Wall clock time and date at job start Tue Mar 31 2020 06:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46504 * 109.46899 * 2 1 4 4 C 1.46503 * 119.99852 * 86.14063 * 3 2 1 5 5 C 1.50699 * 109.47156 * 82.71885 * 4 3 2 6 6 H 1.08006 * 119.99794 * 359.97438 * 5 4 3 7 7 C 1.37869 * 120.00398 * 179.97438 * 5 4 3 8 8 N 1.31523 * 119.99807 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00355 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47178 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47132 * 120.00307 * 9 7 5 12 12 H 1.48501 * 109.47130 * 240.00188 * 9 7 5 13 13 C 1.34777 * 119.99944 * 266.14365 * 3 2 1 14 14 O 1.21569 * 120.00024 * 4.27266 * 13 3 2 15 15 C 1.47728 * 119.99951 * 184.27980 * 13 3 2 16 16 C 1.39671 * 120.11860 * 48.07176 * 15 13 3 17 17 C 1.37819 * 119.87937 * 180.02562 * 16 15 13 18 18 C 1.38678 * 120.11906 * 359.97277 * 17 16 15 19 19 F 1.35098 * 119.88035 * 180.02562 * 18 17 16 20 20 C 1.38632 * 120.23414 * 0.05208 * 18 17 16 21 21 S 1.76205 * 119.93365 * 179.97438 * 20 18 17 22 22 N 1.65598 * 107.22004 * 294.99575 * 21 20 18 23 23 O 1.42096 * 106.40368 * 48.54143 * 21 20 18 24 24 O 1.42104 * 106.40138 * 181.45869 * 21 20 18 25 25 C 1.37851 * 120.12300 * 359.67201 * 20 18 17 26 26 H 1.08999 * 109.47368 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47750 * 299.99851 * 1 2 3 28 28 H 1.09005 * 109.47329 * 60.00373 * 1 2 3 29 29 H 1.08996 * 109.47160 * 240.00626 * 2 1 3 30 30 H 1.08996 * 109.47343 * 119.99861 * 2 1 3 31 31 H 1.09005 * 109.46759 * 202.71350 * 4 3 2 32 32 H 1.08997 * 109.47250 * 322.71765 * 4 3 2 33 33 H 0.97000 * 119.99702 * 179.97438 * 8 7 5 34 34 H 1.07998 * 120.06154 * 0.02760 * 16 15 13 35 35 H 1.08001 * 119.93844 * 180.02562 * 17 16 15 36 36 H 0.97005 * 119.99631 * 0.02562 * 22 21 20 37 37 H 0.97000 * 120.00551 * 180.02562 * 22 21 20 38 38 H 1.08012 * 120.06281 * 180.32110 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1819 2.1003 1.2659 5 6 3.5060 1.7332 1.8846 6 1 4.1601 1.0338 1.3851 7 6 3.8826 2.2901 3.0884 8 7 3.0863 3.1421 3.6964 9 14 5.5236 1.8344 3.8557 10 1 6.2274 0.8640 2.9793 11 1 6.3546 3.0557 4.0087 12 1 5.2937 1.2219 5.1888 13 6 2.3169 1.9905 -1.1646 14 8 2.1080 1.4223 -2.2188 15 6 2.8981 3.3486 -1.1599 16 6 3.9767 3.6464 -0.3240 17 6 4.5148 4.9152 -0.3232 18 6 3.9877 5.8952 -1.1509 19 9 4.5192 7.1372 -1.1467 20 6 2.9168 5.6049 -1.9822 21 16 2.2528 6.8563 -3.0301 22 7 1.6084 8.0253 -2.0501 23 8 3.3589 7.4531 -3.6929 24 8 1.1607 6.2641 -3.7198 25 6 2.3746 4.3376 -1.9950 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.1529 3.1741 1.0802 32 1 1.3749 1.8272 1.9458 33 1 3.3510 3.5336 4.5435 34 1 4.3883 2.8839 0.3206 35 1 5.3491 5.1465 0.3225 36 1 1.6501 7.9270 -1.0860 37 1 1.1892 8.8083 -2.4401 38 1 1.5437 4.1112 -2.6468 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000749306203.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:21 Heat of formation + Delta-G solvation = -127.850072 kcal Electronic energy + Delta-G solvation = -26786.849383 eV Core-core repulsion = 22671.051073 eV Total energy + Delta-G solvation = -4115.798309 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.088 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.22495 -39.96863 -37.96236 -37.10554 -35.85142 -35.46949 -33.29137 -33.06262 -31.68202 -31.16733 -29.74805 -27.36265 -24.16952 -23.54275 -23.31095 -22.14154 -19.97055 -19.18287 -18.04324 -17.62846 -17.38249 -16.93204 -16.66112 -16.38885 -15.80964 -15.74234 -15.39459 -15.19246 -14.66883 -14.32735 -14.11013 -13.81767 -13.41681 -13.07918 -12.67942 -12.60216 -12.42131 -12.19684 -12.15077 -12.07797 -11.97353 -11.85757 -11.68875 -11.51323 -11.11516 -10.99514 -10.75239 -10.58203 -10.55322 -10.32144 -9.95983 -9.47339 -9.33593 -8.85593 -8.68634 -7.94058 -6.43040 -4.52348 0.31234 0.68808 1.06740 2.89362 3.04695 3.09095 3.16043 3.18476 3.41100 3.64979 3.78823 3.93105 4.11370 4.48700 4.82782 4.88760 4.99427 5.23617 5.34458 5.51046 5.62737 5.71544 5.75860 5.81618 5.87796 5.89415 6.17881 6.28721 6.33916 6.46694 6.55686 6.58769 6.79905 6.90453 6.99289 7.31645 7.50028 7.78332 8.09774 8.52246 8.73248 9.15310 10.62376 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.012410 B = 0.004845 C = 0.003825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2255.623386 B = 5778.231702 C = 7318.654157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.115 3.885 3 N -0.586 5.586 4 C 0.229 3.771 5 C -0.550 4.550 6 H 0.067 0.933 7 C 0.071 3.929 8 N -0.879 5.879 9 Si 0.892 3.108 10 H -0.269 1.269 11 H -0.280 1.280 12 H -0.280 1.280 13 C 0.557 3.443 14 O -0.560 6.560 15 C -0.147 4.147 16 C 0.022 3.978 17 C -0.175 4.175 18 C 0.200 3.800 19 F -0.123 7.123 20 C -0.728 4.728 21 S 2.709 3.291 22 N -1.248 6.248 23 O -0.958 6.958 24 O -0.960 6.960 25 C 0.047 3.953 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.042 0.958 32 H 0.039 0.961 33 H 0.268 0.732 34 H 0.184 0.816 35 H 0.149 0.851 36 H 0.418 0.582 37 H 0.420 0.580 38 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.882 5.797 -4.677 7.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.008 4.008 3 N -0.315 5.315 4 C 0.109 3.891 5 C -0.588 4.588 6 H 0.085 0.915 7 C -0.135 4.135 8 N -0.515 5.515 9 Si 0.719 3.281 10 H -0.194 1.194 11 H -0.206 1.206 12 H -0.206 1.206 13 C 0.344 3.656 14 O -0.441 6.441 15 C -0.151 4.151 16 C 0.004 3.996 17 C -0.194 4.194 18 C 0.179 3.821 19 F -0.101 7.101 20 C -0.816 4.816 21 S 2.796 3.204 22 N -0.923 5.923 23 O -0.947 6.947 24 O -0.950 6.950 25 C 0.027 3.973 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.092 0.908 30 H 0.099 0.901 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.078 0.922 34 H 0.201 0.799 35 H 0.167 0.833 36 H 0.245 0.755 37 H 0.250 0.750 38 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -1.913 5.503 -6.064 8.409 hybrid contribution 0.993 0.080 1.819 2.074 sum -0.920 5.583 -4.245 7.073 Atomic orbital electron populations 1.22103 0.96608 1.01437 1.02096 1.21296 0.93695 0.83016 1.02774 1.48198 1.61932 1.13809 1.07608 1.19600 0.97607 0.92616 0.79269 1.21500 1.03382 1.27745 1.06170 0.91473 1.24969 0.97538 0.94512 0.96449 1.69930 1.36472 1.28304 1.16843 0.86525 0.83239 0.78740 0.79637 1.19372 1.20554 1.20568 1.18073 0.78285 0.85197 0.84059 1.90728 1.55638 1.66465 1.31245 1.20115 0.99837 0.95243 0.99895 1.22662 0.90203 0.97031 0.89740 1.21266 1.03594 0.93103 1.01439 1.17301 0.90661 0.80062 0.94078 1.91592 1.84864 1.38719 1.94967 1.30251 1.12550 1.15834 1.22927 1.01364 0.73879 0.72784 0.72358 1.52983 1.79014 1.39326 1.21013 1.93620 1.53768 1.76030 1.71266 1.93602 1.53720 1.77304 1.70349 1.20786 0.95393 0.88757 0.92342 0.92244 0.92443 0.92730 0.90787 0.90083 0.94020 0.94268 0.92206 0.79917 0.83316 0.75470 0.75011 0.82634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.46 10.24 37.16 0.38 -2.08 16 2 C 0.12 1.97 6.15 -4.04 -0.02 1.95 16 3 N -0.59 -11.42 2.46 -176.22 -0.43 -11.86 16 4 C 0.23 4.88 4.67 -5.19 -0.02 4.85 16 5 C -0.55 -12.37 6.53 -34.44 -0.23 -12.59 16 6 H 0.07 1.53 7.77 -52.48 -0.41 1.12 16 7 C 0.07 1.64 5.46 -17.82 -0.10 1.54 16 8 N -0.88 -21.67 13.29 55.43 0.74 -20.93 16 9 Si 0.89 18.27 29.54 -169.99 -5.02 13.25 16 10 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 11 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 12 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 13 C 0.56 11.15 7.21 -12.38 -0.09 11.06 16 14 O -0.56 -12.25 16.58 5.31 0.09 -12.16 16 15 C -0.15 -2.69 4.73 -104.97 -0.50 -3.19 16 16 C 0.02 0.38 7.71 -39.20 -0.30 0.08 16 17 C -0.17 -2.74 10.01 -39.57 -0.40 -3.13 16 18 C 0.20 3.03 7.22 -39.27 -0.28 2.74 16 19 F -0.12 -1.77 16.26 2.25 0.04 -1.73 16 20 C -0.73 -10.96 5.88 -39.58 -0.23 -11.19 16 21 S 2.71 36.41 5.92 -107.50 -0.64 35.77 16 22 N -1.25 -11.45 9.55 60.35 0.58 -10.88 16 23 O -0.96 -15.47 17.42 -57.17 -1.00 -16.47 16 24 O -0.96 -15.16 16.96 -57.17 -0.97 -16.13 16 25 C 0.05 0.79 9.21 -39.21 -0.36 0.43 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.07 1.27 7.37 -51.93 -0.38 0.89 16 30 H 0.08 1.35 8.10 -51.93 -0.42 0.93 16 31 H 0.04 0.92 5.95 -51.93 -0.31 0.61 16 32 H 0.04 0.89 8.12 -51.93 -0.42 0.47 16 33 H 0.27 6.32 8.31 -40.82 -0.34 5.98 16 34 H 0.18 3.45 4.92 -52.49 -0.26 3.20 16 35 H 0.15 2.03 8.06 -52.49 -0.42 1.61 16 36 H 0.42 3.19 8.92 -34.47 -0.31 2.89 16 37 H 0.42 2.81 8.96 -34.47 -0.31 2.50 16 38 H 0.16 2.50 7.33 -52.48 -0.38 2.11 16 LS Contribution 342.55 15.07 5.16 5.16 Total: -1.00 -30.21 342.55 -7.64 -37.85 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -4.03 Total: 7.66 kcal Atomic # 6 Polarization: -7.38 SS G_CDS: -2.15 Total: -9.53 kcal Atomic # 7 Polarization: -44.54 SS G_CDS: 0.88 Total: -43.66 kcal Atomic # 8 Polarization: -42.88 SS G_CDS: -1.88 Total: -44.76 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.04 Total: -1.73 kcal Atomic # 14 Polarization: 18.27 SS G_CDS: -5.02 Total: 13.25 kcal Atomic # 16 Polarization: 36.41 SS G_CDS: -0.64 Total: 35.77 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.21 -7.64 -37.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749306203.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.003 kcal (2) G-P(sol) polarization free energy of solvation -30.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds