Wall clock time and date at job start Tue Mar 31 2020 06:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47000 * 2 1 4 4 H 1.08999 * 109.47091 * 55.00324 * 3 2 1 5 5 C 1.50706 * 109.46812 * 174.99913 * 3 2 1 6 6 H 1.07998 * 119.99769 * 120.00769 * 5 3 2 7 7 C 1.37877 * 120.00286 * 299.99911 * 5 3 2 8 8 N 1.31515 * 119.99896 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99872 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47221 * 60.00660 * 9 7 5 11 11 H 1.48504 * 109.46710 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47441 * 300.00053 * 9 7 5 13 13 N 1.46499 * 109.47341 * 295.00080 * 3 2 1 14 14 C 1.34777 * 119.99665 * 85.27876 * 13 3 2 15 15 O 1.21563 * 120.00283 * 359.72077 * 14 13 3 16 16 C 1.47730 * 119.99572 * 179.72382 * 14 13 3 17 17 C 1.39671 * 120.11870 * 359.97438 * 16 14 13 18 18 C 1.37810 * 119.88016 * 180.02562 * 17 16 14 19 19 C 1.38681 * 120.11863 * 0.02562 * 18 17 16 20 20 F 1.35097 * 119.88270 * 179.97438 * 19 18 17 21 21 C 1.38639 * 120.23749 * 0.02562 * 19 18 17 22 22 S 1.76201 * 119.94184 * 179.97438 * 21 19 18 23 23 N 1.65607 * 107.21620 * 295.00187 * 22 21 19 24 24 O 1.42104 * 106.40181 * 48.53988 * 22 21 19 25 25 O 1.42097 * 106.40308 * 181.46191 * 22 21 19 26 26 C 1.37858 * 120.11731 * 359.67551 * 21 19 18 27 27 H 1.09004 * 109.47177 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46986 * 299.99873 * 1 2 3 29 29 H 1.09003 * 109.47322 * 59.99862 * 1 2 3 30 30 H 1.09002 * 109.46986 * 240.00127 * 2 1 3 31 31 H 1.08994 * 109.47111 * 120.00040 * 2 1 3 32 32 H 0.96999 * 119.99952 * 179.97438 * 8 7 5 33 33 H 0.97001 * 119.99790 * 264.99588 * 13 3 2 34 34 H 1.07997 * 120.05840 * 0.02828 * 17 16 14 35 35 H 1.07997 * 119.94653 * 180.02562 * 18 17 16 36 36 H 0.96993 * 120.00074 * 0.02562 * 23 22 21 37 37 H 0.96999 * 119.99432 * 179.97438 * 23 22 21 38 38 H 1.08000 * 120.05903 * 180.29987 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1471 1.8889 -0.6522 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3366 2.1729 9 14 6.0049 0.8812 1.3817 10 1 6.4994 2.2814 1.3822 11 1 6.3978 0.2166 2.6503 12 1 6.5975 0.1473 0.2349 13 7 1.6524 2.0975 -1.2518 14 6 0.4371 2.6693 -1.3649 15 8 -0.3392 2.6371 -0.4300 16 6 0.0487 3.3352 -2.6251 17 6 0.9389 3.3740 -3.7006 18 6 0.5716 3.9969 -4.8738 19 6 -0.6792 4.5850 -4.9874 20 9 -1.0341 5.1948 -6.1394 21 6 -1.5663 4.5502 -3.9225 22 16 -3.1533 5.3004 -4.0752 23 7 -2.9105 6.9287 -4.2555 24 8 -3.6995 4.8378 -5.3028 25 8 -3.8010 5.1277 -2.8223 26 6 -1.2114 3.9244 -2.7466 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.8293 -0.0619 2.9495 33 1 2.2719 2.1232 -1.9977 34 1 1.9134 2.9167 -3.6130 35 1 1.2590 4.0272 -5.7062 36 1 -2.0091 7.2869 -4.2608 37 1 -3.6697 7.5239 -4.3565 38 1 -1.9050 3.8936 -1.9194 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000762718663.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:05 Heat of formation + Delta-G solvation = -130.310015 kcal Electronic energy + Delta-G solvation = -26036.390733 eV Core-core repulsion = 21920.485752 eV Total energy + Delta-G solvation = -4115.904981 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.088 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.63810 -40.10133 -38.21687 -37.34103 -36.07872 -35.21867 -33.53025 -32.83072 -31.85623 -31.43174 -30.38639 -27.10543 -24.26550 -23.96906 -22.89216 -21.04917 -19.87537 -19.53155 -18.97686 -17.88033 -17.69225 -17.46240 -16.96673 -16.22121 -16.07997 -15.65651 -15.53075 -15.31428 -14.73945 -14.62625 -14.43310 -13.78760 -13.62520 -13.21802 -12.90480 -12.73638 -12.43029 -12.36678 -12.26261 -12.16790 -11.99960 -11.59443 -11.32647 -11.15738 -11.08126 -10.89922 -10.81348 -10.41877 -10.27877 -10.00132 -9.72796 -9.34545 -9.18813 -9.15455 -8.59289 -8.00155 -6.20669 -4.31272 -0.01873 0.20151 0.59927 2.51247 2.81278 3.19366 3.25107 3.25898 3.28130 3.48988 3.70731 3.77392 4.08355 4.26933 4.50658 4.59432 4.78444 4.90497 5.10797 5.19348 5.37005 5.49233 5.64227 5.68145 5.84195 6.24631 6.32988 6.38641 6.58191 6.67080 6.95711 7.10878 7.22255 7.29974 7.51175 7.60628 7.78976 8.08048 8.45588 8.64098 8.90043 9.35953 10.84536 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.022863 B = 0.002962 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.396566 B = 9451.727000 C =10074.226219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.053 0.947 5 C -0.539 4.539 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.880 5.880 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.276 1.276 13 N -0.698 5.698 14 C 0.541 3.459 15 O -0.533 6.533 16 C -0.146 4.146 17 C -0.005 4.005 18 C -0.174 4.174 19 C 0.201 3.799 20 F -0.119 7.119 21 C -0.720 4.720 22 S 2.706 3.294 23 N -1.247 6.247 24 O -0.953 6.953 25 O -0.951 6.951 26 C 0.060 3.940 27 H 0.025 0.975 28 H 0.051 0.949 29 H 0.037 0.963 30 H 0.032 0.968 31 H 0.101 0.899 32 H 0.266 0.734 33 H 0.387 0.613 34 H 0.150 0.850 35 H 0.152 0.848 36 H 0.416 0.584 37 H 0.422 0.578 38 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.421 10.925 -15.122 19.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.167 4.167 3 C 0.169 3.831 4 H 0.071 0.929 5 C -0.577 4.577 6 H 0.079 0.921 7 C -0.135 4.135 8 N -0.517 5.517 9 Si 0.730 3.270 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.346 5.346 14 C 0.325 3.675 15 O -0.412 6.412 16 C -0.151 4.151 17 C -0.024 4.024 18 C -0.194 4.194 19 C 0.180 3.820 20 F -0.097 7.097 21 C -0.807 4.807 22 S 2.793 3.207 23 N -0.923 5.923 24 O -0.943 6.943 25 O -0.940 6.940 26 C 0.040 3.960 27 H 0.044 0.956 28 H 0.070 0.930 29 H 0.056 0.944 30 H 0.051 0.949 31 H 0.119 0.881 32 H 0.076 0.924 33 H 0.220 0.780 34 H 0.168 0.832 35 H 0.170 0.830 36 H 0.243 0.757 37 H 0.252 0.748 38 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -7.783 10.138 -14.223 19.121 hybrid contribution 2.216 0.432 -0.593 2.335 sum -5.567 10.570 -14.816 19.032 Atomic orbital electron populations 1.21858 0.98260 0.98309 1.01258 1.21947 0.92678 0.99576 1.02471 1.18885 0.94399 0.89309 0.80531 0.92916 1.21150 0.90480 1.39600 1.06506 0.92118 1.24878 0.98689 0.94668 0.95314 1.69875 1.35337 1.37157 1.09314 0.86499 0.84673 0.78330 0.77540 1.20165 1.21074 1.20148 1.46491 1.14145 1.55085 1.18846 1.17908 0.83431 0.79791 0.86375 1.90798 1.51186 1.59860 1.39395 1.20621 0.95367 1.02752 0.96341 1.21667 0.99015 0.91166 0.90583 1.21188 0.95733 1.02067 1.00365 1.17255 0.93036 0.91377 0.80304 1.91624 1.91890 1.79726 1.46438 1.30592 1.25037 1.23461 1.01600 1.01574 0.72354 0.72542 0.74275 1.52971 1.17296 1.27704 1.94311 1.93638 1.75249 1.79681 1.45684 1.93640 1.71454 1.84991 1.43963 1.21060 0.95034 0.85727 0.94138 0.95636 0.92963 0.94394 0.94938 0.88083 0.92361 0.77956 0.83206 0.82988 0.75673 0.74754 0.81329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 8.52 37.16 0.32 -2.69 16 2 C -0.13 -2.97 5.45 -26.73 -0.15 -3.12 16 3 C 0.27 6.39 2.24 -69.08 -0.15 6.24 16 4 H 0.05 1.46 7.57 -51.93 -0.39 1.06 16 5 C -0.54 -13.43 8.73 -34.44 -0.30 -13.73 16 6 H 0.06 1.42 7.74 -52.49 -0.41 1.02 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -23.75 11.29 55.43 0.63 -23.12 16 9 Si 0.90 19.74 29.54 -169.99 -5.02 14.72 16 10 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 11 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 12 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 13 N -0.70 -13.21 4.97 -55.91 -0.28 -13.49 16 14 C 0.54 9.99 6.35 -12.38 -0.08 9.91 16 15 O -0.53 -11.75 13.49 5.31 0.07 -11.68 16 16 C -0.15 -2.07 5.87 -104.97 -0.62 -2.69 16 17 C -0.01 -0.06 9.54 -39.20 -0.37 -0.43 16 18 C -0.17 -1.59 10.01 -39.57 -0.40 -1.99 16 19 C 0.20 2.09 7.22 -39.27 -0.28 1.81 16 20 F -0.12 -1.19 16.26 2.25 0.04 -1.16 16 21 C -0.72 -8.23 5.88 -39.57 -0.23 -8.46 16 22 S 2.71 29.30 5.92 -107.50 -0.64 28.66 16 23 N -1.25 -8.07 9.55 60.35 0.58 -7.49 16 24 O -0.95 -13.03 17.42 -57.17 -1.00 -14.03 16 25 O -0.95 -13.23 16.96 -57.17 -0.97 -14.20 16 26 C 0.06 0.82 9.09 -39.20 -0.36 0.46 16 27 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.05 1.20 7.85 -51.93 -0.41 0.79 16 29 H 0.04 0.79 5.66 -51.93 -0.29 0.50 16 30 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.10 2.61 5.95 -51.93 -0.31 2.30 16 32 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 33 H 0.39 6.06 6.57 -40.82 -0.27 5.79 16 34 H 0.15 1.27 6.40 -52.49 -0.34 0.93 16 35 H 0.15 0.94 8.06 -52.49 -0.42 0.51 16 36 H 0.42 1.83 8.92 -34.47 -0.31 1.52 16 37 H 0.42 1.86 8.96 -34.47 -0.31 1.55 16 38 H 0.17 2.42 6.91 -52.49 -0.36 2.06 16 LS Contribution 336.09 15.07 5.06 5.06 Total: -1.00 -33.78 336.09 -8.04 -41.81 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -3.80 Total: 7.93 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: -2.72 Total: -13.03 kcal Atomic # 7 Polarization: -45.03 SS G_CDS: 0.92 Total: -44.10 kcal Atomic # 8 Polarization: -38.01 SS G_CDS: -1.89 Total: -39.90 kcal Atomic # 9 Polarization: -1.19 SS G_CDS: 0.04 Total: -1.16 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.72 kcal Atomic # 16 Polarization: 29.30 SS G_CDS: -0.64 Total: 28.66 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.78 -8.04 -41.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762718663.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.496 kcal (2) G-P(sol) polarization free energy of solvation -33.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds