Wall clock time and date at job start Tue Mar 31 2020 06:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00142 * 2 1 4 4 H 1.48498 * 109.47295 * 270.00115 * 3 2 1 5 5 H 1.48509 * 109.46919 * 30.00029 * 3 2 1 6 6 H 1.48501 * 109.47061 * 150.00031 * 3 2 1 7 7 C 1.37871 * 119.99841 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00289 * 359.97438 * 7 2 1 9 9 C 1.50702 * 120.00147 * 179.97438 * 7 2 1 10 10 O 1.42897 * 109.47315 * 179.97438 * 9 7 2 11 11 C 1.42907 * 113.99976 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.47182 * 180.02562 * 11 10 9 13 13 O 1.45202 * 109.46791 * 64.99785 * 12 11 10 14 14 C 1.34674 * 116.99713 * 179.97438 * 13 12 11 15 15 O 1.21439 * 119.99803 * 0.02562 * 14 13 12 16 16 C 1.48044 * 120.00120 * 180.02562 * 14 13 12 17 17 C 1.39880 * 120.92632 * 0.02562 * 16 14 13 18 18 C 1.38127 * 118.99739 * 179.97438 * 17 16 14 19 19 N 1.31825 * 120.90318 * 359.97315 * 18 17 16 20 20 C 1.31797 * 122.05972 * 0.02953 * 19 18 17 21 21 S 1.76200 * 119.54870 * 179.97438 * 20 19 18 22 22 N 1.65597 * 107.22113 * 89.99599 * 21 20 19 23 23 O 1.42100 * 106.40337 * 336.45305 * 21 20 19 24 24 O 1.42104 * 106.39700 * 203.53465 * 21 20 19 25 25 C 1.38176 * 120.89697 * 0.26618 * 20 19 18 26 26 H 0.97001 * 119.99768 * 0.02562 * 1 2 3 27 27 H 1.09006 * 109.46991 * 60.00064 * 9 7 2 28 28 H 1.08993 * 109.47140 * 300.00607 * 9 7 2 29 29 H 1.08998 * 109.46911 * 60.00184 * 11 10 9 30 30 H 1.08996 * 109.47074 * 300.00357 * 11 10 9 31 31 H 1.09002 * 109.47118 * 305.00473 * 12 11 10 32 32 H 1.08993 * 109.47098 * 185.00316 * 12 11 10 33 33 H 1.07996 * 120.50261 * 359.97438 * 17 16 14 34 34 H 1.08003 * 119.54493 * 179.97438 * 18 17 16 35 35 H 0.97001 * 120.00224 * 240.00401 * 22 21 20 36 36 H 0.97005 * 120.00050 * 59.72170 * 22 21 20 37 37 H 1.08001 * 120.49669 * 179.73368 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 8 3.9878 -2.5413 -0.0010 11 6 5.4124 -2.6542 -0.0009 12 6 5.8069 -4.1325 -0.0015 13 8 5.3727 -4.7488 -1.2424 14 6 5.6454 -6.0578 -1.4031 15 8 6.2294 -6.6679 -0.5304 16 6 5.2333 -6.7530 -2.6434 17 6 4.5602 -6.0691 -3.6612 18 6 4.1947 -6.7568 -4.8020 19 7 4.4724 -8.0383 -4.9382 20 6 5.1046 -8.7202 -4.0041 21 16 5.4413 -10.4314 -4.2553 22 7 6.9203 -10.5371 -4.9924 23 8 4.4873 -10.8934 -5.2017 24 8 5.5948 -11.0038 -2.9637 25 6 5.5016 -8.1129 -2.8282 26 1 -0.4850 0.8401 -0.0004 27 1 3.8752 -0.6805 0.8889 28 1 3.8745 -0.6800 -0.8910 29 1 5.8151 -2.1706 0.8890 30 1 5.8152 -2.1707 -0.8909 31 1 5.3310 -4.6359 0.8401 32 1 6.8897 -4.2196 0.0882 33 1 4.3298 -5.0192 -3.5567 34 1 3.6743 -6.2375 -5.5932 35 1 6.9990 -10.9545 -5.8645 36 1 7.7075 -10.1778 -4.5540 37 1 6.0154 -8.6789 -2.0653 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815233603.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:48 Heat of formation + Delta-G solvation = -195.332856 kcal Electronic energy + Delta-G solvation = -24822.852577 eV Core-core repulsion = 20691.755205 eV Total energy + Delta-G solvation = -4131.097372 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.081 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.11950 -40.93649 -38.85872 -38.43557 -37.62858 -37.09915 -34.90725 -34.30757 -34.18089 -32.92973 -31.84117 -29.63400 -26.83655 -25.36546 -24.09614 -23.77836 -22.73527 -20.88453 -19.93087 -19.15260 -18.89313 -18.45001 -18.19928 -18.01904 -17.50841 -17.41793 -17.11056 -17.03588 -16.47518 -16.31265 -15.83869 -15.59282 -15.44508 -14.99567 -14.67057 -14.39038 -14.10497 -13.73785 -13.40027 -13.37994 -13.33880 -13.25647 -13.02901 -12.70473 -12.63393 -12.38900 -12.06365 -11.92803 -11.79339 -11.57340 -11.46243 -11.36195 -10.98032 -10.93386 -10.85989 -10.41996 -8.37337 -6.46091 -0.99871 -0.79378 -0.60919 1.11470 1.25228 1.34636 1.38002 1.48516 1.96118 2.23136 2.29655 2.63254 2.85796 2.92548 2.95724 3.15850 3.42700 3.51525 3.74066 3.79058 3.86432 4.08760 4.15510 4.31585 4.37090 4.48239 4.55633 4.62714 4.67523 4.99451 5.11222 5.11486 5.18935 5.42462 5.89993 6.22975 6.31855 6.34852 6.58107 6.69781 7.18353 8.79822 Molecular weight = 330.08amu Principal moments of inertia in cm(-1) A = 0.022381 B = 0.002250 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.748859 B =12441.953747 C =13148.958011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.011 3.989 3 Si 0.958 3.042 4 H -0.258 1.258 5 H -0.277 1.277 6 H -0.241 1.241 7 C -0.548 4.548 8 H 0.027 0.973 9 C 0.179 3.821 10 O -0.408 6.408 11 C 0.049 3.951 12 C 0.073 3.927 13 O -0.344 6.344 14 C 0.511 3.489 15 O -0.517 6.517 16 C -0.106 4.106 17 C -0.050 4.050 18 C 0.083 3.917 19 N -0.385 5.385 20 C -0.463 4.463 21 S 2.741 3.259 22 N -1.217 6.217 23 O -0.967 6.967 24 O -0.971 6.971 25 C -0.033 4.033 26 H 0.273 0.727 27 H 0.018 0.982 28 H 0.018 0.982 29 H 0.093 0.907 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.118 0.882 33 H 0.177 0.823 34 H 0.214 0.786 35 H 0.436 0.564 36 H 0.432 0.568 37 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.631 -14.909 -11.937 28.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.187 4.187 3 Si 0.779 3.221 4 H -0.182 1.182 5 H -0.203 1.203 6 H -0.164 1.164 7 C -0.585 4.585 8 H 0.045 0.955 9 C 0.104 3.896 10 O -0.328 6.328 11 C -0.027 4.027 12 C 0.001 3.999 13 O -0.260 6.260 14 C 0.355 3.645 15 O -0.407 6.407 16 C -0.115 4.115 17 C -0.070 4.070 18 C -0.078 4.078 19 N -0.095 5.095 20 C -0.679 4.679 21 S 2.820 3.180 22 N -0.897 5.897 23 O -0.957 6.957 24 O -0.960 6.960 25 C -0.054 4.054 26 H 0.082 0.918 27 H 0.035 0.965 28 H 0.036 0.964 29 H 0.111 0.889 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.136 0.864 33 H 0.194 0.806 34 H 0.230 0.770 35 H 0.270 0.730 36 H 0.263 0.737 37 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 19.569 -16.211 -12.053 28.126 hybrid contribution 0.472 2.083 1.027 2.370 sum 20.041 -14.128 -11.026 26.885 Atomic orbital electron populations 1.70045 1.08419 1.28822 1.51012 1.25892 0.95808 1.03595 0.93434 0.85577 0.79509 0.77175 0.79867 1.18231 1.20261 1.16376 1.21171 0.91177 0.93701 1.52481 0.95483 1.20357 0.93112 0.80585 0.95596 1.87922 1.20704 1.28714 1.95416 1.22783 0.82845 0.94092 1.03000 1.23412 1.01307 0.92039 0.83182 1.86593 1.73608 1.23316 1.42464 1.21106 0.75827 0.81104 0.86430 1.90839 1.39366 1.67245 1.43230 1.19640 1.03508 0.94563 0.93811 1.23219 0.88962 1.03436 0.91424 1.23787 0.96838 0.89426 0.97778 1.67683 1.04634 1.09227 1.27996 1.33893 1.09654 1.26567 0.97816 1.00779 0.73027 0.71455 0.72717 1.52777 1.25127 1.76242 1.35572 1.93579 1.60831 1.78647 1.62613 1.93651 1.86417 1.73584 1.42349 1.22244 0.93008 0.93456 0.96717 0.91824 0.96462 0.96432 0.88897 0.91050 0.91024 0.86375 0.80585 0.76959 0.73027 0.73690 0.80794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.42 13.96 21.45 0.30 -58.12 16 2 C 0.01 0.61 5.47 84.65 0.46 1.07 16 3 Si 0.96 41.42 27.47 68.60 1.88 43.30 16 4 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16 5 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 6 H -0.24 -9.34 6.54 99.48 0.65 -8.69 16 7 C -0.55 -32.34 9.99 25.60 0.26 -32.09 16 8 H 0.03 1.82 8.06 -2.91 -0.02 1.80 16 9 C 0.18 8.39 4.76 71.24 0.34 8.73 16 10 O -0.41 -17.58 10.30 -145.57 -1.50 -19.08 16 11 C 0.05 1.41 6.33 71.98 0.46 1.86 16 12 C 0.07 1.88 5.85 71.98 0.42 2.30 16 13 O -0.34 -9.61 9.55 -53.17 -0.51 -10.12 16 14 C 0.51 13.58 7.92 70.42 0.56 14.14 16 15 O -0.52 -15.39 16.24 20.03 0.33 -15.07 16 16 C -0.11 -2.35 5.91 -19.89 -0.12 -2.47 16 17 C -0.05 -0.92 9.71 22.64 0.22 -0.70 16 18 C 0.08 1.36 11.17 84.67 0.95 2.30 16 19 N -0.38 -7.67 10.08 -193.47 -1.95 -9.62 16 20 C -0.46 -8.85 6.86 84.68 0.58 -8.27 16 21 S 2.74 45.06 6.34 -56.49 -0.36 44.71 16 22 N -1.22 -7.70 9.52 37.02 0.35 -7.35 16 23 O -0.97 -22.45 17.85 -128.00 -2.28 -24.73 16 24 O -0.97 -21.27 17.25 -128.00 -2.21 -23.48 16 25 C -0.03 -0.67 9.13 22.64 0.21 -0.47 16 26 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 27 H 0.02 0.78 7.20 -2.38 -0.02 0.76 16 28 H 0.02 0.78 7.57 -2.39 -0.02 0.76 16 29 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.18 2.92 7.71 -2.91 -0.02 2.90 16 34 H 0.21 1.94 8.06 -2.91 -0.02 1.92 16 35 H 0.44 1.17 8.96 -96.74 -0.87 0.31 16 36 H 0.43 0.71 8.96 -96.74 -0.87 -0.16 16 37 H 0.17 3.22 7.29 -2.91 -0.02 3.19 16 Total: -1.00 -86.06 347.08 -2.26 -88.33 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -0.64 Total: 4.82 kcal Atomic # 6 Polarization: -17.92 SS G_CDS: 4.33 Total: -13.59 kcal Atomic # 7 Polarization: -73.79 SS G_CDS: -1.30 Total: -75.09 kcal Atomic # 8 Polarization: -86.29 SS G_CDS: -6.17 Total: -92.47 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 1.88 Total: 43.30 kcal Atomic # 16 Polarization: 45.06 SS G_CDS: -0.36 Total: 44.71 kcal Total: -86.06 -2.26 -88.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815233603.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.007 kcal (2) G-P(sol) polarization free energy of solvation -86.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds