Wall clock time and date at job start Tue Mar 31 2020 06:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00142 * 2 1 4 4 H 1.48498 * 109.47295 * 270.00115 * 3 2 1 5 5 H 1.48509 * 109.46919 * 30.00029 * 3 2 1 6 6 H 1.48501 * 109.47061 * 150.00031 * 3 2 1 7 7 C 1.37871 * 119.99841 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00289 * 359.97438 * 7 2 1 9 9 C 1.50702 * 120.00147 * 179.97438 * 7 2 1 10 10 O 1.42897 * 109.47315 * 179.97438 * 9 7 2 11 11 C 1.42907 * 113.99976 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.47182 * 180.02562 * 11 10 9 13 13 O 1.45202 * 109.46791 * 64.99785 * 12 11 10 14 14 C 1.34674 * 116.99713 * 179.97438 * 13 12 11 15 15 O 1.21439 * 119.99803 * 0.02562 * 14 13 12 16 16 C 1.48044 * 120.00120 * 180.02562 * 14 13 12 17 17 C 1.39880 * 120.92632 * 0.02562 * 16 14 13 18 18 C 1.38127 * 118.99739 * 179.97438 * 17 16 14 19 19 N 1.31825 * 120.90318 * 359.97315 * 18 17 16 20 20 C 1.31797 * 122.05972 * 0.02953 * 19 18 17 21 21 S 1.76200 * 119.54870 * 179.97438 * 20 19 18 22 22 N 1.65597 * 107.22113 * 89.99599 * 21 20 19 23 23 O 1.42100 * 106.40337 * 336.45305 * 21 20 19 24 24 O 1.42104 * 106.39700 * 203.53465 * 21 20 19 25 25 C 1.38176 * 120.89697 * 0.26618 * 20 19 18 26 26 H 0.97001 * 119.99768 * 0.02562 * 1 2 3 27 27 H 1.09006 * 109.46991 * 60.00064 * 9 7 2 28 28 H 1.08993 * 109.47140 * 300.00607 * 9 7 2 29 29 H 1.08998 * 109.46911 * 60.00184 * 11 10 9 30 30 H 1.08996 * 109.47074 * 300.00357 * 11 10 9 31 31 H 1.09002 * 109.47118 * 305.00473 * 12 11 10 32 32 H 1.08993 * 109.47098 * 185.00316 * 12 11 10 33 33 H 1.07996 * 120.50261 * 359.97438 * 17 16 14 34 34 H 1.08003 * 119.54493 * 179.97438 * 18 17 16 35 35 H 0.97001 * 120.00224 * 240.00401 * 22 21 20 36 36 H 0.97005 * 120.00050 * 59.72170 * 22 21 20 37 37 H 1.08001 * 120.49669 * 179.73368 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 8 3.9878 -2.5413 -0.0010 11 6 5.4124 -2.6542 -0.0009 12 6 5.8069 -4.1325 -0.0015 13 8 5.3727 -4.7488 -1.2424 14 6 5.6454 -6.0578 -1.4031 15 8 6.2294 -6.6679 -0.5304 16 6 5.2333 -6.7530 -2.6434 17 6 4.5602 -6.0691 -3.6612 18 6 4.1947 -6.7568 -4.8020 19 7 4.4724 -8.0383 -4.9382 20 6 5.1046 -8.7202 -4.0041 21 16 5.4413 -10.4314 -4.2553 22 7 6.9203 -10.5371 -4.9924 23 8 4.4873 -10.8934 -5.2017 24 8 5.5948 -11.0038 -2.9637 25 6 5.5016 -8.1129 -2.8282 26 1 -0.4850 0.8401 -0.0004 27 1 3.8752 -0.6805 0.8889 28 1 3.8745 -0.6800 -0.8910 29 1 5.8151 -2.1706 0.8890 30 1 5.8152 -2.1707 -0.8909 31 1 5.3310 -4.6359 0.8401 32 1 6.8897 -4.2196 0.0882 33 1 4.3298 -5.0192 -3.5567 34 1 3.6743 -6.2375 -5.5932 35 1 6.9990 -10.9545 -5.8645 36 1 7.7075 -10.1778 -4.5540 37 1 6.0154 -8.6789 -2.0653 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815233603.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:48 Heat of formation + Delta-G solvation = -162.147522 kcal Electronic energy + Delta-G solvation = -24821.413553 eV Core-core repulsion = 20691.755205 eV Total energy + Delta-G solvation = -4129.658348 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.081 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.19466 -40.00215 -37.63774 -37.40664 -36.37704 -36.28645 -33.72586 -33.47782 -32.77350 -32.16329 -30.47166 -27.76447 -25.90625 -24.57578 -22.81701 -22.00159 -21.71940 -20.12283 -19.12699 -18.11919 -17.81219 -17.47642 -17.04300 -16.79225 -16.66283 -16.59762 -16.12622 -15.58643 -15.10825 -15.06909 -14.84206 -14.60968 -14.46378 -13.67999 -13.27912 -13.06320 -12.70383 -12.64487 -12.55305 -12.51561 -12.42464 -11.88794 -11.87034 -11.35087 -11.12686 -11.07967 -10.89262 -10.77852 -10.71771 -10.60882 -10.19391 -10.11371 -9.96078 -9.30556 -9.02826 -8.60957 -6.19963 -4.20148 -0.23887 -0.02327 0.17374 2.07146 2.22878 2.62184 2.99492 3.17169 3.24363 3.25163 3.31821 3.61058 4.03085 4.18274 4.26504 4.29447 4.32766 4.50044 4.56924 4.92900 4.94184 5.08381 5.10817 5.20086 5.37215 5.45874 5.52124 5.63574 5.75815 5.82943 6.17153 6.44097 6.55345 6.85746 6.99001 7.39711 7.47649 7.83475 8.53171 8.90670 9.38132 10.92908 Molecular weight = 330.08amu Principal moments of inertia in cm(-1) A = 0.022381 B = 0.002250 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.748859 B =12441.953747 C =13148.958011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.073 3.927 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.522 4.522 8 H 0.083 0.917 9 C 0.169 3.831 10 O -0.376 6.376 11 C 0.057 3.943 12 C 0.075 3.925 13 O -0.333 6.333 14 C 0.508 3.492 15 O -0.496 6.496 16 C -0.089 4.089 17 C -0.053 4.053 18 C 0.079 3.921 19 N -0.369 5.369 20 C -0.462 4.462 21 S 2.716 3.284 22 N -1.239 6.239 23 O -0.934 6.934 24 O -0.944 6.944 25 C -0.030 4.030 26 H 0.267 0.733 27 H 0.005 0.995 28 H 0.001 0.999 29 H 0.068 0.932 30 H 0.053 0.947 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.169 0.831 34 H 0.182 0.818 35 H 0.425 0.575 36 H 0.419 0.581 37 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.081 -16.300 -11.071 26.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.129 4.129 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.560 4.560 8 H 0.101 0.899 9 C 0.094 3.906 10 O -0.295 6.295 11 C -0.021 4.021 12 C 0.002 3.998 13 O -0.248 6.248 14 C 0.352 3.648 15 O -0.385 6.385 16 C -0.099 4.099 17 C -0.074 4.074 18 C -0.082 4.082 19 N -0.079 5.079 20 C -0.679 4.679 21 S 2.796 3.204 22 N -0.913 5.913 23 O -0.924 6.924 24 O -0.933 6.933 25 C -0.051 4.051 26 H 0.078 0.922 27 H 0.022 0.978 28 H 0.019 0.981 29 H 0.086 0.914 30 H 0.071 0.929 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.186 0.814 34 H 0.199 0.801 35 H 0.256 0.744 36 H 0.247 0.753 37 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 16.985 -17.578 -11.180 26.879 hybrid contribution 1.277 2.627 0.788 3.025 sum 18.262 -14.951 -10.392 25.788 Atomic orbital electron populations 1.69872 1.06070 1.27210 1.49937 1.24773 0.94825 0.98781 0.94566 0.86844 0.80299 0.83739 0.78793 1.19877 1.20695 1.19141 1.20855 0.88117 0.95385 1.51642 0.89940 1.20644 0.96380 0.79065 0.94526 1.87980 1.16495 1.29958 1.95110 1.22415 0.86317 0.92455 1.00905 1.23325 0.99447 0.93281 0.83766 1.86604 1.73293 1.22771 1.42137 1.20810 0.76469 0.81510 0.86058 1.90858 1.38248 1.67021 1.42347 1.19623 1.02147 0.94072 0.94017 1.23071 0.89607 1.03041 0.91646 1.23260 0.97629 0.89891 0.97416 1.67636 1.04242 1.08470 1.27596 1.33743 1.09849 1.26206 0.98081 1.01710 0.72738 0.72254 0.73664 1.53226 1.26373 1.76577 1.35103 1.93627 1.58820 1.78052 1.61889 1.93684 1.85813 1.73028 1.40791 1.22148 0.92857 0.93707 0.96357 0.92247 0.97778 0.98139 0.91429 0.92907 0.89829 0.89826 0.81379 0.80093 0.74448 0.75336 0.81373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.96 13.96 55.43 0.77 -26.19 16 2 C 0.07 2.08 5.47 -17.82 -0.10 1.99 16 3 Si 0.88 20.63 27.47 -169.99 -4.67 15.96 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.27 -5.96 6.54 56.52 0.37 -5.59 16 7 C -0.52 -15.06 9.99 -34.44 -0.34 -15.41 16 8 H 0.08 2.62 8.06 -52.49 -0.42 2.20 16 9 C 0.17 4.07 4.76 36.01 0.17 4.24 16 10 O -0.38 -8.23 10.30 -38.80 -0.40 -8.62 16 11 C 0.06 0.88 6.33 37.16 0.24 1.11 16 12 C 0.08 1.02 5.85 37.16 0.22 1.23 16 13 O -0.33 -4.77 9.55 -43.20 -0.41 -5.18 16 14 C 0.51 6.84 7.92 34.75 0.28 7.12 16 15 O -0.50 -7.45 16.24 -19.22 -0.31 -7.76 16 16 C -0.09 -1.01 5.91 -104.66 -0.62 -1.63 16 17 C -0.05 -0.52 9.71 -39.01 -0.38 -0.89 16 18 C 0.08 0.71 11.17 -17.60 -0.20 0.51 16 19 N -0.37 -3.87 10.08 -12.50 -0.13 -4.00 16 20 C -0.46 -4.55 6.86 -17.59 -0.12 -4.67 16 21 S 2.72 23.03 6.34 -107.50 -0.68 22.35 16 22 N -1.24 -4.84 9.52 60.35 0.57 -4.26 16 23 O -0.93 -10.97 17.85 -57.17 -1.02 -12.00 16 24 O -0.94 -10.43 17.25 -57.17 -0.99 -11.42 16 25 C -0.03 -0.30 9.13 -39.01 -0.36 -0.66 16 26 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 27 H 0.00 0.11 7.20 -51.93 -0.37 -0.27 16 28 H 0.00 0.02 7.57 -51.93 -0.39 -0.37 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.17 1.47 7.71 -52.49 -0.40 1.07 16 34 H 0.18 1.04 8.06 -52.48 -0.42 0.61 16 35 H 0.42 0.94 8.96 -34.47 -0.31 0.63 16 36 H 0.42 0.72 8.96 -34.47 -0.31 0.41 16 37 H 0.17 1.55 7.29 -52.49 -0.38 1.17 16 LS Contribution 347.08 15.07 5.23 5.23 Total: -1.00 -38.76 347.08 -7.12 -45.87 By element: Atomic # 1 Polarization: 0.95 SS G_CDS: -3.87 Total: -2.93 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: -1.21 Total: -7.05 kcal Atomic # 7 Polarization: -35.67 SS G_CDS: 1.22 Total: -34.45 kcal Atomic # 8 Polarization: -41.85 SS G_CDS: -3.13 Total: -44.99 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -4.67 Total: 15.96 kcal Atomic # 16 Polarization: 23.03 SS G_CDS: -0.68 Total: 22.35 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -38.76 -7.12 -45.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815233603.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.274 kcal (2) G-P(sol) polarization free energy of solvation -38.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds