N -0.04 -0.54 13.47 60.35 0.81 0.27 16 25 N -0.23 -2.12 7.90 60.35 0.48 -1.65 16 26 H 0.48 2.14 8.96 -340.37 -3.05 -0.91 16 27 N -0.29 -3.42 10.14 32.15 0.33 -3.10 16 28 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 29 H 0.14 0.56 8.06 -52.48 -0.42 0.13 16 30 H 0.42 2.75 8.82 -40.82 -0.36 2.39 16 31 H 0.10 1.50 8.14 -51.91 -0.42 1.07 16 32 H 0.10 1.54 8.14 -51.91 -0.42 1.12 16 33 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 34 H 0.16 2.50 6.23 -52.49 -0.33 2.18 16 LS Contribution 333.62 15.07 5.03 5.03 Total: -1.00 -36.46 333.62 -7.68 -44.13 By element: Atomic # 1 Polarization: 2.44 SS G_CDS: -4.97 Total: -2.53 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: -4.03 Total: -5.16 kcal Atomic # 7 Polarization: -47.47 SS G_CDS: 3.46 Total: -44.01 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: 0.08 Total: -9.54 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 16 Polarization: -1.38 SS G_CDS: -2.21 Total: -3.60 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -36.46 -7.68 -44.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737697970.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.016 kcal (2) G-P(sol) polarization free energy of solvation -36.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 160.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 152.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds