Wall clock time and date at job start Tue Mar 31 2020 06:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47273 * 2 1 4 4 N 1.46499 * 109.47213 * 120.00292 * 2 1 3 5 5 S 1.65597 * 119.99926 * 95.27634 * 4 2 1 6 6 O 1.42096 * 106.40195 * 178.26439 * 5 4 2 7 7 O 1.42108 * 106.40105 * 311.18495 * 5 4 2 8 8 C 1.76199 * 107.22117 * 64.72196 * 5 4 2 9 9 C 1.38481 * 119.88936 * 269.72840 * 8 5 4 10 10 C 1.38224 * 120.34642 * 179.76334 * 9 8 5 11 11 C 1.38292 * 120.12756 * 0.50724 * 10 9 8 12 12 F 1.35099 * 120.11184 * 179.72011 * 11 10 9 13 13 C 1.39889 * 119.77297 * 359.74968 * 11 10 9 14 14 C 1.47582 * 120.17033 * 179.97438 * 13 11 10 15 15 O 1.21599 * 120.00317 * 0.02562 * 14 13 11 16 16 N 1.34778 * 119.99736 * 180.02562 * 14 13 11 17 17 C 1.36894 * 119.99712 * 179.97438 * 16 14 13 18 18 H 1.07999 * 120.00359 * 0.02562 * 17 16 14 19 19 C 1.39038 * 119.99931 * 179.97438 * 17 16 14 20 20 N 1.31375 * 119.99896 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00143 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47203 * 60.00295 * 21 19 17 23 23 H 1.48500 * 109.47285 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47252 * 300.00382 * 21 19 17 25 25 C 1.37834 * 119.88834 * 89.99857 * 8 5 4 26 26 H 1.09006 * 109.46787 * 299.99904 * 1 2 3 27 27 H 1.09005 * 109.47504 * 59.99558 * 1 2 3 28 28 H 1.08996 * 109.47409 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.47077 * 240.00810 * 2 1 3 30 30 H 1.08993 * 109.47426 * 180.02562 * 3 2 1 31 31 H 1.09005 * 109.47216 * 300.00618 * 3 2 1 32 32 H 1.09006 * 109.47135 * 60.00309 * 3 2 1 33 33 H 0.97001 * 119.99790 * 274.99423 * 4 2 1 34 34 H 1.08001 * 119.82311 * 359.97438 * 9 8 5 35 35 H 1.08005 * 119.93148 * 180.23671 * 10 9 8 36 36 H 0.96996 * 120.00218 * 359.97438 * 16 14 13 37 37 H 0.96997 * 120.00176 * 180.02562 * 20 19 17 38 38 H 1.08007 * 120.06835 * 359.96136 * 25 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 16 2.4187 -2.2957 1.1200 6 8 2.8887 -2.6537 2.4123 7 8 1.3322 -2.9503 0.4791 8 6 3.7972 -2.4385 0.0319 9 6 3.5895 -2.6424 -1.3220 10 6 4.6639 -2.7509 -2.1848 11 6 5.9558 -2.6666 -1.6986 12 9 7.0058 -2.7783 -2.5413 13 6 6.1717 -2.4660 -0.3311 14 6 7.5467 -2.3753 0.1973 15 8 8.4956 -2.4746 -0.5566 16 7 7.7506 -2.1824 1.5155 17 6 9.0260 -2.0989 2.0057 18 1 9.8688 -2.1870 1.3361 19 6 9.2365 -1.8994 3.3655 20 7 8.2113 -1.7916 4.1800 21 14 10.9768 -1.7860 4.0345 22 1 11.6811 -0.6475 3.3918 23 1 10.9296 -1.5737 5.5035 24 1 11.7034 -3.0472 3.7403 25 6 5.0787 -2.3523 0.5320 26 1 -0.3633 0.5139 0.8901 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5137 -0.8901 30 1 3.1299 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6767 1.9564 0.8901 33 1 2.1110 -0.2067 2.0317 34 1 2.5826 -2.7137 -1.7062 35 1 4.4941 -2.9061 -3.2400 36 1 6.9937 -2.1029 2.1169 37 1 8.3581 -1.6520 5.1286 38 1 5.2379 -2.1969 1.5889 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000749609017.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:48 Heat of formation + Delta-G solvation = -135.214427 kcal Electronic energy + Delta-G solvation = -26314.584669 eV Core-core repulsion = 22198.467017 eV Total energy + Delta-G solvation = -4116.117652 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.088 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.62398 -39.32758 -37.64217 -37.39119 -36.83826 -35.85231 -34.21251 -31.91151 -30.82471 -30.76128 -30.72162 -27.40837 -25.54305 -23.61978 -22.97353 -21.71061 -20.41763 -19.44966 -18.54600 -17.77079 -17.48751 -17.02469 -16.60964 -16.08206 -15.72099 -15.41905 -14.81196 -14.77926 -14.51492 -14.26645 -14.00736 -13.70821 -13.54608 -13.40895 -13.09009 -12.99888 -12.66944 -12.47167 -12.37349 -12.10806 -12.03140 -11.75677 -11.74720 -11.67359 -11.44521 -11.21178 -11.16484 -10.96936 -10.56825 -10.40318 -9.80634 -9.75264 -9.15704 -8.90557 -8.63567 -8.21827 -6.68237 -3.99630 0.32326 0.68268 1.01245 2.79620 3.06067 3.15479 3.19362 3.22341 3.70242 3.96669 4.17352 4.23129 4.28969 4.48690 4.61480 4.68117 4.80421 4.86157 4.92953 5.11691 5.14273 5.28742 5.36335 5.55272 5.56804 5.58709 5.63631 5.77548 5.83853 5.93911 6.00514 6.05070 6.10107 6.28691 6.78040 6.81057 7.31006 7.79944 8.34595 8.91948 9.24069 9.80664 10.47383 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.012899 B = 0.004078 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2170.180489 B = 6864.807902 C = 8035.513652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.145 3.855 3 C -0.161 4.161 4 N -1.113 6.113 5 S 2.697 3.303 6 O -0.951 6.951 7 O -0.958 6.958 8 C -0.695 4.695 9 C -0.003 4.003 10 C -0.181 4.181 11 C 0.193 3.807 12 F -0.108 7.108 13 C -0.147 4.147 14 C 0.455 3.545 15 O -0.586 6.586 16 N -0.534 5.534 17 C -0.294 4.294 18 H 0.111 0.889 19 C 0.026 3.974 20 N -0.879 5.879 21 Si 0.939 3.061 22 H -0.270 1.270 23 H -0.281 1.281 24 H -0.270 1.270 25 C 0.020 3.980 26 H 0.061 0.939 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.420 0.580 34 H 0.147 0.853 35 H 0.145 0.855 36 H 0.394 0.606 37 H 0.280 0.720 38 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.325 5.084 -6.887 18.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.039 3.961 3 C -0.220 4.220 4 N -0.873 5.873 5 S 2.786 3.214 6 O -0.941 6.941 7 O -0.948 6.948 8 C -0.782 4.782 9 C -0.023 4.023 10 C -0.201 4.201 11 C 0.171 3.829 12 F -0.085 7.085 13 C -0.153 4.153 14 C 0.244 3.756 15 O -0.472 6.472 16 N -0.168 5.168 17 C -0.423 4.423 18 H 0.129 0.871 19 C -0.180 4.180 20 N -0.517 5.517 21 Si 0.765 3.235 22 H -0.195 1.195 23 H -0.206 1.206 24 H -0.195 1.195 25 C -0.001 4.001 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.102 0.898 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.255 0.745 34 H 0.164 0.836 35 H 0.163 0.837 36 H 0.229 0.771 37 H 0.090 0.910 38 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -16.048 4.276 -6.886 17.979 hybrid contribution 1.184 0.538 0.463 1.381 sum -14.864 4.813 -6.422 16.892 Atomic orbital electron populations 1.22347 0.94869 1.03544 1.02423 1.20760 0.94542 0.94385 0.86454 1.22121 1.02275 0.94828 1.02796 1.55703 1.81598 1.30957 1.19009 1.01838 0.73640 0.72400 0.73496 1.93644 1.81781 1.81103 1.37569 1.93573 1.51203 1.72478 1.77509 1.30760 1.16077 1.20842 1.10536 1.20707 0.99392 0.91605 0.90624 1.21143 0.90587 1.06898 1.01464 1.17947 0.84009 0.94039 0.86930 1.91603 1.55892 1.91592 1.69443 1.20641 0.96364 1.05648 0.92634 1.17329 0.86763 0.87916 0.83642 1.90676 1.41993 1.57622 1.56953 1.41930 1.09495 1.59382 1.05955 1.19865 0.84624 1.45494 0.92331 0.87140 1.25467 1.00309 0.96408 0.95767 1.69589 1.31012 1.45758 1.05357 0.85778 0.80816 0.79408 0.77524 1.19509 1.20586 1.19480 1.21034 0.89675 0.89237 1.00134 0.92023 0.91505 0.91015 0.89809 0.91520 0.91197 0.91795 0.74517 0.83561 0.83720 0.77063 0.90964 0.83131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.25 9.52 37.16 0.35 -0.90 16 2 C 0.15 1.16 3.39 -67.93 -0.23 0.93 16 3 C -0.16 -1.11 9.44 37.16 0.35 -0.76 16 4 N -1.11 -10.50 5.47 -4.89 -0.03 -10.53 16 5 S 2.70 34.72 5.65 -107.50 -0.61 34.11 16 6 O -0.95 -15.64 17.27 -57.17 -0.99 -16.63 16 7 O -0.96 -13.41 16.56 -57.17 -0.95 -14.35 16 8 C -0.70 -9.77 5.80 -39.64 -0.23 -10.00 16 9 C 0.00 -0.04 8.89 -39.50 -0.35 -0.39 16 10 C -0.18 -2.42 10.01 -39.57 -0.40 -2.81 16 11 C 0.19 3.45 7.29 -38.94 -0.28 3.17 16 12 F -0.11 -2.14 15.55 2.25 0.04 -2.11 16 13 C -0.15 -2.94 5.88 -104.91 -0.62 -3.56 16 14 C 0.46 11.34 7.72 -12.45 -0.10 11.24 16 15 O -0.59 -16.52 14.91 5.28 0.08 -16.44 16 16 N -0.53 -13.63 5.23 -11.91 -0.06 -13.70 16 17 C -0.29 -8.00 9.68 -14.99 -0.15 -8.15 16 18 H 0.11 3.12 7.15 -52.49 -0.38 2.75 16 19 C 0.03 0.66 5.50 -17.45 -0.10 0.56 16 20 N -0.88 -22.94 13.05 55.50 0.72 -22.22 16 21 Si 0.94 20.13 29.55 -169.99 -5.02 15.11 16 22 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 23 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 24 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 25 C 0.02 0.35 9.01 -39.17 -0.35 -0.01 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.62 7.67 -51.93 -0.40 0.22 16 29 H 0.08 0.61 7.22 -51.92 -0.37 0.24 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.42 3.31 8.84 -34.47 -0.30 3.01 16 34 H 0.15 1.33 7.60 -52.49 -0.40 0.94 16 35 H 0.15 1.45 8.06 -52.48 -0.42 1.03 16 36 H 0.39 9.51 5.93 -40.82 -0.24 9.27 16 37 H 0.28 6.86 8.31 -40.82 -0.34 6.52 16 38 H 0.15 2.61 5.95 -52.48 -0.31 2.29 16 LS Contribution 344.10 15.07 5.19 5.19 Total: -1.00 -34.35 344.10 -7.80 -42.15 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -4.08 Total: 10.09 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: -2.09 Total: -10.68 kcal Atomic # 7 Polarization: -47.08 SS G_CDS: 0.64 Total: -46.45 kcal Atomic # 8 Polarization: -45.56 SS G_CDS: -1.86 Total: -47.42 kcal Atomic # 9 Polarization: -2.14 SS G_CDS: 0.04 Total: -2.11 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Atomic # 16 Polarization: 34.72 SS G_CDS: -0.61 Total: 34.11 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.35 -7.80 -42.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749609017.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.064 kcal (2) G-P(sol) polarization free energy of solvation -34.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds