Wall clock time and date at job start Tue Mar 31 2020 06:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86804 * 120.00227 * 2 1 4 4 H 1.48491 * 109.47243 * 240.00204 * 3 2 1 5 5 H 1.48507 * 109.46654 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47212 * 119.99607 * 3 2 1 7 7 C 1.38952 * 120.00226 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00012 * 180.02562 * 7 2 1 9 9 N 1.37106 * 119.99700 * 0.02562 * 7 2 1 10 10 C 1.34773 * 119.99724 * 179.97438 * 9 7 2 11 11 O 1.21296 * 120.00368 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99783 * 179.97438 * 10 9 7 13 13 O 1.45199 * 109.46928 * 179.97438 * 12 10 9 14 14 C 1.34743 * 116.99864 * 180.02562 * 13 12 10 15 15 O 1.21511 * 120.00030 * 0.02562 * 14 13 12 16 16 C 1.47486 * 120.00099 * 180.02562 * 14 13 12 17 17 C 1.40326 * 120.49764 * 179.97438 * 16 14 13 18 18 C 1.36948 * 118.46530 * 180.02562 * 17 16 14 19 19 C 1.39163 * 119.39652 * 359.97438 * 18 17 16 20 20 O 1.35489 * 119.51137 * 180.02562 * 19 18 17 21 21 C 1.42899 * 116.99987 * 179.97438 * 20 19 18 22 22 C 1.53004 * 109.46800 * 179.97438 * 21 20 19 23 23 F 1.39899 * 109.47271 * 300.00195 * 22 21 20 24 24 F 1.39905 * 109.47155 * 60.00660 * 22 21 20 25 25 N 1.32434 * 120.97770 * 0.02562 * 19 18 17 26 26 C 1.31694 * 121.66387 * 359.97438 * 25 19 18 27 27 H 0.97002 * 119.99983 * 359.97438 * 1 2 3 28 28 H 0.97000 * 119.99628 * 359.97438 * 9 7 2 29 29 H 1.09007 * 109.46707 * 60.00535 * 12 10 9 30 30 H 1.08995 * 109.47241 * 300.00436 * 12 10 9 31 31 H 1.07991 * 120.76761 * 0.04798 * 17 16 14 32 32 H 1.07999 * 120.30062 * 180.02562 * 18 17 16 33 33 H 1.09001 * 109.47317 * 300.00135 * 21 20 19 34 34 H 1.08997 * 109.47005 * 60.00834 * 21 20 19 35 35 H 1.09002 * 109.46933 * 179.97438 * 22 21 20 36 36 H 1.07999 * 119.75357 * 180.02562 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6964 -1.2124 5 1 1.2831 2.7465 0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2103 -3.5579 0.0010 12 6 1.2438 -4.8629 0.0011 13 8 2.1874 -5.9665 0.0004 14 6 1.6724 -7.2117 0.0003 15 8 0.4677 -7.3709 0.0003 16 6 2.5708 -8.3813 0.0001 17 6 2.0457 -9.6826 0.0005 18 6 2.9179 -10.7384 0.0009 19 6 4.2877 -10.4928 0.0003 20 8 5.1527 -11.5357 0.0001 21 6 6.5469 -11.2221 -0.0010 22 6 7.3609 -12.5176 -0.0004 23 9 7.0514 -13.2624 1.1427 24 9 7.0500 -13.2643 -1.1419 25 7 4.7583 -9.2549 -0.0001 26 6 3.9562 -8.2104 -0.0005 27 1 -0.4850 0.8401 0.0004 28 1 0.3534 -2.3906 0.0005 29 1 0.6169 -4.9209 -0.8887 30 1 0.6174 -4.9205 0.8913 31 1 0.9785 -9.8477 0.0001 32 1 2.5461 -11.7524 0.0008 33 1 6.7880 -10.6415 -0.8914 34 1 6.7893 -10.6408 0.8886 35 1 8.4244 -12.2785 -0.0017 36 1 4.3734 -7.2143 -0.0012 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000761503600.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:57 Heat of formation + Delta-G solvation = -220.023199 kcal Electronic energy + Delta-G solvation = -26253.295918 eV Core-core repulsion = 21567.287506 eV Total energy + Delta-G solvation = -4686.008412 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.091 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.41021 -47.43861 -41.26042 -40.15033 -38.49622 -38.00997 -36.15954 -34.03158 -33.02916 -32.02981 -31.40552 -30.33226 -28.34120 -25.18720 -24.59808 -24.31686 -22.94060 -21.29082 -19.62549 -19.35258 -18.25477 -18.11271 -18.00879 -17.76610 -17.39417 -16.74100 -16.48337 -16.24317 -16.03053 -15.70150 -14.96561 -14.62527 -14.40446 -14.18492 -14.13547 -14.06688 -13.79405 -13.78295 -13.60233 -13.25550 -12.91289 -12.77571 -12.39009 -12.09111 -11.74057 -11.64203 -11.58490 -11.13459 -10.74545 -10.50961 -10.48431 -10.43417 -10.31824 -10.04363 -9.62123 -9.03068 -8.56231 -8.11099 -6.52312 -3.94562 0.28175 0.83114 2.18524 2.41818 2.57288 3.13644 3.21418 3.21964 3.25873 3.44296 3.62204 3.70752 3.77554 3.95582 4.08440 4.27439 4.42104 4.52106 4.61878 4.72091 4.82782 4.85410 5.02716 5.12508 5.22248 5.41187 5.55359 5.65612 5.75723 5.87955 6.01920 6.48643 6.58585 7.29822 7.45265 7.73544 7.91881 8.45321 9.04280 9.36313 9.85822 10.64685 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.024222 B = 0.001904 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.692076 B =14703.421674 C =15674.005160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.025 3.975 3 Si 0.935 3.065 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.303 4.303 8 H 0.106 0.894 9 N -0.551 5.551 10 C 0.438 3.562 11 O -0.577 6.577 12 C 0.063 3.937 13 O -0.322 6.322 14 C 0.514 3.486 15 O -0.510 6.510 16 C -0.210 4.210 17 C 0.022 3.978 18 C -0.197 4.197 19 C 0.348 3.652 20 O -0.291 6.291 21 C 0.015 3.985 22 C 0.271 3.729 23 F -0.199 7.199 24 F -0.199 7.199 25 N -0.547 5.547 26 C 0.209 3.791 27 H 0.275 0.725 28 H 0.395 0.605 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.158 0.842 32 H 0.152 0.848 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.135 0.865 36 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.792 -23.266 -0.006 24.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.178 4.178 3 Si 0.762 3.238 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.432 4.432 8 H 0.124 0.876 9 N -0.188 5.188 10 C 0.222 3.778 11 O -0.461 6.461 12 C -0.015 4.015 13 O -0.236 6.236 14 C 0.358 3.642 15 O -0.400 6.400 16 C -0.214 4.214 17 C -0.003 4.003 18 C -0.217 4.217 19 C 0.170 3.830 20 O -0.197 6.197 21 C -0.061 4.061 22 C 0.217 3.783 23 F -0.180 7.180 24 F -0.180 7.180 25 N -0.271 5.271 26 C 0.053 3.947 27 H 0.085 0.915 28 H 0.229 0.771 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.176 0.824 32 H 0.170 0.830 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.152 0.848 36 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 9.961 -23.322 -0.006 25.360 hybrid contribution -1.210 0.816 0.001 1.459 sum 8.752 -22.506 -0.005 24.148 Atomic orbital electron populations 1.69606 1.05996 1.28632 1.49450 1.25322 0.95698 0.99897 0.96832 0.85849 0.78748 0.80043 0.79196 1.19743 1.20875 1.19748 1.19676 0.93454 0.81731 1.48375 0.87631 1.41696 1.09395 1.04077 1.63682 1.19287 0.88333 0.84031 0.86111 1.90558 1.13367 1.86777 1.55387 1.22790 0.90746 0.84232 1.03716 1.86564 1.40144 1.13812 1.83085 1.20731 0.86871 0.83508 0.73063 1.90839 1.15833 1.86926 1.46444 1.20002 0.94543 0.92318 1.14495 1.21280 1.01420 0.89499 0.88081 1.20740 0.89717 1.01630 1.09608 1.20125 0.88302 0.85675 0.88916 1.86255 1.16488 1.29814 1.87167 1.23938 0.79273 0.96274 1.06624 1.22146 1.00063 0.84421 0.71667 1.93030 1.94987 1.79079 1.50897 1.93032 1.94965 1.78989 1.51018 1.67507 1.40415 0.98345 1.20837 1.23114 0.88414 0.97539 0.85658 0.91545 0.77124 0.89341 0.89331 0.82431 0.82987 0.87924 0.87934 0.84829 0.79738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.69 13.05 55.50 0.72 -22.97 16 2 C 0.03 0.65 5.50 -17.47 -0.10 0.56 16 3 Si 0.94 20.40 29.55 -169.99 -5.02 15.38 16 4 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 6 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 7 C -0.30 -8.21 9.68 -14.93 -0.14 -8.35 16 8 H 0.11 2.97 7.16 -52.49 -0.38 2.60 16 9 N -0.55 -13.61 5.29 -10.96 -0.06 -13.67 16 10 C 0.44 10.20 7.86 -10.99 -0.09 10.12 16 11 O -0.58 -15.44 16.08 -14.12 -0.23 -15.67 16 12 C 0.06 1.14 5.95 36.01 0.21 1.36 16 13 O -0.32 -5.65 9.02 -47.29 -0.43 -6.08 16 14 C 0.51 7.87 7.90 34.50 0.27 8.14 16 15 O -0.51 -8.54 16.20 -19.27 -0.31 -8.85 16 16 C -0.21 -2.59 5.89 -104.84 -0.62 -3.21 16 17 C 0.02 0.22 9.66 -39.26 -0.38 -0.16 16 18 C -0.20 -1.80 9.97 -39.71 -0.40 -2.19 16 19 C 0.35 3.63 7.49 -16.95 -0.13 3.50 16 20 O -0.29 -2.82 9.99 -18.16 -0.18 -3.00 16 21 C 0.02 0.10 5.52 37.16 0.21 0.31 16 22 C 0.27 1.52 5.63 37.16 0.21 1.73 16 23 F -0.20 -1.65 17.28 2.25 0.04 -1.61 16 24 F -0.20 -1.65 17.28 2.25 0.04 -1.61 16 25 N -0.55 -6.13 9.19 -12.94 -0.12 -6.25 16 26 C 0.21 2.48 10.79 -17.11 -0.18 2.30 16 27 H 0.27 6.87 8.31 -40.82 -0.34 6.54 16 28 H 0.40 9.24 7.90 -40.82 -0.32 8.92 16 29 H 0.09 1.46 8.14 -51.92 -0.42 1.04 16 30 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 31 H 0.16 1.36 7.73 -52.49 -0.41 0.96 16 32 H 0.15 1.03 8.06 -52.49 -0.42 0.61 16 33 H 0.10 0.60 8.10 -51.93 -0.42 0.18 16 34 H 0.10 0.60 8.10 -51.93 -0.42 0.18 16 35 H 0.13 0.17 8.14 -51.93 -0.42 -0.25 16 36 H 0.19 2.18 7.62 -52.49 -0.40 1.78 16 LS Contribution 343.47 15.07 5.18 5.18 Total: -1.00 -33.42 343.47 -4.67 -38.09 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -3.17 Total: 6.96 kcal Atomic # 6 Polarization: 15.23 SS G_CDS: -1.13 Total: 14.10 kcal Atomic # 7 Polarization: -43.44 SS G_CDS: 0.55 Total: -42.89 kcal Atomic # 8 Polarization: -32.45 SS G_CDS: -1.15 Total: -33.60 kcal Atomic # 9 Polarization: -3.29 SS G_CDS: 0.08 Total: -3.22 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.42 -4.67 -38.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761503600.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -181.937 kcal (2) G-P(sol) polarization free energy of solvation -33.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -215.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -220.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds