Wall clock time and date at job start Tue Mar 31 2020 05:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86803 * 120.00090 * 2 1 4 4 H 1.48494 * 109.47181 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47049 * 299.99915 * 3 2 1 6 6 H 1.48501 * 109.47060 * 59.99665 * 3 2 1 7 7 C 1.39943 * 120.00238 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00226 * 163.61505 * 7 2 1 9 9 C 1.41398 * 119.99663 * 343.62453 * 7 2 1 10 10 C 1.40732 * 120.24710 * 334.05924 * 9 7 2 11 11 C 1.37591 * 119.74717 * 180.02562 * 10 9 7 12 12 C 1.38662 * 120.24862 * 359.97438 * 11 10 9 13 13 C 1.38608 * 120.49831 * 359.72462 * 12 11 10 14 14 C 1.37633 * 120.25137 * 0.55696 * 13 12 11 15 15 C 1.50696 * 120.12966 * 179.72245 * 14 13 12 16 16 C 1.50702 * 109.46979 * 264.72587 * 15 14 13 17 17 O 1.21275 * 120.00082 * 359.97438 * 16 15 14 18 18 N 1.34780 * 120.00142 * 180.02562 * 16 15 14 19 19 C 1.46497 * 120.00231 * 179.97438 * 18 16 15 20 20 C 1.53003 * 109.46992 * 179.97438 * 19 18 16 21 21 H 1.09002 * 109.58231 * 294.99662 * 20 19 18 22 22 C 1.53237 * 109.58110 * 174.72951 * 20 19 18 23 23 N 1.47276 * 108.80169 * 240.21174 * 22 20 19 24 24 C 1.47315 * 110.15610 * 299.18243 * 23 22 20 25 25 C 1.53486 * 108.83735 * 60.74397 * 24 23 22 26 26 N 1.47273 * 109.58151 * 55.27492 * 20 19 18 27 27 C 1.47576 * 110.01017 * 59.12178 * 26 20 19 28 28 C 1.47321 * 110.15722 * 60.80599 * 23 22 20 29 29 H 0.96999 * 119.99831 * 359.97438 * 1 2 3 30 30 H 1.07995 * 120.12691 * 0.02562 * 10 9 7 31 31 H 1.08001 * 119.87916 * 179.97438 * 11 10 9 32 32 H 1.08001 * 119.74860 * 179.97438 * 12 11 10 33 33 H 1.08008 * 119.87463 * 180.30355 * 13 12 11 34 34 H 1.09000 * 109.47294 * 144.72859 * 15 14 13 35 35 H 1.09002 * 109.47414 * 24.72242 * 15 14 13 36 36 H 0.97007 * 119.99491 * 359.97438 * 18 16 15 37 37 H 1.09003 * 109.47230 * 299.99752 * 19 18 16 38 38 H 1.09000 * 109.46820 * 59.99869 * 19 18 16 39 39 H 1.09003 * 109.57762 * 0.02562 * 22 20 19 40 40 H 1.08991 * 109.58326 * 120.41374 * 22 20 19 41 41 H 1.08999 * 109.57853 * 180.60497 * 24 23 22 42 42 H 1.09001 * 109.58110 * 301.01448 * 24 23 22 43 43 H 1.09003 * 109.53838 * 240.29785 * 25 24 23 44 44 H 1.08992 * 109.76941 * 119.93751 * 25 24 23 45 45 H 1.09008 * 109.54267 * 300.89000 * 27 26 20 46 46 H 1.08996 * 109.66052 * 180.60293 * 27 26 20 47 47 H 1.09003 * 109.58277 * 58.98103 * 28 23 22 48 48 H 1.08994 * 109.57754 * 179.39071 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7022 1.3464 0.0006 5 1 1.8835 2.3964 -1.2125 6 1 1.8835 2.3965 1.2125 7 6 2.0080 -1.2119 0.0005 8 1 3.0551 -1.2310 -0.2633 9 6 1.3440 -2.4114 0.3463 10 6 0.2134 -2.3799 1.1837 11 6 -0.4245 -3.5534 1.5141 12 6 0.0423 -4.7639 1.0247 13 6 1.1512 -4.8063 0.1942 14 6 1.8085 -3.6455 -0.1447 15 6 3.0176 -3.6954 -1.0428 16 6 4.2675 -3.7246 -0.2014 17 8 4.1846 -3.7061 1.0084 18 7 5.4775 -3.7702 -0.7933 19 6 6.6925 -3.7979 0.0246 20 6 7.9201 -3.8488 -0.8873 21 1 7.9250 -4.7875 -1.4412 22 6 9.1933 -3.7453 -0.0408 23 7 9.9446 -2.5493 -0.4578 24 6 10.3255 -2.6582 -1.8767 25 6 9.0508 -2.7637 -2.7253 26 7 7.8811 -2.7188 -1.8310 27 6 7.8595 -1.4427 -1.0901 28 6 9.1322 -1.3391 -0.2436 29 1 -0.4850 0.8401 0.0004 30 1 -0.1522 -1.4381 1.5656 31 1 -1.2921 -3.5316 2.1569 32 1 -0.4643 -5.6802 1.2895 33 1 1.5033 -5.7543 -0.1851 34 1 3.0312 -2.8135 -1.6832 35 1 2.9745 -4.5925 -1.6606 36 1 5.5437 -3.7846 -1.7610 37 1 6.7353 -2.9009 0.6424 38 1 6.6793 -4.6799 0.6650 39 1 8.9257 -3.6602 1.0125 40 1 9.8064 -4.6334 -0.1931 41 1 10.8898 -1.7738 -2.1724 42 1 10.9355 -3.5494 -2.0238 43 1 9.0552 -3.7054 -3.2742 44 1 9.0057 -1.9316 -3.4278 45 1 6.9849 -1.4132 -0.4400 46 1 7.8198 -0.6109 -1.7935 47 1 8.8648 -1.2604 0.8101 48 1 9.7008 -0.4594 -0.5450 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776984725.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:41 Heat of formation + Delta-G solvation = 9.148728 kcal Electronic energy + Delta-G solvation = -28746.187041 eV Core-core repulsion = 24993.730650 eV Total energy + Delta-G solvation = -3752.456391 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.184 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.42872 -39.01668 -37.26414 -34.84774 -33.56378 -33.09243 -31.94401 -31.36948 -31.25627 -29.39435 -27.38592 -25.80732 -24.81570 -24.07052 -23.53057 -22.17587 -20.87553 -20.38604 -19.26185 -18.25809 -17.36731 -17.17559 -16.96810 -16.44280 -15.68043 -15.49327 -15.15912 -14.85268 -14.38050 -13.97707 -13.55624 -13.43288 -13.35824 -13.30275 -13.17774 -13.04143 -12.65016 -12.57614 -12.54554 -12.36155 -11.96062 -11.66161 -11.51770 -11.11694 -10.95795 -10.93702 -10.92777 -10.82422 -10.70551 -10.61193 -10.34352 -10.14197 -9.42291 -9.31237 -9.12442 -9.07449 -8.57974 -8.01962 -7.25262 -7.22584 -6.68497 -4.28251 2.82326 3.02905 3.09870 3.14837 3.31008 3.34022 3.45972 3.72476 3.88814 3.97559 4.31586 4.41348 4.56336 4.61928 4.71987 4.86686 4.99926 5.14683 5.17987 5.22034 5.28511 5.43527 5.46694 5.54235 5.56613 5.66190 5.68511 5.81868 5.85248 5.91461 6.11429 6.22572 6.31594 6.34650 6.36618 6.51375 6.56875 6.79383 6.83533 6.86587 6.94467 7.14542 7.35580 7.48340 7.70672 7.97330 8.08282 8.16166 8.19156 8.37737 8.71105 8.97431 8.98896 9.07772 10.25902 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.013326 B = 0.003660 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.612743 B = 7649.382573 C = 9163.435993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.077 3.923 3 Si 0.902 3.098 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.273 1.273 7 C -0.455 4.455 8 H 0.074 0.926 9 C 0.129 3.871 10 C -0.160 4.160 11 C -0.108 4.108 12 C -0.240 4.240 13 C -0.083 4.083 14 C -0.178 4.178 15 C -0.070 4.070 16 C 0.514 3.486 17 O -0.527 6.527 18 N -0.735 5.735 19 C 0.134 3.866 20 C 0.029 3.971 21 H 0.093 0.907 22 C 0.018 3.982 23 N -0.515 5.515 24 C 0.010 3.990 25 C 0.011 3.989 26 N -0.506 5.506 27 C 0.005 3.995 28 C 0.010 3.990 29 H 0.278 0.722 30 H 0.116 0.884 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.074 0.926 36 H 0.402 0.598 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.082 0.918 45 H 0.091 0.909 46 H 0.081 0.919 47 H 0.082 0.918 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.925 -3.387 -6.099 19.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.140 4.140 3 Si 0.726 3.274 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.198 1.198 7 C -0.485 4.485 8 H 0.092 0.908 9 C 0.126 3.874 10 C -0.179 4.179 11 C -0.126 4.126 12 C -0.259 4.259 13 C -0.101 4.101 14 C -0.180 4.180 15 C -0.110 4.110 16 C 0.301 3.699 17 O -0.401 6.401 18 N -0.389 5.389 19 C 0.009 3.991 20 C -0.081 4.081 21 H 0.112 0.888 22 C -0.113 4.113 23 N -0.236 5.236 24 C -0.120 4.120 25 C -0.119 4.119 26 N -0.228 5.228 27 C -0.125 4.125 28 C -0.119 4.119 29 H 0.089 0.911 30 H 0.134 0.866 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.113 0.887 35 H 0.092 0.908 36 H 0.236 0.764 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.105 0.895 40 H 0.102 0.898 41 H 0.098 0.902 42 H 0.098 0.902 43 H 0.099 0.901 44 H 0.100 0.900 45 H 0.110 0.890 46 H 0.100 0.900 47 H 0.101 0.899 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 17.654 -3.204 -5.212 18.684 hybrid contribution 0.397 0.823 -0.471 1.028 sum 18.050 -2.380 -5.683 19.073 Atomic orbital electron populations 1.69833 1.07449 1.28850 1.36079 1.25868 0.94669 1.01066 0.92410 0.86368 0.81052 0.81451 0.78479 1.18559 1.20080 1.19787 1.19495 0.97209 0.90948 1.40823 0.90759 1.17340 0.90740 0.91296 0.87992 1.21286 0.99070 0.96643 1.00919 1.20667 0.98652 0.93483 0.99831 1.20301 1.01688 0.96125 1.07791 1.20300 0.95992 0.95558 0.98234 1.19065 0.99168 0.94011 1.05724 1.20245 0.90615 1.02693 0.97426 1.21211 0.84436 0.74874 0.89361 1.90671 1.86913 1.47681 1.14830 1.45987 1.04917 1.77781 1.10265 1.21279 0.83038 1.01969 0.92844 1.22734 0.95354 0.95602 0.94439 0.88848 1.22898 0.93839 0.93987 1.00533 1.63905 1.38944 1.02494 1.18288 1.22958 0.97599 1.03286 0.88161 1.22959 0.89434 1.03576 0.95933 1.63972 1.38498 1.02183 1.18124 1.23014 0.99016 0.92264 0.98157 1.22909 0.94218 0.93349 1.01460 0.91103 0.86589 0.89640 0.89721 0.89807 0.88653 0.90786 0.76353 0.91906 0.91435 0.89477 0.89803 0.90204 0.90230 0.90137 0.89966 0.89046 0.90009 0.89907 0.90146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.82 10.97 55.55 0.61 -20.21 16 2 C 0.08 1.95 5.16 -17.34 -0.09 1.86 16 3 Si 0.90 19.07 29.59 -169.99 -5.03 14.04 16 4 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 5 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 6 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 7 C -0.45 -12.13 8.14 -37.74 -0.31 -12.44 16 8 H 0.07 1.94 6.68 -52.49 -0.35 1.59 16 9 C 0.13 3.50 5.56 -106.82 -0.59 2.90 16 10 C -0.16 -4.35 8.68 -38.88 -0.34 -4.69 16 11 C -0.11 -2.69 10.02 -39.66 -0.40 -3.08 16 12 C -0.24 -5.71 10.05 -39.29 -0.39 -6.10 16 13 C -0.08 -1.95 9.66 -39.67 -0.38 -2.33 16 14 C -0.18 -4.36 4.43 -103.91 -0.46 -4.82 16 15 C -0.07 -1.40 5.18 -29.04 -0.15 -1.55 16 16 C 0.51 10.14 7.46 -10.98 -0.08 10.05 16 17 O -0.53 -12.77 16.03 5.56 0.09 -12.68 16 18 N -0.73 -10.89 5.39 -60.29 -0.33 -11.21 16 19 C 0.13 1.73 4.33 -4.04 -0.02 1.71 16 20 C 0.03 0.29 2.58 -67.38 -0.17 0.11 16 21 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 22 C 0.02 0.16 5.80 -3.50 -0.02 0.14 16 23 N -0.52 -4.84 5.44 -233.00 -1.27 -6.11 16 24 C 0.01 0.08 6.14 -3.34 -0.02 0.06 16 25 C 0.01 0.09 6.15 -3.34 -0.02 0.07 16 26 N -0.51 -5.08 4.72 -224.83 -1.06 -6.15 16 27 C 0.01 0.05 5.75 -3.35 -0.02 0.04 16 28 C 0.01 0.10 6.14 -3.49 -0.02 0.08 16 29 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 30 H 0.12 3.24 6.22 -52.49 -0.33 2.91 16 31 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 32 H 0.08 1.78 8.06 -52.49 -0.42 1.36 16 33 H 0.08 1.74 8.06 -52.48 -0.42 1.32 16 34 H 0.10 1.90 7.06 -51.93 -0.37 1.53 16 35 H 0.07 1.25 8.05 -51.93 -0.42 0.84 16 36 H 0.40 5.16 8.15 -40.82 -0.33 4.82 16 37 H 0.06 0.92 6.58 -51.93 -0.34 0.58 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.09 0.83 7.61 -51.93 -0.40 0.44 16 40 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.09 1.20 6.28 -51.92 -0.33 0.88 16 46 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 47 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 48 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 375.22 15.07 5.65 5.65 Total: -1.00 -31.09 375.22 -12.31 -43.40 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: -7.49 Total: 11.26 kcal Atomic # 6 Polarization: -14.50 SS G_CDS: -3.49 Total: -17.99 kcal Atomic # 7 Polarization: -41.63 SS G_CDS: -2.05 Total: -43.68 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: 0.09 Total: -12.68 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.03 Total: 14.04 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.09 -12.31 -43.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776984725.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.553 kcal (2) G-P(sol) polarization free energy of solvation -31.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds