Wall clock time and date at job start Tue Mar 31 2020 05:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34640 * 116.99592 * 2 1 4 4 O 1.21511 * 120.00280 * 359.97438 * 3 2 1 5 5 N 1.34778 * 119.99555 * 179.97438 * 3 2 1 6 6 C 1.46927 * 120.63319 * 0.02562 * 5 3 2 7 7 C 1.53191 * 108.77717 * 233.58741 * 6 5 3 8 8 C 1.53043 * 109.30884 * 305.36015 * 7 6 5 9 9 C 1.53041 * 109.53626 * 61.36915 * 8 7 6 10 10 H 1.08999 * 109.52821 * 58.60008 * 9 8 7 11 11 N 1.46899 * 109.49922 * 178.68330 * 9 8 7 12 12 C 1.46903 * 111.00406 * 204.83854 * 11 9 8 13 13 C 1.53000 * 109.47214 * 179.97438 * 12 11 9 14 14 H 1.08998 * 109.47026 * 59.99991 * 13 12 11 15 15 O 1.42895 * 109.47150 * 299.99486 * 13 12 11 16 16 C 1.53001 * 109.46979 * 179.97438 * 13 12 11 17 17 N 1.46890 * 109.47159 * 180.46047 * 16 13 12 18 18 C 1.46901 * 111.00259 * 199.85040 * 17 16 13 19 19 C 1.46908 * 111.00150 * 75.89968 * 17 16 13 20 20 C 1.50695 * 109.47080 * 190.00052 * 19 17 16 21 21 H 1.07994 * 120.00373 * 359.97438 * 20 19 17 22 22 C 1.37878 * 119.99538 * 179.97438 * 20 19 17 23 23 N 1.31512 * 120.00420 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00092 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46897 * 89.99554 * 24 22 20 26 26 H 1.48492 * 109.47637 * 210.00081 * 24 22 20 27 27 H 1.48506 * 109.46879 * 330.00307 * 24 22 20 28 28 C 1.46926 * 120.63210 * 179.97438 * 5 3 2 29 29 H 1.08993 * 109.46954 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47514 * 300.00189 * 1 2 3 31 31 H 1.08999 * 109.46747 * 60.00189 * 1 2 3 32 32 H 1.09004 * 109.58660 * 353.36869 * 6 5 3 33 33 H 1.08999 * 109.58688 * 113.79620 * 6 5 3 34 34 H 1.08996 * 109.50199 * 65.30879 * 7 6 5 35 35 H 1.08998 * 109.50104 * 185.41333 * 7 6 5 36 36 H 1.08998 * 109.46086 * 301.34946 * 8 7 6 37 37 H 1.09004 * 109.45686 * 181.38398 * 8 7 6 38 38 H 1.00903 * 111.00216 * 80.87813 * 11 9 8 39 39 H 1.08999 * 109.46933 * 59.99114 * 12 11 9 40 40 H 1.09002 * 109.46393 * 299.99590 * 12 11 9 41 41 H 0.96700 * 114.00136 * 300.00236 * 15 13 12 42 42 H 1.09006 * 109.47339 * 300.46475 * 16 13 12 43 43 H 1.09007 * 109.46946 * 60.46251 * 16 13 12 44 44 H 1.09005 * 109.46749 * 64.82535 * 18 17 16 45 45 H 1.09000 * 109.47538 * 184.82297 * 18 17 16 46 46 H 1.09003 * 109.47343 * 304.82343 * 18 17 16 47 47 H 1.08998 * 109.46612 * 310.00027 * 19 17 16 48 48 H 1.09002 * 109.46848 * 69.99380 * 19 17 16 49 49 H 0.97000 * 120.00862 * 180.02562 * 23 22 20 50 50 H 1.09006 * 109.58542 * 6.63019 * 28 5 3 51 51 H 1.08990 * 109.70783 * 246.27728 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4014 2.2188 -0.0005 5 7 3.4092 1.2702 0.0005 6 6 4.2230 0.0469 0.0005 7 6 5.2125 0.1129 1.1681 8 6 6.0234 1.4072 1.0716 9 6 5.0816 2.6096 1.1681 10 1 4.5353 2.5698 2.1105 11 7 5.8640 3.8514 1.1071 12 6 5.1497 4.9565 1.7604 13 6 5.9943 6.2295 1.6773 14 1 6.1722 6.4798 0.6315 15 8 7.2445 6.0155 2.3353 16 6 5.2500 7.3805 2.3572 17 7 6.0559 8.6053 2.2678 18 6 5.6347 9.5875 3.2757 19 6 5.9946 9.1785 0.9165 20 6 7.0148 10.2805 0.7915 21 1 7.6453 10.5306 1.6318 22 6 7.1431 10.9696 -0.3958 23 7 6.3756 10.6648 -1.4194 24 14 8.4071 12.3363 -0.5507 25 1 9.6936 11.7688 -1.0283 26 1 7.9230 13.3508 -1.5210 27 1 8.6097 12.9756 0.7743 28 6 4.0906 2.5719 0.0000 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 3.5760 -0.8224 0.1187 33 1 4.7707 -0.0276 -0.9389 34 1 4.6650 0.0961 2.1105 35 1 5.8862 -0.7427 1.1229 36 1 6.5512 1.4349 0.1184 37 1 6.7453 1.4450 1.8875 38 1 6.0975 4.0853 0.1537 39 1 4.9721 4.7062 2.8063 40 1 4.1959 5.1194 1.2587 41 1 7.1624 5.7882 3.2716 42 1 4.2928 7.5383 1.8601 43 1 5.0790 7.1339 3.4051 44 1 5.8360 9.1945 4.2723 45 1 6.1883 10.5155 3.1324 46 1 4.5672 9.7814 3.1703 47 1 6.2074 8.4014 0.1823 48 1 4.9984 9.5834 0.7385 49 1 6.4661 11.1493 -2.2548 50 1 3.3563 3.3688 0.1177 51 1 4.6272 2.7055 -0.9393 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819004152.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:27 Heat of formation + Delta-G solvation = -120.204660 kcal Electronic energy + Delta-G solvation = -29012.292531 eV Core-core repulsion = 24946.918037 eV Total energy + Delta-G solvation = -4065.374494 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 329.215 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.97871 -39.04983 -37.87566 -36.56726 -35.79099 -34.81277 -32.78822 -32.44550 -30.72862 -28.79829 -27.98447 -27.22425 -25.53563 -25.40287 -23.56119 -22.64014 -21.73501 -21.44880 -20.22370 -19.94024 -18.40073 -17.39127 -16.89748 -16.49359 -16.34750 -15.51742 -15.33371 -15.23759 -14.95519 -14.66025 -14.47480 -14.40763 -14.21874 -13.87012 -13.78016 -13.48871 -13.23212 -13.14801 -12.91473 -12.52616 -12.36865 -11.98195 -11.88418 -11.73184 -11.38741 -11.33660 -11.24880 -11.11635 -11.09896 -10.94452 -10.87085 -10.74128 -10.66123 -10.58177 -10.31957 -9.72986 -9.46793 -9.27272 -9.08849 -8.41399 -8.38425 -7.16134 -5.98613 -3.98925 1.79433 2.49977 3.36014 3.41446 3.45210 3.50690 3.89751 4.46079 4.50144 4.51643 4.59281 4.61507 4.80509 4.86277 4.88310 4.90146 4.94652 5.10946 5.16924 5.24991 5.31561 5.36377 5.38708 5.42194 5.46382 5.52346 5.61062 5.67068 5.74289 5.76441 5.89237 5.95389 5.99907 6.04239 6.08624 6.17437 6.35974 6.51949 6.76140 6.88940 6.96514 7.25848 7.31405 7.35619 7.84412 7.94732 8.12419 8.21652 8.30263 8.60023 9.08467 9.64783 11.12509 Molecular weight = 329.21amu Principal moments of inertia in cm(-1) A = 0.016404 B = 0.002226 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.461654 B =12573.380237 C =12954.471661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 O -0.372 6.372 3 C 0.647 3.353 4 O -0.571 6.571 5 N -0.589 5.589 6 C 0.110 3.890 7 C -0.135 4.135 8 C -0.109 4.109 9 C 0.075 3.925 10 H 0.080 0.920 11 N -0.664 5.664 12 C 0.024 3.976 13 C 0.120 3.880 14 H 0.100 0.900 15 O -0.530 6.530 16 C 0.025 3.975 17 N -0.530 5.530 18 C 0.038 3.962 19 C 0.192 3.808 20 C -0.503 4.503 21 H 0.063 0.937 22 C 0.054 3.946 23 N -0.901 5.901 24 Si 0.898 3.102 25 H -0.280 1.280 26 H -0.288 1.288 27 H -0.274 1.274 28 C 0.095 3.905 29 H 0.102 0.898 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.091 0.909 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.081 0.919 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.346 0.654 39 H 0.073 0.927 40 H 0.039 0.961 41 H 0.361 0.639 42 H 0.031 0.969 43 H 0.060 0.940 44 H 0.044 0.956 45 H 0.077 0.923 46 H 0.007 0.993 47 H 0.030 0.970 48 H -0.012 1.012 49 H 0.260 0.740 50 H 0.095 0.905 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.899 -25.971 5.132 27.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 O -0.286 6.286 3 C 0.401 3.599 4 O -0.459 6.459 5 N -0.330 5.330 6 C -0.012 4.012 7 C -0.173 4.173 8 C -0.147 4.147 9 C -0.036 4.036 10 H 0.099 0.901 11 N -0.295 5.295 12 C -0.106 4.106 13 C 0.059 3.941 14 H 0.117 0.883 15 O -0.332 6.332 16 C -0.104 4.104 17 N -0.254 5.254 18 C -0.111 4.111 19 C 0.067 3.933 20 C -0.542 4.542 21 H 0.082 0.918 22 C -0.147 4.147 23 N -0.541 5.541 24 Si 0.726 3.274 25 H -0.206 1.206 26 H -0.214 1.214 27 H -0.199 1.199 28 C -0.028 4.028 29 H 0.121 0.879 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.110 0.890 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.099 0.901 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.165 0.835 39 H 0.091 0.909 40 H 0.057 0.943 41 H 0.206 0.794 42 H 0.049 0.951 43 H 0.078 0.922 44 H 0.063 0.937 45 H 0.095 0.905 46 H 0.025 0.975 47 H 0.048 0.952 48 H 0.006 0.994 49 H 0.070 0.930 50 H 0.113 0.887 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.113 -25.741 4.996 27.169 hybrid contribution -1.493 1.093 -0.595 1.943 sum -8.606 -24.648 4.401 26.476 Atomic orbital electron populations 1.23204 0.74397 1.03431 1.02855 1.86219 1.24168 1.31032 1.87149 1.18076 0.83213 0.82171 0.76431 1.91020 1.64162 1.34921 1.55836 1.46850 1.01787 1.08475 1.75908 1.21802 0.93893 0.86288 0.99239 1.21946 0.98103 0.98767 0.98516 1.21523 0.97682 0.92079 1.03391 1.21989 0.92647 0.91332 0.97629 0.90139 1.60555 1.43300 1.02261 1.23353 1.22810 0.95919 0.92174 0.99649 1.21835 0.84119 0.89897 0.98230 0.88269 1.86676 1.28442 1.92116 1.25993 1.22674 0.95017 0.93403 0.99353 1.62022 1.51784 1.03969 1.07644 1.22228 0.97247 0.97374 0.94257 1.19765 0.95550 0.94565 0.83385 1.21158 1.18791 1.16192 0.98019 0.91842 1.24991 0.96290 0.97664 0.95782 1.69954 1.39347 1.41854 1.02900 0.86494 0.81557 0.81533 0.77797 1.20592 1.21417 1.19892 1.22619 0.96301 0.83969 0.99908 0.87943 0.91829 0.91815 0.89030 0.90965 0.91430 0.90073 0.91428 0.90382 0.83485 0.90902 0.94327 0.79445 0.95112 0.92194 0.93747 0.90464 0.97456 0.95190 0.99448 0.93001 0.88677 0.90689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.39 10.56 101.05 1.07 1.45 16 2 O -0.37 -3.63 9.21 -40.32 -0.37 -4.00 16 3 C 0.65 7.83 8.43 54.06 0.46 8.29 16 4 O -0.57 -8.85 15.55 -19.28 -0.30 -9.15 16 5 N -0.59 -5.88 2.97 -178.53 -0.53 -6.41 16 6 C 0.11 0.76 6.45 -3.71 -0.02 0.74 16 7 C -0.13 -0.83 6.08 -26.61 -0.16 -0.99 16 8 C -0.11 -0.84 5.49 -26.69 -0.15 -0.99 16 9 C 0.08 0.72 2.62 -67.57 -0.18 0.54 16 10 H 0.08 0.84 7.80 -51.93 -0.41 0.43 16 11 N -0.66 -7.51 6.12 -106.57 -0.65 -8.16 16 12 C 0.02 0.31 5.15 -3.82 -0.02 0.29 16 13 C 0.12 1.93 3.24 -26.73 -0.09 1.85 16 14 H 0.10 1.89 6.78 -51.93 -0.35 1.53 16 15 O -0.53 -9.01 13.08 -35.23 -0.46 -9.47 16 16 C 0.03 0.45 4.66 -3.83 -0.02 0.43 16 17 N -0.53 -11.63 4.56 -244.36 -1.11 -12.74 16 18 C 0.04 0.75 9.37 60.07 0.56 1.31 16 19 C 0.19 5.10 4.55 -4.97 -0.02 5.08 16 20 C -0.50 -14.45 8.39 -34.44 -0.29 -14.74 16 21 H 0.06 1.82 7.16 -52.49 -0.38 1.44 16 22 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 23 N -0.90 -27.16 13.29 55.43 0.74 -26.43 16 24 Si 0.90 22.10 29.54 -169.99 -5.02 17.08 16 25 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 27 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 28 C 0.10 0.98 5.69 -3.69 -0.02 0.96 16 29 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.09 0.58 6.93 -51.93 -0.36 0.22 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.35 3.98 8.41 -39.29 -0.33 3.65 16 39 H 0.07 0.84 8.06 -51.93 -0.42 0.42 16 40 H 0.04 0.49 7.56 -51.93 -0.39 0.10 16 41 H 0.36 4.83 9.05 45.56 0.41 5.24 16 42 H 0.03 0.56 8.00 -51.93 -0.42 0.14 16 43 H 0.06 0.91 7.94 -51.92 -0.41 0.49 16 44 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.08 1.66 6.66 -51.93 -0.35 1.31 16 46 H 0.01 0.13 8.13 -51.93 -0.42 -0.29 16 47 H 0.03 0.84 6.63 -51.93 -0.34 0.50 16 48 H -0.01 -0.35 8.12 -51.93 -0.42 -0.77 16 49 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 50 H 0.09 1.19 6.48 -51.93 -0.34 0.85 16 51 H 0.07 0.71 8.04 -51.93 -0.42 0.29 16 LS Contribution 405.07 15.07 6.10 6.10 Total: -1.00 -34.56 405.07 -8.86 -43.42 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -8.28 Total: 4.10 kcal Atomic # 6 Polarization: 4.63 SS G_CDS: 1.02 Total: 5.65 kcal Atomic # 7 Polarization: -52.18 SS G_CDS: -1.56 Total: -53.74 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: -1.13 Total: -22.62 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.56 -8.86 -43.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819004152.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.781 kcal (2) G-P(sol) polarization free energy of solvation -34.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds