Wall clock time and date at job start Tue Mar 31 2020 05:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86796 * 119.99935 * 2 1 4 4 H 1.48503 * 109.47008 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47030 * 299.99620 * 3 2 1 6 6 H 1.48498 * 109.47501 * 59.99761 * 3 2 1 7 7 C 1.38949 * 119.99591 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99672 * 179.97438 * 7 2 1 9 9 N 1.37098 * 120.00455 * 0.02562 * 7 2 1 10 10 C 1.34776 * 120.00152 * 179.97438 * 9 7 2 11 11 O 1.21288 * 120.00003 * 0.02562 * 10 9 7 12 12 C 1.50699 * 119.99779 * 179.97438 * 10 9 7 13 13 N 1.46505 * 109.47036 * 180.02562 * 12 10 9 14 14 C 1.34775 * 119.99875 * 180.02562 * 13 12 10 15 15 O 1.21276 * 120.00225 * 359.97438 * 14 13 12 16 16 C 1.50703 * 119.99532 * 180.02562 * 14 13 12 17 17 H 1.08998 * 109.46921 * 304.99477 * 16 14 13 18 18 O 1.42903 * 109.46760 * 184.99856 * 16 14 13 19 19 C 1.50693 * 109.47187 * 64.99702 * 16 14 13 20 20 C 1.38230 * 119.99745 * 94.97720 * 19 16 14 21 21 C 1.38210 * 120.03492 * 180.02562 * 20 19 16 22 22 C 1.38385 * 120.03876 * 0.02562 * 21 20 19 23 23 Cl 1.73607 * 119.99821 * 179.97438 * 22 21 20 24 24 C 1.38283 * 119.99953 * 359.97438 * 22 21 20 25 25 C 1.38447 * 120.00204 * 274.99427 * 19 16 14 26 26 F 1.35102 * 120.01663 * 0.02562 * 25 19 16 27 27 H 0.97000 * 119.99662 * 0.02562 * 1 2 3 28 28 H 0.96999 * 119.99528 * 359.97438 * 9 7 2 29 29 H 1.09006 * 109.46927 * 60.00744 * 12 10 9 30 30 H 1.08995 * 109.47612 * 300.00391 * 12 10 9 31 31 H 0.97005 * 119.99598 * 0.02562 * 13 12 10 32 32 H 0.96703 * 113.99789 * 299.99679 * 18 16 14 33 33 H 1.07993 * 119.98604 * 0.04180 * 20 19 16 34 34 H 1.08003 * 119.97444 * 180.27414 * 21 20 19 35 35 H 1.08002 * 120.02204 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8894 2.3963 -1.2125 6 1 1.8894 2.3965 1.2124 7 6 2.0088 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0001 9 7 1.3233 -2.3907 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2101 -3.5579 0.0010 12 6 1.2436 -4.8629 0.0011 13 7 2.1956 -5.9765 0.0016 14 6 1.7463 -7.2472 0.0017 15 8 0.5539 -7.4688 0.0018 16 6 2.7256 -8.3926 0.0028 17 1 3.4103 -8.2860 -0.8386 18 8 2.0150 -9.6269 -0.1148 19 6 3.5075 -8.3838 1.2910 20 6 3.0967 -9.1659 2.3541 21 6 3.8129 -9.1580 3.5361 22 6 4.9417 -8.3667 3.6568 23 17 5.8402 -8.3571 5.1423 24 6 5.3541 -7.5837 2.5942 25 6 4.6370 -7.5921 1.4098 26 9 5.0383 -6.8269 0.3712 27 1 -0.4850 0.8401 -0.0004 28 1 0.3533 -2.3906 0.0005 29 1 0.6167 -4.9209 -0.8887 30 1 0.6172 -4.9205 0.8913 31 1 3.1493 -5.7993 0.0019 32 1 1.3861 -9.7884 0.6018 33 1 2.2158 -9.7837 2.2610 34 1 3.4936 -9.7729 4.3646 35 1 6.2348 -6.9657 2.6882 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813611429.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:47 Heat of formation + Delta-G solvation = -150.114061 kcal Electronic energy + Delta-G solvation = -25354.720644 eV Core-core repulsion = 21100.080094 eV Total energy + Delta-G solvation = -4254.640549 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 330.061 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -49.31600 -40.53538 -39.24299 -38.26928 -37.08542 -36.40218 -34.57070 -33.80760 -31.91054 -31.40518 -31.17754 -28.56091 -26.54493 -24.45390 -23.39298 -22.58756 -20.54024 -19.72451 -18.62379 -18.36155 -17.86344 -17.29014 -17.16603 -16.05572 -15.97736 -15.66347 -15.47641 -15.23816 -14.81544 -14.55635 -14.43586 -14.12353 -13.90266 -13.67705 -13.63221 -13.43339 -13.02057 -12.30302 -12.25577 -12.03615 -11.93184 -11.76187 -11.66155 -11.41064 -11.18847 -11.16141 -10.43005 -10.35306 -9.93091 -9.67927 -9.39572 -9.01418 -8.93341 -8.67608 -8.13549 -6.54651 -3.96640 0.43629 0.65690 1.60698 2.47123 2.89224 3.08116 3.13973 3.21330 3.28406 3.69218 3.76061 3.96601 4.04318 4.09573 4.19851 4.49137 4.63835 4.74683 4.81120 5.02759 5.06692 5.13701 5.37555 5.45241 5.64936 5.70556 5.79613 5.86758 6.00314 6.21589 6.49645 7.08927 7.43509 7.59166 7.88175 8.17807 8.41448 9.01478 9.35241 9.82962 10.62244 Molecular weight = 330.06amu Principal moments of inertia in cm(-1) A = 0.012846 B = 0.003159 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.148223 B = 8861.685158 C =10286.207282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.026 3.974 3 Si 0.933 3.067 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.305 4.305 8 H 0.106 0.894 9 N -0.548 5.548 10 C 0.426 3.574 11 O -0.594 6.594 12 C 0.106 3.894 13 N -0.700 5.700 14 C 0.487 3.513 15 O -0.535 6.535 16 C 0.139 3.861 17 H 0.140 0.860 18 O -0.524 6.524 19 C -0.152 4.152 20 C -0.064 4.064 21 C -0.116 4.116 22 C -0.004 4.004 23 Cl -0.054 7.054 24 C -0.140 4.140 25 C 0.130 3.870 26 F -0.118 7.118 27 H 0.274 0.726 28 H 0.396 0.604 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.413 0.587 32 H 0.383 0.617 33 H 0.146 0.854 34 H 0.145 0.855 35 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.690 -18.897 6.716 21.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.177 4.177 3 Si 0.759 3.241 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.434 4.434 8 H 0.124 0.876 9 N -0.182 5.182 10 C 0.212 3.788 11 O -0.480 6.480 12 C -0.022 4.022 13 N -0.356 5.356 14 C 0.271 3.729 15 O -0.413 6.413 16 C 0.076 3.924 17 H 0.157 0.843 18 O -0.329 6.329 19 C -0.154 4.154 20 C -0.082 4.082 21 C -0.135 4.135 22 C -0.031 4.031 23 Cl -0.025 7.025 24 C -0.159 4.159 25 C 0.110 3.890 26 F -0.096 7.096 27 H 0.084 0.916 28 H 0.230 0.770 29 H 0.105 0.895 30 H 0.103 0.897 31 H 0.252 0.748 32 H 0.233 0.767 33 H 0.163 0.837 34 H 0.162 0.838 35 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 6.956 -18.883 6.270 21.078 hybrid contribution 0.054 1.320 0.468 1.401 sum 7.010 -17.563 6.738 20.075 Atomic orbital electron populations 1.69623 1.06027 1.28466 1.49300 1.25332 0.95671 0.99959 0.96736 0.85754 0.79707 0.80768 0.77855 1.19098 1.20572 1.20590 1.19790 0.93515 0.81936 1.48171 0.87573 1.41793 1.09472 1.04451 1.62533 1.19695 0.88332 0.84935 0.85886 1.90514 1.13582 1.86715 1.57231 1.21033 0.91856 0.85827 1.03459 1.45861 1.12216 1.04623 1.72922 1.21105 0.90037 0.84441 0.77296 1.90716 1.15973 1.84534 1.50041 1.20535 0.91642 0.84377 0.95865 0.84305 1.86654 1.58048 1.35184 1.53018 1.20435 0.96654 1.00180 0.98108 1.20720 0.99403 0.97259 0.90852 1.21079 0.94067 0.99579 0.98776 1.20666 0.94928 0.99044 0.88457 1.98401 1.74137 1.97630 1.32317 1.21021 1.02350 1.01422 0.91111 1.17198 0.94081 0.92449 0.85228 1.91573 1.89798 1.72706 1.55570 0.91609 0.77043 0.89502 0.89662 0.74755 0.76692 0.83690 0.83756 0.82944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.69 13.05 55.50 0.72 -22.97 16 2 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 3 Si 0.93 20.41 29.55 -169.99 -5.02 15.39 16 4 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 5 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 6 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.30 -8.23 9.68 -14.93 -0.14 -8.37 16 8 H 0.11 3.00 7.16 -52.48 -0.38 2.62 16 9 N -0.55 -13.48 5.29 -10.96 -0.06 -13.54 16 10 C 0.43 9.74 7.85 -10.99 -0.09 9.66 16 11 O -0.59 -15.20 15.24 5.55 0.08 -15.11 16 12 C 0.11 1.94 6.15 -5.19 -0.03 1.91 16 13 N -0.70 -11.74 5.48 -61.47 -0.34 -12.08 16 14 C 0.49 7.43 7.15 -10.98 -0.08 7.35 16 15 O -0.54 -9.43 16.32 -14.30 -0.23 -9.67 16 16 C 0.14 1.63 3.39 -29.04 -0.10 1.53 16 17 H 0.14 1.51 7.79 -51.93 -0.40 1.11 16 18 O -0.52 -5.73 12.65 -55.09 -0.70 -6.42 16 19 C -0.15 -1.62 5.02 -104.55 -0.52 -2.15 16 20 C -0.06 -0.54 9.30 -39.59 -0.37 -0.91 16 21 C -0.12 -0.94 9.83 -39.54 -0.39 -1.33 16 22 C 0.00 -0.04 6.32 -39.51 -0.25 -0.29 16 23 Cl -0.05 -0.47 28.96 -51.86 -1.50 -1.97 16 24 C -0.14 -1.45 9.81 -39.48 -0.39 -1.84 16 25 C 0.13 1.51 6.94 -39.42 -0.27 1.23 16 26 F -0.12 -1.55 14.72 2.25 0.03 -1.52 16 27 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 28 H 0.40 9.35 7.90 -40.82 -0.32 9.03 16 29 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 30 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 31 H 0.41 7.07 5.13 -40.82 -0.21 6.86 16 32 H 0.38 3.12 7.07 45.56 0.32 3.44 16 33 H 0.15 0.84 6.40 -52.49 -0.34 0.51 16 34 H 0.14 0.82 8.06 -52.48 -0.42 0.40 16 35 H 0.15 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 331.70 15.07 5.00 5.00 Total: -1.00 -31.73 331.70 -6.89 -38.62 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: -2.15 Total: 16.90 kcal Atomic # 6 Polarization: 10.11 SS G_CDS: -2.73 Total: 7.38 kcal Atomic # 7 Polarization: -48.92 SS G_CDS: 0.33 Total: -48.59 kcal Atomic # 8 Polarization: -30.36 SS G_CDS: -0.85 Total: -31.20 kcal Atomic # 9 Polarization: -1.55 SS G_CDS: 0.03 Total: -1.52 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -1.50 Total: -1.97 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.73 -6.89 -38.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813611429.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.497 kcal (2) G-P(sol) polarization free energy of solvation -31.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds