Wall clock time and date at job start Tue Mar 31 2020 06:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99628 * 2 1 4 4 H 1.48495 * 109.47305 * 270.00333 * 3 2 1 5 5 H 1.48500 * 109.46951 * 30.00263 * 3 2 1 6 6 H 1.48497 * 109.47127 * 149.99958 * 3 2 1 7 7 C 1.37877 * 120.00614 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99195 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00427 * 179.97438 * 7 2 1 10 10 N 1.46491 * 109.47292 * 180.02562 * 9 7 2 11 11 C 1.34779 * 120.00305 * 179.97438 * 10 9 7 12 12 O 1.21286 * 119.99580 * 0.02562 * 11 10 9 13 13 C 1.50700 * 120.00490 * 179.97438 * 11 10 9 14 14 O 1.45196 * 109.47033 * 180.02562 * 13 11 10 15 15 C 1.34726 * 116.99736 * 179.97438 * 14 13 11 16 16 O 1.21462 * 119.99525 * 0.02562 * 15 14 13 17 17 C 1.47803 * 119.99880 * 180.02562 * 15 14 13 18 18 C 1.39516 * 119.66055 * 180.02562 * 17 15 14 19 19 C 1.38315 * 119.12964 * 179.97438 * 18 17 15 20 20 C 1.39229 * 118.44981 * 0.02562 * 19 18 17 21 21 O 1.35705 * 120.38290 * 180.02562 * 20 19 18 22 22 C 1.42898 * 117.00433 * 180.02562 * 21 20 19 23 23 F 1.39899 * 109.46848 * 299.99497 * 22 21 20 24 24 F 1.39898 * 109.47181 * 59.99421 * 22 21 20 25 25 C 1.39272 * 119.23975 * 359.97438 * 20 19 18 26 26 N 1.31346 * 120.81147 * 0.02562 * 25 20 19 27 27 H 0.96999 * 120.00179 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.47034 * 59.99886 * 9 7 2 29 29 H 1.09002 * 109.46901 * 300.00554 * 9 7 2 30 30 H 0.97002 * 120.00246 * 359.97438 * 10 9 7 31 31 H 1.08996 * 109.47089 * 60.00157 * 13 11 10 32 32 H 1.09000 * 109.46804 * 300.00682 * 13 11 10 33 33 H 1.08001 * 120.43176 * 0.24987 * 18 17 15 34 34 H 1.08001 * 120.77448 * 180.02562 * 19 18 17 35 35 H 1.09007 * 109.47208 * 179.97438 * 22 21 20 36 36 H 1.08000 * 119.59193 * 179.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1939 -0.0011 10 7 4.0000 -2.5750 -0.0022 11 6 5.3251 -2.8213 -0.0034 12 8 6.1131 -1.8994 -0.0031 13 6 5.8275 -4.2421 -0.0040 14 8 7.2795 -4.2419 -0.0047 15 6 7.8912 -5.4423 -0.0047 16 8 7.2297 -6.4609 -0.0046 17 6 9.3672 -5.5195 -0.0048 18 6 9.9933 -6.7663 -0.0054 19 6 11.3752 -6.8257 -0.0060 20 6 12.0905 -5.6312 -0.0055 21 8 13.4475 -5.6438 -0.0066 22 6 14.1081 -4.3767 -0.0054 23 9 13.7380 -3.6569 -1.1465 24 9 13.7397 -3.6598 1.1380 25 6 11.3974 -4.4232 -0.0049 26 7 10.0841 -4.4011 -0.0044 27 1 -0.4850 0.8400 0.0004 28 1 3.8752 -0.6803 0.8888 29 1 3.8745 -0.6798 -0.8911 30 1 3.3697 -3.3124 -0.0021 31 1 5.4635 -4.7558 -0.8937 32 1 5.4649 -4.7560 0.8862 33 1 9.4067 -7.6730 -0.0098 34 1 11.8874 -7.7766 -0.0069 35 1 15.1874 -4.5296 -0.0060 36 1 11.9465 -3.4933 -0.0041 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000772563112.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:09 Heat of formation + Delta-G solvation = -217.048357 kcal Electronic energy + Delta-G solvation = -26561.441030 eV Core-core repulsion = 21875.561616 eV Total energy + Delta-G solvation = -4685.879413 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.091 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.01533 -47.99928 -41.40589 -40.37708 -38.97563 -38.50325 -36.47935 -34.33834 -33.11562 -32.41071 -31.62349 -29.49994 -27.48961 -26.87369 -25.06217 -24.08507 -22.28318 -21.53662 -20.09159 -19.86718 -19.18114 -18.62291 -18.58824 -17.57062 -17.02694 -16.76551 -16.75761 -16.08199 -15.94002 -15.58866 -15.16231 -14.96207 -14.83983 -14.63019 -14.31552 -14.25014 -14.00074 -13.89345 -13.64235 -13.62484 -13.15843 -12.97192 -12.66862 -12.42509 -12.33656 -12.04570 -11.09635 -11.02132 -10.82986 -10.72554 -10.49386 -10.11796 -9.97825 -9.52044 -9.39005 -9.30035 -8.79620 -8.23273 -6.22327 -4.25202 -0.03633 0.57841 1.70422 2.03050 2.18667 2.78373 3.07142 3.23794 3.27604 3.34166 3.42932 3.54928 3.60077 3.86153 3.93361 3.93649 4.22837 4.33103 4.38548 4.60436 4.83086 5.01256 5.11636 5.12295 5.18132 5.25074 5.32511 5.57884 6.04027 6.13380 6.76274 7.04005 7.08314 7.14400 7.34352 7.54932 8.07653 8.43949 8.71090 8.83234 9.36986 10.89393 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.019740 B = 0.002131 C = 0.001948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.117759 B =13135.133872 C =14368.157470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.078 3.922 3 Si 0.877 3.123 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.545 4.545 8 H 0.081 0.919 9 C 0.222 3.778 10 N -0.700 5.700 11 C 0.501 3.499 12 O -0.531 6.531 13 C 0.046 3.954 14 O -0.304 6.304 15 C 0.526 3.474 16 O -0.500 6.500 17 C 0.068 3.932 18 C -0.068 4.068 19 C -0.100 4.100 20 C 0.083 3.917 21 O -0.311 6.311 22 C 0.409 3.591 23 F -0.193 7.193 24 F -0.193 7.193 25 C 0.040 3.960 26 N -0.388 5.388 27 H 0.268 0.732 28 H 0.028 0.972 29 H 0.023 0.977 30 H 0.399 0.601 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.165 0.835 34 H 0.160 0.840 35 H 0.190 0.810 36 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.462 -16.230 0.007 34.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.184 1.184 7 C -0.583 4.583 8 H 0.099 0.901 9 C 0.101 3.899 10 N -0.351 5.351 11 C 0.284 3.716 12 O -0.408 6.408 13 C -0.031 4.031 14 O -0.217 6.217 15 C 0.369 3.631 16 O -0.388 6.388 17 C -0.068 4.068 18 C -0.088 4.088 19 C -0.126 4.126 20 C 0.037 3.963 21 O -0.227 6.227 22 C 0.319 3.681 23 F -0.175 7.175 24 F -0.175 7.175 25 C -0.123 4.123 26 N -0.099 5.099 27 H 0.078 0.922 28 H 0.046 0.954 29 H 0.041 0.959 30 H 0.233 0.767 31 H 0.119 0.881 32 H 0.119 0.881 33 H 0.182 0.818 34 H 0.177 0.823 35 H 0.206 0.794 36 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 30.245 -15.027 0.010 33.773 hybrid contribution 0.244 0.015 -0.024 0.246 sum 30.489 -15.012 -0.014 33.984 Atomic orbital electron populations 1.69875 1.06209 1.27488 1.49254 1.24789 0.94805 0.99195 0.93807 0.86817 0.80604 0.83179 0.79114 1.19793 1.20866 1.18421 1.21067 0.88350 0.95327 1.53560 0.90118 1.19548 0.95315 0.77993 0.97088 1.46048 1.04798 1.11496 1.72744 1.19882 0.83714 0.89376 0.78583 1.90727 1.55259 1.45550 1.49263 1.22923 0.77533 0.97659 1.05011 1.86741 1.21686 1.30765 1.82479 1.20593 0.87612 0.81921 0.73003 1.90868 1.65676 1.36115 1.46109 1.20045 0.91266 0.89844 1.05674 1.21994 0.93848 0.98708 0.94215 1.20915 0.92741 0.97273 1.01664 1.20356 0.82456 0.96323 0.97207 1.86619 1.17427 1.30878 1.87754 1.23551 0.97528 0.74949 0.72053 1.93145 1.93427 1.78995 1.51894 1.93145 1.93470 1.79135 1.51715 1.23451 0.90667 0.96876 1.01272 1.67664 1.06720 1.30015 1.05537 0.92207 0.95414 0.95880 0.76736 0.88054 0.88057 0.81793 0.82256 0.79369 0.81105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.43 13.96 55.43 0.77 -25.65 16 2 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 3 Si 0.88 21.49 27.47 -169.99 -4.67 16.82 16 4 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 6 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 7 C -0.55 -14.90 9.83 -34.44 -0.34 -15.24 16 8 H 0.08 2.28 7.84 -52.49 -0.41 1.87 16 9 C 0.22 5.47 4.50 -5.20 -0.02 5.45 16 10 N -0.70 -14.15 5.55 -61.48 -0.34 -14.49 16 11 C 0.50 9.88 7.91 -10.98 -0.09 9.79 16 12 O -0.53 -12.77 16.50 -14.11 -0.23 -13.00 16 13 C 0.05 0.70 5.95 36.01 0.21 0.91 16 14 O -0.30 -5.08 9.57 -47.24 -0.45 -5.54 16 15 C 0.53 7.57 7.94 34.64 0.28 7.85 16 16 O -0.50 -7.25 16.10 -19.24 -0.31 -7.56 16 17 C 0.07 0.85 6.74 -83.04 -0.56 0.29 16 18 C -0.07 -0.58 9.62 -39.08 -0.38 -0.96 16 19 C -0.10 -0.68 10.12 -39.18 -0.40 -1.08 16 20 C 0.08 0.67 6.51 -38.83 -0.25 0.42 16 21 O -0.31 -1.82 10.43 -18.82 -0.20 -2.01 16 22 C 0.41 1.60 5.98 101.05 0.60 2.20 16 23 F -0.19 -1.21 15.59 2.25 0.04 -1.17 16 24 F -0.19 -1.21 15.60 2.25 0.04 -1.17 16 25 C 0.04 0.42 9.44 -17.37 -0.16 0.26 16 26 N -0.39 -5.27 10.11 -9.69 -0.10 -5.36 16 27 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 28 H 0.03 0.72 7.20 -51.93 -0.37 0.35 16 29 H 0.02 0.59 7.57 -51.93 -0.39 0.20 16 30 H 0.40 6.90 8.32 -40.82 -0.34 6.56 16 31 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.16 1.09 7.63 -52.49 -0.40 0.69 16 34 H 0.16 0.57 8.06 -52.49 -0.42 0.15 16 35 H 0.19 -0.26 8.14 -51.93 -0.42 -0.68 16 36 H 0.17 1.66 5.11 -52.49 -0.27 1.39 16 LS Contribution 336.09 15.07 5.06 5.06 Total: -1.00 -36.63 336.09 -4.64 -41.27 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: -3.04 Total: 0.81 kcal Atomic # 6 Polarization: 13.20 SS G_CDS: -1.20 Total: 12.00 kcal Atomic # 7 Polarization: -45.84 SS G_CDS: 0.33 Total: -45.50 kcal Atomic # 8 Polarization: -26.92 SS G_CDS: -1.19 Total: -28.12 kcal Atomic # 9 Polarization: -2.42 SS G_CDS: 0.07 Total: -2.35 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.82 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -36.63 -4.64 -41.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772563112.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -175.777 kcal (2) G-P(sol) polarization free energy of solvation -36.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -217.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds