Wall clock time and date at job start Tue Mar 31 2020 05:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86797 * 120.00367 * 2 1 4 4 H 1.48495 * 109.46797 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.46839 * 239.99564 * 3 2 1 6 6 H 1.48500 * 109.47059 * 119.99823 * 3 2 1 7 7 C 1.39956 * 119.99577 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99694 * 154.86177 * 7 2 1 9 9 C 1.41393 * 120.00108 * 334.86373 * 7 2 1 10 10 C 1.40728 * 120.24555 * 333.77673 * 9 7 2 11 11 C 1.37601 * 119.74413 * 179.67112 * 10 9 7 12 12 C 1.38655 * 120.24782 * 0.63000 * 11 10 9 13 13 C 1.38611 * 120.50123 * 359.66522 * 12 11 10 14 14 C 1.37640 * 120.24690 * 0.02562 * 13 12 11 15 15 C 1.50700 * 120.12606 * 179.97438 * 14 13 12 16 16 C 1.50695 * 109.47266 * 265.01946 * 15 14 13 17 17 O 1.21285 * 119.99985 * 359.97438 * 16 15 14 18 18 N 1.34776 * 119.99918 * 179.97438 * 16 15 14 19 19 C 1.46505 * 119.99661 * 180.02562 * 18 16 15 20 20 C 1.53006 * 109.47131 * 180.02562 * 19 18 16 21 21 H 1.09003 * 109.57993 * 65.26568 * 20 19 18 22 22 C 1.53227 * 109.58126 * 185.68136 * 20 19 18 23 23 N 1.47275 * 108.80334 * 119.78837 * 22 20 19 24 24 C 1.47318 * 110.15108 * 60.81355 * 23 22 20 25 25 C 1.53207 * 108.80600 * 299.18926 * 24 23 22 26 26 N 1.47275 * 109.57825 * 305.00295 * 20 19 18 27 27 C 1.47312 * 110.15309 * 301.01466 * 26 20 19 28 28 C 1.47309 * 110.15519 * 299.19442 * 23 22 20 29 29 H 0.96999 * 120.00424 * 174.28958 * 1 2 3 30 30 H 1.08005 * 120.12898 * 0.02562 * 10 9 7 31 31 H 1.08001 * 119.87605 * 180.33606 * 11 10 9 32 32 H 1.08002 * 119.75025 * 179.69289 * 12 11 10 33 33 H 1.07999 * 119.87545 * 180.02562 * 13 12 11 34 34 H 1.09002 * 109.47274 * 25.02077 * 15 14 13 35 35 H 1.09005 * 109.47269 * 145.01387 * 15 14 13 36 36 H 0.96996 * 120.00327 * 0.02562 * 18 16 15 37 37 H 1.09001 * 109.46748 * 299.99939 * 19 18 16 38 38 H 1.08997 * 109.47379 * 59.99891 * 19 18 16 39 39 H 1.08999 * 109.57916 * 239.58607 * 22 20 19 40 40 H 1.08994 * 109.58319 * 359.97438 * 22 20 19 41 41 H 1.09004 * 109.57612 * 179.39683 * 24 23 22 42 42 H 1.08992 * 109.58786 * 58.99159 * 24 23 22 43 43 H 1.08999 * 109.57924 * 240.20682 * 25 24 23 44 44 H 1.08999 * 109.69245 * 119.86624 * 25 24 23 45 45 H 1.09005 * 109.58066 * 58.98939 * 27 26 20 46 46 H 1.08997 * 109.58517 * 179.39592 * 27 26 20 47 47 H 1.09001 * 109.58112 * 180.60787 * 28 23 22 48 48 H 1.09000 * 109.57983 * 301.00976 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 1.2774 2.7463 -0.0006 5 1 3.0961 1.6961 -1.2125 6 1 3.0960 1.6963 1.2125 7 6 2.0079 -1.2121 0.0005 8 1 3.0112 -1.2566 -0.3968 9 6 1.4013 -2.3784 0.5212 10 6 0.3951 -2.2775 1.4999 11 6 -0.1930 -3.4189 1.9945 12 6 0.2114 -4.6655 1.5417 13 6 1.2058 -4.7770 0.5826 14 6 1.8036 -3.6485 0.0691 15 6 2.8849 -3.7730 -0.9732 16 6 4.2343 -3.7452 -0.3029 17 8 4.3105 -3.6347 0.9025 18 7 5.3564 -3.8431 -1.0430 19 6 6.6683 -3.8167 -0.3913 20 6 7.7661 -3.9429 -1.4495 21 1 7.7531 -3.0653 -2.0959 22 6 9.1308 -4.0581 -0.7624 23 7 9.7474 -5.3402 -1.1434 24 6 9.9441 -5.3951 -2.6023 25 6 8.5796 -5.2798 -3.2894 26 7 7.5370 -5.1535 -2.2563 27 6 7.5343 -6.3464 -1.3921 28 6 8.8988 -6.4616 -0.7050 29 1 -0.4851 -0.8358 -0.0836 30 1 0.0816 -1.3077 1.8572 31 1 -0.9693 -3.3437 2.7416 32 1 -0.2522 -5.5563 1.9391 33 1 1.5127 -5.7531 0.2368 34 1 2.7653 -4.7139 -1.5103 35 1 2.8105 -2.9422 -1.6749 36 1 5.2955 -3.9312 -2.0070 37 1 6.7882 -2.8757 0.1457 38 1 6.7422 -4.6475 0.3104 39 1 9.7711 -3.2357 -1.0816 40 1 8.9996 -4.0227 0.3190 41 1 10.4104 -6.3426 -2.8726 42 1 10.5822 -4.5691 -2.9163 43 1 8.3952 -6.1723 -3.8873 44 1 8.5653 -4.3998 -3.9324 45 1 6.7528 -6.2497 -0.6383 46 1 7.3535 -7.2352 -1.9966 47 1 9.3687 -7.4054 -0.9819 48 1 8.7681 -6.4198 0.3764 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776984724.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:34 Heat of formation + Delta-G solvation = 3.172549 kcal Electronic energy + Delta-G solvation = -28578.872897 eV Core-core repulsion = 24826.157360 eV Total energy + Delta-G solvation = -3752.715537 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.184 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.50921 -39.09272 -37.47132 -34.90287 -33.78699 -33.15597 -32.02258 -31.45918 -31.34319 -29.16107 -27.45823 -25.79638 -24.76987 -24.12595 -23.60899 -22.22956 -20.88679 -20.53599 -19.46335 -18.33256 -17.69169 -17.42994 -17.06586 -16.50297 -15.74597 -15.40177 -15.10691 -14.75570 -14.32957 -14.07160 -13.79007 -13.52873 -13.42369 -13.37714 -13.33710 -13.12884 -12.68142 -12.64999 -12.40718 -12.29195 -12.06365 -11.91009 -11.67417 -11.17991 -11.05511 -10.97591 -10.89006 -10.80930 -10.76004 -10.41914 -10.35295 -10.19778 -9.59321 -9.32159 -9.14925 -8.90889 -8.62358 -8.07939 -7.49727 -7.44188 -7.06654 -4.36151 2.81064 2.90456 3.18455 3.27975 3.32461 3.39881 3.40951 3.66674 3.83247 4.06569 4.27703 4.34289 4.51538 4.55487 4.65490 4.79323 4.97025 5.10181 5.12245 5.16597 5.22705 5.38529 5.40184 5.45832 5.51362 5.55728 5.60847 5.70793 5.79032 5.84764 6.00681 6.14031 6.23193 6.25445 6.30409 6.40150 6.42018 6.73342 6.75362 6.77758 6.89576 7.05772 7.26950 7.48263 7.74029 7.88731 7.92164 8.00289 8.07145 8.27331 8.40890 8.85022 8.93400 8.98807 10.13000 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.014921 B = 0.003218 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.147786 B = 8697.661472 C = 9963.615429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.040 3.960 3 Si 1.060 2.940 4 H -0.274 1.274 5 H -0.277 1.277 6 H -0.275 1.275 7 C -0.517 4.517 8 H 0.072 0.928 9 C 0.116 3.884 10 C -0.216 4.216 11 C -0.087 4.087 12 C -0.253 4.253 13 C -0.070 4.070 14 C -0.181 4.181 15 C -0.069 4.069 16 C 0.514 3.486 17 O -0.527 6.527 18 N -0.734 5.734 19 C 0.134 3.866 20 C 0.029 3.971 21 H 0.095 0.905 22 C 0.018 3.982 23 N -0.515 5.515 24 C 0.010 3.990 25 C 0.011 3.989 26 N -0.508 5.508 27 C 0.007 3.993 28 C 0.010 3.990 29 H 0.299 0.701 30 H 0.104 0.896 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.094 0.906 36 H 0.402 0.598 37 H 0.070 0.930 38 H 0.061 0.939 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.088 0.912 46 H 0.080 0.920 47 H 0.080 0.920 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.315 -8.495 -7.889 20.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.181 4.181 3 Si 0.884 3.116 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.201 1.201 7 C -0.545 4.545 8 H 0.090 0.910 9 C 0.113 3.887 10 C -0.235 4.235 11 C -0.106 4.106 12 C -0.272 4.272 13 C -0.089 4.089 14 C -0.183 4.183 15 C -0.109 4.109 16 C 0.301 3.699 17 O -0.401 6.401 18 N -0.389 5.389 19 C 0.009 3.991 20 C -0.081 4.081 21 H 0.114 0.886 22 C -0.113 4.113 23 N -0.236 5.236 24 C -0.120 4.120 25 C -0.119 4.119 26 N -0.230 5.230 27 C -0.123 4.123 28 C -0.120 4.120 29 H 0.112 0.888 30 H 0.122 0.878 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.103 0.897 34 H 0.093 0.907 35 H 0.112 0.888 36 H 0.237 0.763 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.103 0.897 40 H 0.106 0.894 41 H 0.098 0.902 42 H 0.099 0.901 43 H 0.100 0.900 44 H 0.100 0.900 45 H 0.107 0.893 46 H 0.099 0.901 47 H 0.098 0.902 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 17.105 -6.755 -6.938 19.655 hybrid contribution 0.227 -1.826 -0.457 1.896 sum 17.332 -8.581 -7.394 20.705 Atomic orbital electron populations 1.70445 1.08184 1.34230 1.29550 1.26918 0.95682 1.04120 0.91401 0.83709 0.75733 0.74178 0.77937 1.19912 1.20278 1.20076 1.20436 1.02568 0.93970 1.37566 0.90997 1.17393 0.90192 0.91834 0.89236 1.21129 1.03667 0.96938 1.01747 1.20598 0.98304 0.93261 0.98418 1.20256 1.05069 0.95779 1.06102 1.20354 0.96188 0.95799 0.96518 1.19026 1.02462 0.93545 1.03269 1.20223 0.90016 1.02400 0.98252 1.21176 0.85900 0.74994 0.87798 1.90677 1.87325 1.47383 1.14722 1.45973 1.04808 1.77134 1.10970 1.21282 0.82080 1.01913 0.93821 1.22744 0.95078 0.94355 0.95948 0.88641 1.22900 0.94181 0.92510 1.01675 1.63901 1.44398 1.02513 1.12807 1.22911 0.97619 1.03411 0.88066 1.22906 0.90526 1.03551 0.94896 1.63838 1.44199 1.02118 1.12804 1.22949 0.98025 0.93693 0.97615 1.22908 0.93133 0.94835 1.01104 0.88770 0.87836 0.89429 0.89506 0.89663 0.90736 0.88772 0.76328 0.91207 0.92093 0.89674 0.89443 0.90203 0.90136 0.90030 0.90006 0.89316 0.90126 0.90174 0.89978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.50 12.34 55.55 0.69 -20.81 16 2 C 0.04 1.04 4.94 -17.34 -0.09 0.95 16 3 Si 1.06 22.21 30.00 -169.99 -5.10 17.11 16 4 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 5 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 6 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 7 C -0.52 -13.82 8.07 -37.74 -0.30 -14.13 16 8 H 0.07 1.89 6.74 -52.49 -0.35 1.54 16 9 C 0.12 3.14 5.28 -106.83 -0.56 2.57 16 10 C -0.22 -5.78 7.95 -38.87 -0.31 -6.09 16 11 C -0.09 -2.14 10.02 -39.66 -0.40 -2.54 16 12 C -0.25 -5.94 10.05 -39.29 -0.39 -6.33 16 13 C -0.07 -1.64 9.66 -39.66 -0.38 -2.03 16 14 C -0.18 -4.43 4.43 -103.91 -0.46 -4.89 16 15 C -0.07 -1.39 5.18 -29.04 -0.15 -1.54 16 16 C 0.51 10.18 7.46 -10.99 -0.08 10.10 16 17 O -0.53 -12.86 16.03 5.55 0.09 -12.77 16 18 N -0.73 -10.88 5.39 -60.29 -0.33 -11.20 16 19 C 0.13 1.73 4.32 -4.04 -0.02 1.71 16 20 C 0.03 0.28 2.59 -67.39 -0.17 0.11 16 21 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 22 C 0.02 0.16 5.80 -3.50 -0.02 0.14 16 23 N -0.52 -4.57 5.44 -233.19 -1.27 -5.84 16 24 C 0.01 0.07 6.13 -3.49 -0.02 0.05 16 25 C 0.01 0.08 6.13 -3.49 -0.02 0.06 16 26 N -0.51 -4.72 4.69 -225.24 -1.06 -5.78 16 27 C 0.01 0.06 5.75 -3.49 -0.02 0.04 16 28 C 0.01 0.09 6.13 -3.49 -0.02 0.07 16 29 H 0.30 8.22 6.70 -40.82 -0.27 7.95 16 30 H 0.10 2.85 6.54 -52.48 -0.34 2.50 16 31 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 32 H 0.09 1.81 8.06 -52.49 -0.42 1.38 16 33 H 0.09 1.76 8.06 -52.49 -0.42 1.33 16 34 H 0.07 1.27 8.05 -51.93 -0.42 0.85 16 35 H 0.09 1.88 7.06 -51.93 -0.37 1.51 16 36 H 0.40 5.16 8.14 -40.82 -0.33 4.83 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.06 0.84 6.60 -51.93 -0.34 0.50 16 39 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.09 0.82 7.61 -51.93 -0.40 0.43 16 41 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.09 0.99 6.29 -51.93 -0.33 0.66 16 46 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 374.46 15.07 5.64 5.64 Total: -1.00 -31.23 374.46 -12.21 -43.43 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: -7.44 Total: 11.94 kcal Atomic # 6 Polarization: -18.30 SS G_CDS: -3.43 Total: -21.73 kcal Atomic # 7 Polarization: -41.67 SS G_CDS: -1.96 Total: -43.63 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: 0.09 Total: -12.77 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.10 Total: 17.11 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.23 -12.21 -43.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776984724.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.607 kcal (2) G-P(sol) polarization free energy of solvation -31.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds