Wall clock time and date at job start Tue Mar 31 2020 06:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34885 * 125.65067 * 2 1 4 4 C 1.35885 * 109.08766 * 179.97438 * 3 2 1 5 5 S 1.76200 * 126.04014 * 179.97438 * 4 3 2 6 6 N 1.65608 * 107.21501 * 90.00764 * 5 4 3 7 7 O 1.42096 * 106.40418 * 203.54224 * 5 4 3 8 8 O 1.42092 * 106.40321 * 336.46757 * 5 4 3 9 9 C 1.39380 * 107.92236 * 0.02562 * 4 3 2 10 10 C 1.37848 * 125.64966 * 179.70051 * 2 1 3 11 11 C 1.41525 * 126.31433 * 0.02562 * 10 2 1 12 12 O 1.21612 * 120.00093 * 0.02562 * 11 10 2 13 13 C 1.49062 * 119.99684 * 180.02562 * 11 10 2 14 14 O 1.21293 * 120.00170 * 359.97438 * 13 11 10 15 15 O 1.34576 * 119.99707 * 180.02562 * 13 11 10 16 16 C 1.45203 * 117.00030 * 180.02562 * 15 13 11 17 17 C 1.53000 * 109.47194 * 179.97438 * 16 15 13 18 18 C 1.50697 * 109.47148 * 179.97438 * 17 16 15 19 19 H 1.07998 * 119.99836 * 359.97438 * 18 17 16 20 20 C 1.37879 * 120.00010 * 180.02562 * 18 17 16 21 21 N 1.31510 * 120.00085 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99809 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47179 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.46762 * 119.99719 * 22 20 18 25 25 H 1.48497 * 109.47015 * 239.99575 * 22 20 18 26 26 H 1.09002 * 109.47391 * 90.01921 * 1 2 3 27 27 H 1.09001 * 109.46813 * 330.01977 * 1 2 3 28 28 H 1.09004 * 109.47041 * 210.02104 * 1 2 3 29 29 H 1.08006 * 125.45530 * 359.96989 * 3 2 1 30 30 H 0.96999 * 119.99480 * 359.97438 * 6 5 4 31 31 H 0.96991 * 119.99948 * 180.02562 * 6 5 4 32 32 H 1.07999 * 126.53942 * 180.02562 * 9 4 3 33 33 H 1.09000 * 109.46304 * 299.99324 * 16 15 13 34 34 H 1.08999 * 109.47379 * 59.99557 * 16 15 13 35 35 H 1.08997 * 109.46989 * 299.99825 * 17 16 15 36 36 H 1.08999 * 109.47080 * 59.99666 * 17 16 15 37 37 H 0.96995 * 120.00386 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2512 1.0961 0.0000 4 6 3.5536 0.7087 0.0006 5 16 4.9534 1.7788 0.0002 6 7 5.3426 2.0774 1.5819 7 8 6.0313 1.0294 -0.5435 8 8 4.5134 3.0150 -0.5450 9 6 3.5867 -0.6847 0.0004 10 6 2.2684 -1.1201 0.0059 11 6 1.8302 -2.4658 0.0124 12 8 0.6405 -2.7179 0.0127 13 6 2.8270 -3.5741 0.0188 14 8 4.0136 -3.3227 0.0180 15 8 2.4103 -4.8537 0.0245 16 6 3.4364 -5.8811 0.0312 17 6 2.7762 -7.2613 0.0376 18 6 3.8411 -8.3275 0.0439 19 1 4.8845 -8.0486 0.0429 20 6 3.4835 -9.6591 0.0498 21 7 2.2130 -9.9987 0.0505 22 14 4.8035 -10.9807 0.0569 23 1 6.1439 -10.3416 0.0543 24 1 4.6572 -11.8200 1.2733 25 1 4.6588 -11.8313 -1.1517 26 1 -0.3634 -0.0003 -1.0277 27 1 -0.3633 0.8902 0.5135 28 1 -0.3633 -0.8898 0.5142 29 1 1.9014 2.1179 -0.0005 30 1 4.8188 1.6779 2.2939 31 1 6.0938 2.6523 1.7964 32 1 4.4694 -1.3070 0.0011 33 1 4.0580 -5.7794 -0.8585 34 1 4.0554 -5.7707 0.9215 35 1 2.1548 -7.3626 0.9274 36 1 2.1569 -7.3720 -0.8525 37 1 1.9613 -10.9354 0.0550 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000803860369.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:32 Heat of formation + Delta-G solvation = -139.731849 kcal Electronic energy + Delta-G solvation = -25211.900085 eV Core-core repulsion = 21083.213753 eV Total energy + Delta-G solvation = -4128.686331 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.081 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.27478 -40.34420 -38.74941 -37.27168 -36.49431 -35.98834 -33.72685 -33.42862 -33.40179 -30.79877 -30.39496 -27.40195 -26.54544 -24.80168 -22.71125 -21.92691 -20.94149 -20.14056 -19.45611 -18.23668 -17.75143 -17.62709 -17.07890 -16.66778 -16.63181 -16.15649 -15.93543 -15.71507 -15.42567 -15.08555 -14.59144 -14.40405 -14.33342 -13.34295 -13.20392 -13.18471 -13.01807 -12.95125 -12.40282 -12.37422 -12.26536 -12.13867 -11.63205 -11.43905 -11.36605 -11.10295 -10.85485 -10.76234 -10.70728 -10.12133 -9.86131 -9.78882 -9.66127 -9.32594 -9.04095 -8.48497 -6.13795 -4.18839 0.14722 0.23483 1.32069 1.84484 1.85665 2.67077 2.99202 3.05858 3.25982 3.33487 3.38132 3.47798 3.98885 4.18713 4.31240 4.39622 4.46574 4.63541 4.69782 4.85391 5.00731 5.11811 5.22972 5.40953 5.70012 5.85518 5.89731 5.96513 6.14415 6.38155 6.50996 6.64626 6.71720 6.73678 7.47139 7.55698 7.73643 7.90564 8.17568 8.86902 9.45986 10.97694 Molecular weight = 330.08amu Principal moments of inertia in cm(-1) A = 0.019284 B = 0.002447 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.633116 B =11441.076383 C =12693.823998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.393 5.393 3 C 0.159 3.841 4 C -0.768 4.768 5 S 2.732 3.268 6 N -1.252 6.252 7 O -0.959 6.959 8 O -0.972 6.972 9 C 0.015 3.985 10 C -0.101 4.101 11 C 0.438 3.562 12 O -0.414 6.414 13 C 0.437 3.563 14 O -0.478 6.478 15 O -0.328 6.328 16 C 0.070 3.930 17 C 0.024 3.976 18 C -0.527 4.527 19 H 0.061 0.939 20 C 0.061 3.939 21 N -0.889 5.889 22 Si 0.901 3.099 23 H -0.271 1.271 24 H -0.282 1.282 25 H -0.282 1.282 26 H 0.090 0.910 27 H 0.095 0.905 28 H 0.110 0.890 29 H 0.195 0.805 30 H 0.416 0.584 31 H 0.419 0.581 32 H 0.188 0.812 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.030 0.970 36 H 0.030 0.970 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.556 27.893 3.798 28.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.062 5.062 3 C 0.011 3.989 4 C -0.862 4.862 5 S 2.819 3.181 6 N -0.926 5.926 7 O -0.949 6.949 8 O -0.962 6.962 9 C -0.010 4.010 10 C -0.208 4.208 11 C 0.315 3.685 12 O -0.288 6.288 13 C 0.276 3.724 14 O -0.367 6.367 15 O -0.243 6.243 16 C -0.002 4.002 17 C -0.013 4.013 18 C -0.565 4.565 19 H 0.079 0.921 20 C -0.142 4.142 21 N -0.527 5.527 22 Si 0.728 3.272 23 H -0.195 1.195 24 H -0.208 1.208 25 H -0.208 1.208 26 H 0.108 0.892 27 H 0.113 0.887 28 H 0.128 0.872 29 H 0.212 0.788 30 H 0.243 0.757 31 H 0.249 0.751 32 H 0.205 0.795 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.048 0.952 36 H 0.048 0.952 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.997 27.770 2.840 27.986 hybrid contribution 0.231 -1.156 0.689 1.365 sum -1.766 26.614 3.528 26.905 Atomic orbital electron populations 1.22616 0.74637 1.06355 1.05292 1.44244 1.07766 1.05090 1.49092 1.22015 0.88648 0.92539 0.95659 1.30836 1.14440 1.09671 1.31222 1.00590 0.72721 0.72888 0.71921 1.53092 1.46128 1.66587 1.26830 1.93622 1.52312 1.72511 1.76419 1.93581 1.82529 1.43391 1.76670 1.22093 0.96678 0.92061 0.90144 1.19271 0.91054 0.87765 1.22743 1.19141 0.88225 0.86386 0.74758 1.90672 1.17843 1.86195 1.34085 1.23339 0.88461 0.85494 0.75109 1.90730 1.17959 1.84858 1.43142 1.86693 1.42910 1.13935 1.80743 1.23916 0.88777 0.85903 1.01579 1.19207 0.97008 0.85977 0.99157 1.20990 0.92698 0.90454 1.52380 0.92052 1.24993 0.95633 0.98760 0.94787 1.69981 1.15558 1.17565 1.49630 0.86394 0.81688 0.81392 0.77718 1.19515 1.20818 1.20812 0.89195 0.88657 0.87173 0.78791 0.75679 0.75133 0.79482 0.91544 0.91578 0.95173 0.95164 0.92691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.30 10.54 59.85 0.63 0.93 16 2 N -0.39 -3.41 3.15 -121.67 -0.38 -3.80 16 3 C 0.16 1.13 11.10 -17.05 -0.19 0.94 16 4 C -0.77 -6.88 6.14 -40.00 -0.25 -7.13 16 5 S 2.73 23.29 6.43 -107.50 -0.69 22.60 16 6 N -1.25 -5.80 9.55 60.35 0.58 -5.22 16 7 O -0.96 -12.31 17.87 -57.17 -1.02 -13.33 16 8 O -0.97 -10.38 17.85 -57.17 -1.02 -11.40 16 9 C 0.01 0.17 9.73 -38.94 -0.38 -0.21 16 10 C -0.10 -1.21 6.72 -83.69 -0.56 -1.77 16 11 C 0.44 6.33 7.00 -33.84 -0.24 6.09 16 12 O -0.41 -6.34 15.13 -8.10 -0.12 -6.46 16 13 C 0.44 7.48 7.99 35.22 0.28 7.76 16 14 O -0.48 -8.38 13.82 -19.10 -0.26 -8.65 16 15 O -0.33 -6.59 10.08 -45.23 -0.46 -7.05 16 16 C 0.07 1.51 5.41 37.16 0.20 1.72 16 17 C 0.02 0.61 5.35 -27.88 -0.15 0.46 16 18 C -0.53 -14.62 9.11 -34.44 -0.31 -14.93 16 19 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 20 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 21 N -0.89 -26.25 13.29 55.43 0.74 -25.51 16 22 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 23 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.11 0.81 6.25 -51.93 -0.32 0.49 16 29 H 0.20 0.63 8.06 -52.48 -0.42 0.20 16 30 H 0.42 1.08 8.92 -34.47 -0.31 0.77 16 31 H 0.42 1.29 8.96 -34.47 -0.31 0.98 16 32 H 0.19 2.36 6.08 -52.49 -0.32 2.04 16 33 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 34 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 35 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 345.71 15.07 5.21 5.21 Total: -1.00 -37.62 345.71 -7.28 -44.90 By element: Atomic # 1 Polarization: 0.78 SS G_CDS: -3.76 Total: -2.98 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: -1.06 Total: -4.53 kcal Atomic # 7 Polarization: -35.46 SS G_CDS: 0.93 Total: -34.53 kcal Atomic # 8 Polarization: -43.99 SS G_CDS: -2.88 Total: -46.88 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: 23.29 SS G_CDS: -0.69 Total: 22.60 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -37.62 -7.28 -44.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000803860369.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.832 kcal (2) G-P(sol) polarization free energy of solvation -37.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds