Wall clock time and date at job start Tue Mar 31 2020 06:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 120.00364 * 2 1 4 4 H 1.48499 * 109.47529 * 240.00659 * 3 2 1 5 5 H 1.48502 * 109.46942 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47059 * 120.00012 * 3 2 1 7 7 C 1.37883 * 119.99973 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99575 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00043 * 359.97438 * 7 2 1 10 10 O 1.42898 * 109.47414 * 180.02562 * 9 7 2 11 11 C 1.42895 * 114.00055 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47157 * 180.02562 * 11 10 9 13 13 O 1.45204 * 109.47069 * 64.99991 * 12 11 10 14 14 C 1.34705 * 116.99876 * 179.97438 * 13 12 11 15 15 O 1.21470 * 120.00001 * 0.02562 * 14 13 12 16 16 C 1.47720 * 119.99761 * 179.97438 * 14 13 12 17 17 C 1.40079 * 120.56133 * 179.97438 * 16 14 13 18 18 C 1.38344 * 118.28070 * 179.70387 * 17 16 14 19 19 C 1.38356 * 119.31234 * 0.28031 * 18 17 16 20 20 S 1.76197 * 119.45912 * 179.97438 * 19 18 17 21 21 N 1.65600 * 107.21955 * 90.00048 * 20 19 18 22 22 O 1.42099 * 106.40405 * 203.54001 * 20 19 18 23 23 O 1.42102 * 106.40221 * 336.46211 * 20 19 18 24 24 N 1.31935 * 121.08774 * 359.97438 * 19 18 17 25 25 C 1.31688 * 121.88668 * 359.97438 * 24 19 18 26 26 H 0.97001 * 119.99423 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.47123 * 60.00122 * 9 7 2 28 28 H 1.09005 * 109.47155 * 300.00454 * 9 7 2 29 29 H 1.08997 * 109.47154 * 60.00522 * 11 10 9 30 30 H 1.08994 * 109.47491 * 300.00394 * 11 10 9 31 31 H 1.09002 * 109.46909 * 305.00510 * 12 11 10 32 32 H 1.09001 * 109.46990 * 184.99982 * 12 11 10 33 33 H 1.08002 * 120.86232 * 359.97438 * 17 16 14 34 34 H 1.08003 * 120.34490 * 180.25582 * 18 17 16 35 35 H 0.96998 * 120.00274 * 149.99927 * 21 20 19 36 36 H 0.97004 * 119.99504 * 330.00204 * 21 20 19 37 37 H 1.07996 * 119.71627 * 179.97438 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 2.1796 -3.5853 -0.0005 11 6 1.5650 -4.8754 0.0000 12 6 2.6479 -5.9562 0.0006 13 8 3.3991 -5.8881 1.2414 14 6 4.3967 -6.7789 1.4021 15 8 4.6329 -7.5902 0.5294 16 6 5.2041 -6.7685 2.6390 17 6 6.2438 -7.6898 2.8187 18 6 6.9737 -7.6338 3.9926 19 6 6.6529 -6.6827 4.9449 20 16 7.5796 -6.6083 6.4417 21 7 8.8453 -5.5722 6.1836 22 8 6.7397 -5.9841 7.4030 23 8 8.1477 -7.8976 6.6264 24 7 5.6646 -5.8306 4.7507 25 6 4.9415 -5.8431 3.6502 26 1 -0.4849 0.8401 0.0004 27 1 0.6240 -2.5567 -0.8903 28 1 0.6246 -2.5571 0.8897 29 1 0.9446 -4.9827 -0.8897 30 1 0.9451 -4.9822 0.8902 31 1 3.3216 -5.7960 -0.8412 32 1 2.1819 -6.9375 -0.0885 33 1 6.4727 -8.4222 2.0586 34 1 7.7853 -8.3254 4.1641 35 1 9.2077 -5.0560 6.9207 36 1 9.2244 -5.4814 5.2954 37 1 4.1401 -5.1294 3.5281 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815221559.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:03 Heat of formation + Delta-G solvation = -166.129506 kcal Electronic energy + Delta-G solvation = -24750.110043 eV Core-core repulsion = 20620.279024 eV Total energy + Delta-G solvation = -4129.831020 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.081 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.20230 -39.96274 -37.60286 -37.25593 -36.27755 -36.25351 -33.68101 -33.29197 -32.85509 -32.48312 -30.20087 -27.08365 -25.96674 -24.36653 -22.76756 -22.34143 -21.47722 -20.20702 -19.11449 -18.46034 -17.86810 -17.64273 -16.89347 -16.76111 -16.58142 -16.40128 -15.57181 -15.50744 -15.28640 -14.81396 -14.58719 -14.46623 -14.22166 -13.74467 -13.48622 -13.12412 -12.80535 -12.64751 -12.50115 -12.39797 -12.07079 -11.90512 -11.54649 -11.17355 -11.00974 -10.99597 -10.85202 -10.79111 -10.67870 -10.57009 -10.16909 -10.12418 -10.10284 -9.20497 -8.94825 -8.28148 -6.16510 -4.18725 -0.53412 -0.10559 0.54556 1.95140 2.30562 2.58059 2.94982 3.27828 3.29138 3.32190 3.35598 3.55410 4.10494 4.17479 4.26071 4.30285 4.36647 4.59410 4.62694 4.87506 5.02516 5.15108 5.20231 5.30121 5.39849 5.50643 5.72836 5.80436 5.81260 5.92091 6.24247 6.54766 6.96815 6.98008 7.33050 7.42998 7.72251 8.06379 8.44251 8.92820 9.46277 10.94927 Molecular weight = 330.08amu Principal moments of inertia in cm(-1) A = 0.012273 B = 0.002591 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.814664 B =10804.580801 C =12561.689851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.909 3.091 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.518 4.518 8 H 0.066 0.934 9 C 0.195 3.805 10 O -0.392 6.392 11 C 0.060 3.940 12 C 0.076 3.924 13 O -0.331 6.331 14 C 0.509 3.491 15 O -0.499 6.499 16 C -0.116 4.116 17 C -0.028 4.028 18 C -0.099 4.099 19 C -0.425 4.425 20 S 2.715 3.285 21 N -1.243 6.243 22 O -0.934 6.934 23 O -0.950 6.950 24 N -0.391 5.391 25 C 0.145 3.855 26 H 0.265 0.735 27 H 0.006 0.994 28 H 0.008 0.992 29 H 0.066 0.934 30 H 0.052 0.948 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.163 0.837 34 H 0.166 0.834 35 H 0.425 0.575 36 H 0.418 0.582 37 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.871 -16.562 8.743 24.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.144 4.144 3 Si 0.736 3.264 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.556 4.556 8 H 0.084 0.916 9 C 0.121 3.879 10 O -0.312 6.312 11 C -0.017 4.017 12 C 0.003 3.997 13 O -0.246 6.246 14 C 0.351 3.649 15 O -0.389 6.389 16 C -0.119 4.119 17 C -0.055 4.055 18 C -0.120 4.120 19 C -0.643 4.643 20 S 2.796 3.204 21 N -0.918 5.918 22 O -0.923 6.923 23 O -0.939 6.939 24 N -0.100 5.100 25 C -0.017 4.017 26 H 0.075 0.925 27 H 0.024 0.976 28 H 0.026 0.974 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.180 0.820 34 H 0.184 0.816 35 H 0.256 0.744 36 H 0.245 0.755 37 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 15.394 -16.595 9.919 24.714 hybrid contribution 0.203 0.592 -1.809 1.914 sum 15.598 -16.002 8.110 23.773 Atomic orbital electron populations 1.69944 1.06120 1.27402 1.50232 1.24947 0.94990 0.99468 0.95010 0.86380 0.79325 0.81813 0.78873 1.20025 1.21112 1.19919 1.20989 0.94035 0.89272 1.51279 0.91575 1.20244 0.88698 0.83374 0.95577 1.87911 1.35403 1.12585 1.95255 1.22338 0.93081 0.85435 1.00888 1.23364 0.93636 0.99278 0.83454 1.86633 1.42753 1.52939 1.42305 1.20751 0.79287 0.78819 0.86006 1.90849 1.67797 1.37717 1.42500 1.20615 0.97496 0.99047 0.94773 1.21896 0.90927 0.95601 0.97035 1.22039 1.00035 0.97368 0.92570 1.33751 1.08550 1.00900 1.21115 1.01725 0.72904 0.73582 0.72145 1.52997 1.53475 1.64686 1.20677 1.93640 1.66305 1.75779 1.56608 1.93663 1.77400 1.39713 1.83083 1.67960 1.01919 1.19337 1.20754 1.23769 0.96492 0.94769 0.86625 0.92504 0.97573 0.97410 0.91598 0.92965 0.90051 0.89978 0.81987 0.81626 0.74358 0.75525 0.79115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.39 13.29 55.43 0.74 -25.65 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.91 21.49 29.54 -169.99 -5.02 16.47 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.52 -14.91 9.43 -34.44 -0.32 -15.24 16 8 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 9 C 0.20 5.16 5.69 36.00 0.20 5.37 16 10 O -0.39 -8.98 10.30 -38.80 -0.40 -9.38 16 11 C 0.06 1.01 6.33 37.16 0.24 1.25 16 12 C 0.08 1.07 5.85 37.16 0.22 1.29 16 13 O -0.33 -4.89 9.47 -43.29 -0.41 -5.30 16 14 C 0.51 6.76 7.91 34.60 0.27 7.03 16 15 O -0.50 -7.27 16.21 -19.24 -0.31 -7.58 16 16 C -0.12 -1.29 5.89 -104.84 -0.62 -1.91 16 17 C -0.03 -0.24 9.72 -38.85 -0.38 -0.62 16 18 C -0.10 -0.75 9.54 -39.50 -0.38 -1.12 16 19 C -0.42 -3.98 6.86 -17.46 -0.12 -4.10 16 20 S 2.71 22.15 6.34 -107.50 -0.68 21.47 16 21 N -1.24 -5.35 9.52 60.35 0.57 -4.77 16 22 O -0.93 -11.42 17.85 -57.17 -1.02 -12.44 16 23 O -0.95 -9.32 17.24 -57.17 -0.99 -10.31 16 24 N -0.39 -4.61 10.09 -12.10 -0.12 -4.74 16 25 C 0.14 1.68 10.79 -17.12 -0.18 1.50 16 26 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 27 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 28 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.16 1.11 7.74 -52.49 -0.41 0.70 16 34 H 0.17 0.74 7.59 -52.48 -0.40 0.34 16 35 H 0.42 1.19 8.96 -34.47 -0.31 0.88 16 36 H 0.42 0.88 8.96 -34.47 -0.31 0.57 16 37 H 0.19 2.15 7.62 -52.49 -0.40 1.75 16 LS Contribution 350.48 15.07 5.28 5.28 Total: -1.00 -38.16 350.48 -7.43 -45.59 By element: Atomic # 1 Polarization: 0.29 SS G_CDS: -3.90 Total: -3.62 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: -1.17 Total: -5.02 kcal Atomic # 7 Polarization: -36.35 SS G_CDS: 1.19 Total: -35.16 kcal Atomic # 8 Polarization: -41.89 SS G_CDS: -3.13 Total: -45.02 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: 22.15 SS G_CDS: -0.68 Total: 21.47 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -38.16 -7.43 -45.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815221559.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.538 kcal (2) G-P(sol) polarization free energy of solvation -38.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds