Wall clock time and date at job start Tue Mar 31 2020 05:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34634 * 116.99548 * 2 1 4 4 O 1.21508 * 120.00782 * 0.02562 * 3 2 1 5 5 N 1.34781 * 119.99664 * 179.97438 * 3 2 1 6 6 C 1.46931 * 120.62766 * 0.02562 * 5 3 2 7 7 C 1.53187 * 108.77274 * 233.60345 * 6 5 3 8 8 C 1.53049 * 109.31497 * 305.36469 * 7 6 5 9 9 C 1.53039 * 109.53353 * 61.36666 * 8 7 6 10 10 H 1.09002 * 109.49751 * 58.58726 * 9 8 7 11 11 N 1.46907 * 109.49602 * 178.65201 * 9 8 7 12 12 C 1.46892 * 110.99955 * 204.93662 * 11 9 8 13 13 C 1.52996 * 109.47307 * 180.02562 * 12 11 9 14 14 H 1.09003 * 109.46812 * 305.00214 * 13 12 11 15 15 O 1.42899 * 109.47429 * 64.99782 * 13 12 11 16 16 C 1.52998 * 109.47376 * 185.00180 * 13 12 11 17 17 N 1.46906 * 109.47155 * 179.97438 * 16 13 12 18 18 C 1.46895 * 110.99932 * 293.95259 * 17 16 13 19 19 C 1.46902 * 111.00069 * 169.99641 * 17 16 13 20 20 C 1.50699 * 109.47037 * 190.00207 * 19 17 16 21 21 H 1.07999 * 119.99820 * 359.97438 * 20 19 17 22 22 C 1.37878 * 119.99578 * 180.02562 * 20 19 17 23 23 N 1.31516 * 119.99501 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 120.00374 * 0.02562 * 22 20 19 25 25 H 1.48494 * 109.47238 * 89.99750 * 24 22 20 26 26 H 1.48499 * 109.46906 * 210.00086 * 24 22 20 27 27 H 1.48503 * 109.46680 * 329.99862 * 24 22 20 28 28 C 1.46925 * 120.63215 * 180.02562 * 5 3 2 29 29 H 1.09006 * 109.47499 * 59.99998 * 1 2 3 30 30 H 1.09004 * 109.47328 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47727 * 299.99761 * 1 2 3 32 32 H 1.09002 * 109.58421 * 113.81629 * 6 5 3 33 33 H 1.08996 * 109.58549 * 353.39409 * 6 5 3 34 34 H 1.09006 * 109.49516 * 185.41853 * 7 6 5 35 35 H 1.08993 * 109.49868 * 65.31880 * 7 6 5 36 36 H 1.08998 * 109.45961 * 301.34644 * 8 7 6 37 37 H 1.08993 * 109.45850 * 181.38486 * 8 7 6 38 38 H 1.00900 * 110.99383 * 328.88773 * 11 9 8 39 39 H 1.09005 * 109.47446 * 300.00062 * 12 11 9 40 40 H 1.09002 * 109.47388 * 59.99877 * 12 11 9 41 41 H 0.96693 * 113.99945 * 59.99832 * 15 13 12 42 42 H 1.09002 * 109.46835 * 299.99393 * 16 13 12 43 43 H 1.08998 * 109.47671 * 59.99513 * 16 13 12 44 44 H 1.09002 * 109.47454 * 59.99768 * 18 17 16 45 45 H 1.09004 * 109.47218 * 179.97438 * 18 17 16 46 46 H 1.09003 * 109.47236 * 299.99971 * 18 17 16 47 47 H 1.09009 * 109.47100 * 310.00339 * 19 17 16 48 48 H 1.08996 * 109.46982 * 69.99639 * 19 17 16 49 49 H 0.97004 * 119.99713 * 179.97438 * 23 22 20 50 50 H 1.09005 * 109.58300 * 6.60702 * 28 5 3 51 51 H 1.08998 * 109.58651 * 246.18643 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0631 1.1996 0.0000 4 8 1.4014 2.2187 0.0005 5 7 3.4091 1.2702 0.0005 6 6 4.2228 0.0468 0.0005 7 6 5.2120 0.1127 1.1684 8 6 6.0230 1.4070 1.0724 9 6 5.0811 2.6094 1.1688 10 1 4.5346 2.5688 2.1110 11 7 5.8637 3.8512 1.1091 12 6 5.1500 4.9552 1.7645 13 6 5.9940 6.2287 1.6816 14 1 6.9811 6.0383 2.1029 15 8 6.1276 6.6235 0.3147 16 6 5.3095 7.3465 2.4707 17 7 6.1202 8.5690 2.3916 18 6 7.4064 8.3931 3.0790 19 6 5.3879 9.7222 2.9319 20 6 6.1403 10.9887 2.6143 21 1 7.0697 10.9416 2.0662 22 6 5.6426 12.2074 3.0242 23 7 6.2995 13.3127 2.7474 24 14 4.0361 12.2887 3.9740 25 1 4.3161 12.1934 5.4292 26 1 3.3543 13.5757 3.6842 27 1 3.1609 11.1614 3.5635 28 6 4.0905 2.5719 0.0011 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3635 0.5138 0.8900 32 1 4.7708 -0.0275 -0.9388 33 1 3.5757 -0.8224 0.1182 34 1 5.8858 -0.7430 1.1231 35 1 4.6642 0.0956 2.1105 36 1 6.5511 1.4348 0.1193 37 1 6.7446 1.4447 1.8884 38 1 6.7789 3.7216 1.5136 39 1 4.1957 5.1191 1.2638 40 1 4.9731 4.7036 2.8102 41 1 5.2867 6.8094 -0.1249 42 1 4.3224 7.5368 2.0493 43 1 5.2075 7.0454 3.5133 44 1 7.9586 7.5768 2.6133 45 1 7.9869 9.3128 3.0048 46 1 7.2285 8.1591 4.1286 47 1 4.3961 9.7662 2.4818 48 1 5.2921 9.6178 4.0126 49 1 5.9492 14.1701 3.0355 50 1 3.3561 3.3687 0.1192 51 1 4.6276 2.7036 -0.9382 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819004151.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:22 Heat of formation + Delta-G solvation = -115.192169 kcal Electronic energy + Delta-G solvation = -28855.562997 eV Core-core repulsion = 24790.405860 eV Total energy + Delta-G solvation = -4065.157136 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 329.215 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.01858 -39.13248 -38.07118 -36.63366 -35.92981 -34.96330 -32.86186 -32.43410 -30.86985 -29.10674 -28.12090 -27.49240 -25.84180 -25.64840 -23.76007 -22.43934 -21.88244 -21.11789 -20.18336 -20.04268 -18.48206 -17.42810 -16.92472 -16.87732 -16.45315 -15.93486 -15.44719 -15.26727 -15.13370 -14.86890 -14.59435 -14.42384 -14.22996 -14.06639 -13.89288 -13.63300 -13.30908 -13.10146 -12.87617 -12.73195 -12.49260 -12.40133 -12.18401 -11.74168 -11.62216 -11.48673 -11.46693 -11.23795 -11.13945 -10.97634 -10.88578 -10.79816 -10.70327 -10.67204 -10.23568 -9.88635 -9.51542 -9.24107 -9.17267 -8.64097 -8.55733 -7.32580 -6.02739 -3.99709 1.75250 2.46030 3.28849 3.36691 3.38600 3.44974 3.75729 4.28100 4.39265 4.43459 4.45590 4.54584 4.75923 4.77085 4.80133 4.84760 4.86963 5.02468 5.04340 5.09382 5.15790 5.23000 5.30593 5.33485 5.37061 5.41849 5.47542 5.52652 5.56094 5.62073 5.65263 5.82404 5.89304 5.95782 5.99715 6.12446 6.22236 6.32311 6.70772 6.73952 6.85434 6.92922 7.00705 7.10750 7.61463 7.90981 7.91677 8.01925 8.16028 8.68672 9.07055 9.58882 11.10437 Molecular weight = 329.21amu Principal moments of inertia in cm(-1) A = 0.017695 B = 0.002162 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.989293 B =12950.047178 C =14077.140982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 O -0.373 6.373 3 C 0.648 3.352 4 O -0.569 6.569 5 N -0.593 5.593 6 C 0.110 3.890 7 C -0.133 4.133 8 C -0.123 4.123 9 C 0.074 3.926 10 H 0.047 0.953 11 N -0.671 5.671 12 C 0.025 3.975 13 C 0.119 3.881 14 H 0.093 0.907 15 O -0.534 6.534 16 C 0.020 3.980 17 N -0.518 5.518 18 C 0.035 3.965 19 C 0.162 3.838 20 C -0.507 4.507 21 H 0.082 0.918 22 C 0.067 3.933 23 N -0.900 5.900 24 Si 0.876 3.124 25 H -0.279 1.279 26 H -0.285 1.285 27 H -0.268 1.268 28 C 0.138 3.862 29 H 0.064 0.936 30 H 0.102 0.898 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.067 0.933 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.347 0.653 39 H 0.077 0.923 40 H 0.036 0.964 41 H 0.370 0.630 42 H 0.071 0.929 43 H 0.027 0.973 44 H 0.050 0.950 45 H 0.080 0.920 46 H 0.007 0.993 47 H 0.027 0.973 48 H -0.019 1.019 49 H 0.263 0.737 50 H 0.095 0.905 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.790 -33.461 -3.598 34.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 O -0.286 6.286 3 C 0.402 3.598 4 O -0.458 6.458 5 N -0.334 5.334 6 C -0.012 4.012 7 C -0.172 4.172 8 C -0.161 4.161 9 C -0.037 4.037 10 H 0.065 0.935 11 N -0.303 5.303 12 C -0.105 4.105 13 C 0.058 3.942 14 H 0.111 0.889 15 O -0.337 6.337 16 C -0.110 4.110 17 N -0.242 5.242 18 C -0.113 4.113 19 C 0.035 3.965 20 C -0.545 4.545 21 H 0.100 0.900 22 C -0.135 4.135 23 N -0.539 5.539 24 Si 0.703 3.297 25 H -0.205 1.205 26 H -0.211 1.211 27 H -0.193 1.193 28 C 0.016 3.984 29 H 0.082 0.918 30 H 0.120 0.880 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.110 0.890 34 H 0.100 0.900 35 H 0.085 0.915 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.166 0.834 39 H 0.096 0.904 40 H 0.055 0.945 41 H 0.216 0.784 42 H 0.089 0.911 43 H 0.045 0.955 44 H 0.069 0.931 45 H 0.099 0.901 46 H 0.026 0.974 47 H 0.045 0.955 48 H -0.001 1.001 49 H 0.073 0.927 50 H 0.113 0.887 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.570 -32.778 -4.567 33.560 hybrid contribution -1.744 -0.107 2.423 2.987 sum -7.313 -32.885 -2.144 33.756 Atomic orbital electron populations 1.23208 0.74352 1.03445 1.02883 1.86212 1.24203 1.31077 1.87150 1.18038 0.83159 0.82171 0.76426 1.91020 1.64141 1.34893 1.55736 1.46900 1.01864 1.08703 1.75955 1.21772 0.93853 0.86543 0.99044 1.21915 0.98148 0.98283 0.98817 1.21739 0.97673 0.93312 1.03399 1.21832 0.94640 0.89867 0.97394 0.93504 1.60202 1.05550 1.03601 1.60936 1.22832 0.98536 0.92303 0.96836 1.21814 0.98682 0.89794 0.83866 0.88945 1.86596 1.34705 1.89775 1.22659 1.22793 0.97837 0.92434 0.97898 1.61850 1.03790 1.02035 1.56512 1.22287 0.92631 1.02210 0.94163 1.20211 0.94633 0.89577 0.92048 1.21041 1.09333 0.88402 1.35733 0.90018 1.24912 0.97001 0.95669 0.95876 1.69899 1.39119 0.97854 1.47060 0.86857 0.84653 0.77659 0.80509 1.20452 1.21125 1.19276 1.21636 0.94889 0.82754 0.99135 0.91758 0.87952 0.91836 0.90798 0.88977 0.89992 0.91454 0.90344 0.91361 0.83389 0.90442 0.94548 0.78420 0.91090 0.95499 0.93148 0.90096 0.97404 0.95513 1.00113 0.92696 0.88704 0.89794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.35 10.56 101.05 1.07 1.42 16 2 O -0.37 -3.38 9.20 -40.31 -0.37 -3.75 16 3 C 0.65 7.33 8.43 54.06 0.46 7.79 16 4 O -0.57 -8.35 15.54 -19.28 -0.30 -8.65 16 5 N -0.59 -5.42 2.97 -178.57 -0.53 -5.95 16 6 C 0.11 0.66 6.45 -3.71 -0.02 0.64 16 7 C -0.13 -0.67 6.08 -26.61 -0.16 -0.83 16 8 C -0.12 -0.74 5.17 -26.69 -0.14 -0.88 16 9 C 0.07 0.61 2.64 -67.60 -0.18 0.43 16 10 H 0.05 0.44 7.80 -51.93 -0.41 0.04 16 11 N -0.67 -6.32 6.26 -106.60 -0.67 -6.99 16 12 C 0.02 0.27 5.12 -3.83 -0.02 0.25 16 13 C 0.12 1.62 3.02 -26.73 -0.08 1.54 16 14 H 0.09 1.28 6.55 -51.93 -0.34 0.93 16 15 O -0.53 -8.25 13.15 -35.23 -0.46 -8.71 16 16 C 0.02 0.33 4.62 -3.82 -0.02 0.32 16 17 N -0.52 -10.98 4.62 -244.36 -1.13 -12.11 16 18 C 0.04 0.69 9.14 60.06 0.55 1.24 16 19 C 0.16 3.99 3.79 -4.98 -0.02 3.98 16 20 C -0.51 -14.67 9.01 -34.44 -0.31 -14.98 16 21 H 0.08 2.58 7.37 -52.49 -0.39 2.19 16 22 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 23 N -0.90 -27.93 13.96 55.43 0.77 -27.16 16 24 Si 0.88 21.84 27.47 -169.99 -4.67 17.17 16 25 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 26 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 27 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 28 C 0.14 1.31 5.90 -3.72 -0.02 1.29 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.09 0.50 6.93 -51.93 -0.36 0.14 16 34 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.37 8.10 -51.93 -0.42 -0.05 16 38 H 0.35 3.00 8.33 -39.29 -0.33 2.67 16 39 H 0.08 0.87 7.57 -51.93 -0.39 0.48 16 40 H 0.04 0.38 8.06 -51.93 -0.42 -0.04 16 41 H 0.37 4.86 9.04 45.56 0.41 5.27 16 42 H 0.07 1.15 7.93 -51.93 -0.41 0.74 16 43 H 0.03 0.43 8.12 -51.93 -0.42 0.01 16 44 H 0.05 0.86 6.47 -51.93 -0.34 0.52 16 45 H 0.08 1.78 6.76 -51.93 -0.35 1.43 16 46 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 47 H 0.03 0.67 6.99 -51.92 -0.36 0.31 16 48 H -0.02 -0.46 7.55 -51.93 -0.39 -0.86 16 49 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 50 H 0.09 1.11 6.48 -51.93 -0.34 0.78 16 51 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 400.96 15.07 6.04 6.04 Total: -1.00 -34.98 400.96 -8.53 -43.51 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -8.22 Total: 2.55 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: 1.00 Total: 4.06 kcal Atomic # 7 Polarization: -50.66 SS G_CDS: -1.55 Total: -52.21 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: -1.13 Total: -21.12 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.67 Total: 17.17 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.98 -8.53 -43.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819004151.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.678 kcal (2) G-P(sol) polarization free energy of solvation -34.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds