Wall clock time and date at job start Tue Mar 31 2020 05:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 120.00168 * 2 1 4 4 H 1.48500 * 109.46902 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47047 * 299.99962 * 3 2 1 6 6 H 1.48497 * 109.46874 * 59.99897 * 3 2 1 7 7 C 1.38811 * 119.99969 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00603 * 156.19751 * 7 2 1 9 9 N 1.36945 * 119.99935 * 336.19515 * 7 2 1 10 10 C 1.46498 * 119.99896 * 326.60227 * 9 7 2 11 11 C 1.50701 * 109.46776 * 276.17705 * 10 9 7 12 12 O 1.20827 * 120.00122 * 0.02562 * 11 10 9 13 13 O 1.34233 * 119.99848 * 180.02562 * 11 10 9 14 14 S 1.65600 * 119.99750 * 146.59536 * 9 7 2 15 15 O 1.42099 * 106.40424 * 336.46521 * 14 9 7 16 16 O 1.42096 * 106.40036 * 203.54114 * 14 9 7 17 17 C 1.76205 * 107.21652 * 90.00358 * 14 9 7 18 18 C 1.38232 * 120.00014 * 89.99535 * 17 14 9 19 19 C 1.38232 * 120.00230 * 179.97438 * 18 17 14 20 20 C 1.38236 * 120.00094 * 0.02562 * 19 18 17 21 21 N 1.48013 * 120.00651 * 179.97438 * 20 19 18 22 22 O 1.21803 * 119.99712 * 0.02562 * 21 20 19 23 23 O 1.21793 * 120.00497 * 180.02562 * 21 20 19 24 24 C 1.38242 * 119.99407 * 0.25711 * 20 19 18 25 25 C 1.38232 * 120.00308 * 359.48971 * 24 20 19 26 26 H 0.97000 * 119.99877 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.47137 * 36.18137 * 10 9 7 28 28 H 1.09000 * 109.46941 * 156.18450 * 10 9 7 29 29 H 0.96702 * 116.99715 * 180.02562 * 13 11 10 30 30 H 1.08006 * 120.00195 * 0.02562 * 18 17 14 31 31 H 1.07997 * 120.00444 * 179.97438 * 19 18 17 32 32 H 1.08006 * 119.99448 * 179.72409 * 24 20 19 33 33 H 1.07994 * 120.00243 * 180.26050 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0213 -1.2419 -0.3780 9 7 1.4129 -2.3379 0.4776 10 6 0.4592 -2.2526 1.5864 11 6 1.2088 -2.2396 2.8937 12 8 2.4158 -2.2953 2.8987 13 8 0.5355 -2.1661 4.0527 14 16 1.7685 -3.8075 -0.1976 15 8 2.2317 -3.5425 -1.5146 16 8 0.6629 -4.6554 0.0815 17 6 3.1399 -4.4704 0.6882 18 6 2.9264 -5.2634 1.8001 19 6 4.0022 -5.7839 2.4948 20 6 5.2916 -5.5109 2.0778 21 7 6.4436 -6.0677 2.8219 22 8 6.2555 -6.7668 3.8014 23 8 7.5797 -5.8269 2.4547 24 6 5.5051 -4.7131 0.9692 25 6 4.4292 -4.1969 0.2715 26 1 -0.4850 0.8401 0.0004 27 1 -0.1252 -1.3373 1.4935 28 1 -0.2080 -3.1141 1.5588 29 1 1.0597 -2.1603 4.8653 30 1 1.9190 -5.4770 2.1258 31 1 3.8355 -6.4031 3.3638 32 1 6.5126 -4.4962 0.6461 33 1 4.5960 -3.5771 -0.5970 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739084971.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:04 Heat of formation + Delta-G solvation = -119.159586 kcal Electronic energy + Delta-G solvation = -26802.844351 eV Core-core repulsion = 22539.217006 eV Total energy + Delta-G solvation = -4263.627346 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 330.049 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.26753 -39.62360 -39.31139 -36.67312 -36.61192 -36.14270 -35.22573 -35.12422 -32.23223 -31.71855 -31.49288 -27.90469 -26.81004 -24.47818 -23.29767 -22.73905 -21.23411 -19.45735 -19.09302 -18.75981 -18.21884 -17.63066 -17.59641 -16.96653 -16.89428 -15.73221 -15.69024 -15.13446 -15.04687 -14.84542 -14.48971 -13.95881 -13.74090 -13.55473 -13.39665 -12.73376 -12.16030 -11.81398 -11.74113 -11.64707 -11.55616 -11.42119 -11.34052 -11.23025 -11.20888 -11.11445 -11.03281 -10.81859 -10.69392 -10.45949 -10.06733 -9.97053 -9.44373 -9.43164 -8.17463 -6.59907 -4.29015 -0.41349 0.89715 0.90866 1.16194 1.30581 2.81536 3.00786 3.04879 3.15280 3.20333 3.40036 3.92919 4.15258 4.20293 4.30953 4.37251 4.60457 4.76862 4.93417 5.09290 5.24928 5.40999 5.55007 5.57629 5.76393 5.80662 5.88633 6.11688 6.39222 6.42592 6.84290 6.98284 7.33359 7.55224 8.02924 8.47165 8.60252 9.00903 10.43826 Molecular weight = 330.05amu Principal moments of inertia in cm(-1) A = 0.014286 B = 0.004771 C = 0.004752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.461993 B = 5867.926448 C = 5890.380648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.040 3.960 3 Si 0.921 3.079 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.288 4.288 8 H 0.099 0.901 9 N -0.819 5.819 10 C 0.120 3.880 11 C 0.450 3.550 12 O -0.509 6.509 13 O -0.526 6.526 14 S 2.638 3.362 15 O -0.948 6.948 16 O -0.982 6.982 17 C -0.603 4.603 18 C -0.019 4.019 19 C -0.077 4.077 20 C -0.007 4.007 21 N 0.027 4.973 22 O -0.160 6.160 23 O -0.157 6.157 24 C -0.076 4.076 25 C -0.012 4.012 26 H 0.274 0.726 27 H 0.160 0.840 28 H 0.109 0.891 29 H 0.395 0.605 30 H 0.155 0.845 31 H 0.156 0.844 32 H 0.158 0.842 33 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.874 -5.343 4.931 7.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.168 4.168 3 Si 0.746 3.254 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.205 1.205 7 C -0.422 4.422 8 H 0.116 0.884 9 N -0.650 5.650 10 C -0.010 4.010 11 C 0.290 3.710 12 O -0.396 6.396 13 O -0.337 6.337 14 S 2.732 3.268 15 O -0.938 6.938 16 O -0.972 6.972 17 C -0.684 4.684 18 C -0.038 4.038 19 C -0.096 4.096 20 C -0.089 4.089 21 N 0.547 4.453 22 O -0.376 6.376 23 O -0.374 6.374 24 C -0.096 4.096 25 C -0.032 4.032 26 H 0.084 0.916 27 H 0.176 0.824 28 H 0.127 0.873 29 H 0.252 0.748 30 H 0.173 0.827 31 H 0.173 0.827 32 H 0.176 0.824 33 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 1.915 -5.531 3.489 6.814 hybrid contribution 1.673 0.708 1.483 2.345 sum 3.588 -4.823 4.972 7.801 Atomic orbital electron populations 1.69854 1.06029 1.28119 1.45649 1.25360 0.95283 0.99919 0.96208 0.85966 0.80192 0.81128 0.78069 1.18988 1.20349 1.20470 1.19166 0.97064 0.84501 1.41513 0.88381 1.52332 1.54353 1.19185 1.39095 1.21097 0.91718 1.09372 0.78833 1.25311 0.87856 0.71479 0.86327 1.90647 1.15890 1.45446 1.87603 1.84624 1.45781 1.86113 1.17137 1.04806 0.73547 0.74221 0.74246 1.93505 1.81992 1.84337 1.33966 1.93469 1.49174 1.68863 1.85698 1.32105 1.18381 1.07872 1.10016 1.20880 0.99574 0.92000 0.91394 1.21055 0.89563 0.98816 1.00215 1.21314 0.86151 1.03994 0.97472 1.43697 1.02461 0.98918 1.00251 1.94525 1.92042 1.34645 1.16384 1.94529 1.08001 1.63328 1.71562 1.21145 1.01991 0.94181 0.92301 1.21002 0.89597 0.94573 0.98021 0.91599 0.82377 0.87317 0.74751 0.82732 0.82674 0.82450 0.81914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -20.39 11.26 55.49 0.62 -19.77 16 2 C 0.04 0.93 4.99 -17.43 -0.09 0.84 16 3 Si 0.92 18.70 29.62 -169.99 -5.03 13.66 16 4 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 5 H -0.28 -5.63 7.11 56.52 0.40 -5.22 16 6 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 7 C -0.29 -6.71 8.71 -15.06 -0.13 -6.84 16 8 H 0.10 2.23 7.93 -52.49 -0.42 1.81 16 9 N -0.82 -17.61 2.39 -61.09 -0.15 -17.76 16 10 C 0.12 2.34 5.89 -5.19 -0.03 2.31 16 11 C 0.45 8.10 8.36 36.01 0.30 8.40 16 12 O -0.51 -10.10 16.81 -18.75 -0.32 -10.41 16 13 O -0.53 -7.58 13.42 -39.26 -0.53 -8.11 16 14 S 2.64 52.76 5.65 -107.50 -0.61 52.16 16 15 O -0.95 -21.11 16.50 -57.17 -0.94 -22.05 16 16 O -0.98 -20.14 15.83 -57.17 -0.90 -21.04 16 17 C -0.60 -10.20 5.79 -39.58 -0.23 -10.43 16 18 C -0.02 -0.28 9.45 -39.59 -0.37 -0.66 16 19 C -0.08 -1.07 9.56 -39.58 -0.38 -1.44 16 20 C -0.01 -0.10 6.85 -79.95 -0.55 -0.65 16 21 N 0.03 0.41 4.45 33.96 0.15 0.56 16 22 O -0.16 -2.48 18.45 -29.46 -0.54 -3.02 16 23 O -0.16 -2.46 18.45 -29.46 -0.54 -3.00 16 24 C -0.08 -1.08 9.56 -39.58 -0.38 -1.46 16 25 C -0.01 -0.19 9.52 -39.58 -0.38 -0.57 16 26 H 0.27 6.11 8.31 -40.82 -0.34 5.77 16 27 H 0.16 3.36 5.31 -51.93 -0.28 3.08 16 28 H 0.11 1.92 6.89 -51.93 -0.36 1.56 16 29 H 0.40 3.92 9.10 45.56 0.41 4.33 16 30 H 0.16 2.05 7.62 -52.48 -0.40 1.65 16 31 H 0.16 1.77 7.61 -52.49 -0.40 1.37 16 32 H 0.16 1.84 7.61 -52.48 -0.40 1.44 16 33 H 0.16 2.32 7.62 -52.49 -0.40 1.92 16 LS Contribution 320.83 15.07 4.83 4.83 Total: -1.00 -29.39 320.83 -7.56 -36.94 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -1.37 Total: 7.50 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: -2.23 Total: -10.50 kcal Atomic # 7 Polarization: -37.59 SS G_CDS: 0.63 Total: -36.96 kcal Atomic # 8 Polarization: -63.86 SS G_CDS: -3.78 Total: -67.64 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.03 Total: 13.66 kcal Atomic # 16 Polarization: 52.76 SS G_CDS: -0.61 Total: 52.16 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.39 -7.56 -36.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739084971.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.217 kcal (2) G-P(sol) polarization free energy of solvation -29.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds