Wall clock time and date at job start Tue Mar 31 2020 05:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34640 * 116.99963 * 2 1 4 4 O 1.21508 * 119.99875 * 0.02562 * 3 2 1 5 5 N 1.34774 * 119.99922 * 179.97438 * 3 2 1 6 6 C 1.46922 * 120.63193 * 359.97438 * 5 3 2 7 7 C 1.53182 * 108.78145 * 126.41024 * 6 5 3 8 8 C 1.53044 * 109.34036 * 54.61723 * 7 6 5 9 9 C 1.53048 * 109.53453 * 298.68723 * 8 7 6 10 10 H 1.09000 * 109.49644 * 301.34477 * 9 8 7 11 11 N 1.46904 * 109.49185 * 181.27976 * 9 8 7 12 12 C 1.46901 * 110.99655 * 155.06238 * 11 9 8 13 13 C 1.53000 * 109.47074 * 180.02562 * 12 11 9 14 14 H 1.08989 * 109.47532 * 60.00371 * 13 12 11 15 15 O 1.42898 * 109.46978 * 299.99808 * 13 12 11 16 16 C 1.53004 * 109.47177 * 180.02562 * 13 12 11 17 17 N 1.46892 * 109.47307 * 182.15770 * 16 13 12 18 18 C 1.46906 * 111.00182 * 199.76500 * 17 16 13 19 19 C 1.46900 * 111.00172 * 75.81027 * 17 16 13 20 20 C 1.50702 * 109.47110 * 190.00098 * 19 17 16 21 21 H 1.07996 * 120.00095 * 0.02562 * 20 19 17 22 22 C 1.37879 * 119.99650 * 180.02562 * 20 19 17 23 23 N 1.31513 * 120.00430 * 359.72081 * 22 20 19 24 24 Si 1.86805 * 119.99657 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.46927 * 179.72124 * 24 22 20 26 26 H 1.48504 * 109.46980 * 299.72335 * 24 22 20 27 27 H 1.48499 * 109.47004 * 59.72252 * 24 22 20 28 28 C 1.46930 * 120.62819 * 180.02562 * 5 3 2 29 29 H 1.09001 * 109.47454 * 59.99425 * 1 2 3 30 30 H 1.08998 * 109.47178 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46912 * 299.99587 * 1 2 3 32 32 H 1.09002 * 109.58522 * 246.20162 * 6 5 3 33 33 H 1.08997 * 109.58423 * 6.47449 * 6 5 3 34 34 H 1.08997 * 109.50346 * 174.58590 * 7 6 5 35 35 H 1.09004 * 109.50030 * 294.65228 * 7 6 5 36 36 H 1.08990 * 109.48818 * 178.65186 * 8 7 6 37 37 H 1.08993 * 109.43153 * 58.68688 * 8 7 6 38 38 H 1.00892 * 111.00209 * 279.01524 * 11 9 8 39 39 H 1.09001 * 109.47000 * 60.00395 * 12 11 9 40 40 H 1.09007 * 109.47626 * 300.00093 * 12 11 9 41 41 H 0.96700 * 114.00243 * 300.00683 * 15 13 12 42 42 H 1.09000 * 109.47182 * 62.15372 * 16 13 12 43 43 H 1.09000 * 109.47240 * 302.15939 * 16 13 12 44 44 H 1.08993 * 109.47088 * 291.01072 * 18 17 16 45 45 H 1.09001 * 109.46789 * 51.01059 * 18 17 16 46 46 H 1.08996 * 109.47176 * 171.00500 * 18 17 16 47 47 H 1.09002 * 109.47080 * 70.00006 * 19 17 16 48 48 H 1.08997 * 109.47169 * 310.00025 * 19 17 16 49 49 H 0.96998 * 119.99378 * 0.28280 * 23 22 20 50 50 H 1.09005 * 109.58030 * 113.80368 * 28 5 3 51 51 H 1.08995 * 109.70326 * 353.45064 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1997 0.0000 4 8 1.4015 2.2187 0.0005 5 7 3.4092 1.2702 0.0005 6 6 4.2229 0.0469 0.0017 7 6 5.2133 0.1123 -1.1651 8 6 6.0243 1.4066 -1.0696 9 6 5.0824 2.6090 -1.1666 10 1 4.5368 2.5687 -2.1093 11 7 5.8649 3.8508 -1.1056 12 6 5.1517 4.9551 -1.7614 13 6 5.9962 6.2282 -1.6783 14 1 6.9506 6.0644 -2.1784 15 8 6.2271 6.5580 -0.3072 16 6 5.2532 7.3785 -2.3608 17 7 6.0859 8.5881 -2.3265 18 6 5.2716 9.7939 -2.5292 19 6 7.1676 8.5108 -3.3175 20 6 8.1382 9.6412 -3.0909 21 1 7.9687 10.3462 -2.2906 22 6 9.2426 9.7752 -3.9054 23 7 9.4520 8.9134 -4.8766 24 14 10.4460 11.1760 -3.6242 25 1 11.5426 11.0943 -4.6221 26 1 9.7385 12.4734 -3.7711 27 1 11.0134 11.0738 -2.2557 28 6 4.0906 2.5719 0.0011 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 4.7699 -0.0272 0.9416 33 1 3.5757 -0.8225 -0.1138 34 1 5.8870 -0.7433 -1.1190 35 1 4.6665 0.0943 -2.1079 36 1 6.7463 1.4443 -1.8852 37 1 6.5518 1.4345 -0.1162 38 1 6.0966 4.0857 -0.1521 39 1 4.1970 5.1187 -1.2615 40 1 4.9759 4.7038 -2.8074 41 1 5.4197 6.7174 0.2004 42 1 4.3162 7.5675 -1.8368 43 1 5.0427 7.1115 -3.3964 44 1 4.9044 9.8161 -3.5551 45 1 4.4264 9.7813 -1.8409 46 1 5.8797 10.6788 -2.3416 47 1 6.7478 8.5878 -4.3204 48 1 7.6881 7.5587 -3.2137 49 1 8.8272 8.1859 -5.0224 50 1 4.6269 2.7031 0.9410 51 1 3.3578 3.3703 -0.1160 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819004154.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:35 Heat of formation + Delta-G solvation = -124.996239 kcal Electronic energy + Delta-G solvation = -29027.400785 eV Core-core repulsion = 24961.818513 eV Total energy + Delta-G solvation = -4065.582273 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 329.215 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.04234 -39.13411 -38.03925 -36.63380 -35.95865 -34.92232 -32.82844 -32.65657 -30.82577 -28.87751 -28.03154 -26.89057 -25.59315 -25.44298 -23.46542 -22.69653 -21.74835 -21.52055 -20.38822 -20.17858 -18.46017 -17.46211 -16.97793 -16.82256 -16.48104 -15.88732 -15.45233 -15.14891 -14.97885 -14.71574 -14.53955 -14.31183 -14.25868 -13.89641 -13.66729 -13.61250 -13.38154 -13.20433 -13.08634 -12.58769 -12.45780 -12.13117 -11.80814 -11.74820 -11.39410 -11.29381 -11.28963 -11.18405 -11.16119 -11.03322 -10.99969 -10.85474 -10.81117 -10.61132 -10.14415 -9.99360 -9.61495 -9.33901 -8.59996 -8.48806 -8.31606 -7.27552 -6.31370 -3.99109 1.73419 2.43208 3.44827 3.48236 3.51770 3.69667 3.83896 4.45029 4.45656 4.53116 4.57064 4.58495 4.70961 4.75394 4.82780 4.85259 4.88435 5.02980 5.11343 5.12614 5.27244 5.31053 5.35275 5.36187 5.43737 5.46984 5.52014 5.58142 5.65689 5.73473 5.84997 5.90345 5.94500 5.97823 6.00142 6.02556 6.27871 6.45630 6.65992 6.83692 6.90133 7.02519 7.11306 7.25510 7.80555 7.87896 7.99802 8.06295 8.36709 8.64359 8.92849 9.70882 11.07888 Molecular weight = 329.21amu Principal moments of inertia in cm(-1) A = 0.021842 B = 0.002138 C = 0.002017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.649902 B =13091.346775 C =13877.618106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 O -0.371 6.371 3 C 0.648 3.352 4 O -0.573 6.573 5 N -0.589 5.589 6 C 0.110 3.890 7 C -0.135 4.135 8 C -0.110 4.110 9 C 0.075 3.925 10 H 0.081 0.919 11 N -0.669 5.669 12 C 0.027 3.973 13 C 0.118 3.882 14 H 0.109 0.891 15 O -0.541 6.541 16 C 0.024 3.976 17 N -0.524 5.524 18 C 0.042 3.958 19 C 0.183 3.817 20 C -0.584 4.584 21 H 0.056 0.944 22 C 0.012 3.988 23 N -0.915 5.915 24 Si 1.073 2.927 25 H -0.283 1.283 26 H -0.289 1.289 27 H -0.287 1.287 28 C 0.098 3.902 29 H 0.063 0.937 30 H 0.103 0.897 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.067 0.933 38 H 0.350 0.650 39 H 0.032 0.968 40 H 0.079 0.921 41 H 0.360 0.640 42 H 0.061 0.939 43 H 0.031 0.969 44 H 0.010 0.990 45 H 0.043 0.957 46 H 0.073 0.927 47 H -0.023 1.023 48 H 0.022 0.978 49 H 0.266 0.734 50 H 0.074 0.926 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.676 -21.706 10.464 28.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 O -0.285 6.285 3 C 0.402 3.598 4 O -0.462 6.462 5 N -0.330 5.330 6 C -0.012 4.012 7 C -0.174 4.174 8 C -0.148 4.148 9 C -0.037 4.037 10 H 0.099 0.901 11 N -0.300 5.300 12 C -0.103 4.103 13 C 0.057 3.943 14 H 0.127 0.873 15 O -0.343 6.343 16 C -0.106 4.106 17 N -0.248 5.248 18 C -0.107 4.107 19 C 0.057 3.943 20 C -0.623 4.623 21 H 0.075 0.925 22 C -0.191 4.191 23 N -0.552 5.552 24 Si 0.901 3.099 25 H -0.209 1.209 26 H -0.216 1.216 27 H -0.213 1.213 28 C -0.025 4.025 29 H 0.082 0.918 30 H 0.121 0.879 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.110 0.890 34 H 0.100 0.900 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.170 0.830 39 H 0.050 0.950 40 H 0.097 0.903 41 H 0.205 0.795 42 H 0.079 0.921 43 H 0.050 0.950 44 H 0.029 0.971 45 H 0.062 0.938 46 H 0.092 0.908 47 H -0.005 1.005 48 H 0.040 0.960 49 H 0.076 0.924 50 H 0.092 0.908 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -13.314 -20.912 9.624 26.593 hybrid contribution -3.382 -0.500 0.455 3.449 sum -16.696 -21.412 10.079 28.962 Atomic orbital electron populations 1.23209 0.74365 1.03487 1.02820 1.86224 1.24189 1.30992 1.87102 1.18068 0.83199 0.82177 0.76371 1.91005 1.64194 1.34956 1.56000 1.46854 1.01803 1.08498 1.75858 1.21803 0.93891 0.86243 0.99261 1.21944 0.98105 0.98768 0.98542 1.21533 0.97734 0.92073 1.03456 1.22003 0.92700 0.91263 0.97709 0.90064 1.60509 1.43489 1.02233 1.23805 1.22760 0.95283 0.92197 1.00089 1.21953 0.99790 0.89480 0.83029 0.87291 1.86699 1.34713 1.91961 1.20943 1.22715 0.95987 0.93175 0.98733 1.61949 1.10715 0.99647 1.52511 1.22193 0.96091 0.94952 0.97432 1.19888 0.88978 0.98148 0.87258 1.21953 1.09610 1.12919 1.17809 0.92541 1.25855 0.98241 1.01632 0.93387 1.70799 1.38762 1.14988 1.30636 0.83488 0.75819 0.74614 0.75976 1.20892 1.21582 1.21329 1.22587 0.96147 0.83972 0.99825 0.91821 0.87902 0.91836 0.90964 0.88979 0.89983 0.91364 0.90279 0.91414 0.82974 0.94980 0.90263 0.79527 0.92072 0.95042 0.97102 0.93787 0.90781 1.00504 0.95998 0.92433 0.90772 0.88806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.36 10.56 101.05 1.07 1.42 16 2 O -0.37 -3.44 9.20 -40.32 -0.37 -3.81 16 3 C 0.65 7.41 8.43 54.05 0.46 7.86 16 4 O -0.57 -8.34 15.55 -19.28 -0.30 -8.64 16 5 N -0.59 -5.54 2.97 -178.53 -0.53 -6.07 16 6 C 0.11 0.73 6.45 -3.72 -0.02 0.71 16 7 C -0.13 -0.85 6.08 -26.61 -0.16 -1.01 16 8 C -0.11 -0.88 5.49 -26.68 -0.15 -1.03 16 9 C 0.07 0.71 2.62 -67.56 -0.18 0.53 16 10 H 0.08 0.87 7.80 -51.93 -0.41 0.46 16 11 N -0.67 -7.60 6.25 -106.56 -0.67 -8.26 16 12 C 0.03 0.33 5.19 -3.82 -0.02 0.31 16 13 C 0.12 1.89 3.31 -26.73 -0.09 1.80 16 14 H 0.11 2.15 6.73 -51.93 -0.35 1.80 16 15 O -0.54 -8.74 12.58 -35.23 -0.44 -9.18 16 16 C 0.02 0.42 4.65 -3.83 -0.02 0.40 16 17 N -0.52 -11.59 4.59 -244.37 -1.12 -12.71 16 18 C 0.04 0.84 9.31 60.07 0.56 1.40 16 19 C 0.18 4.84 3.86 -4.97 -0.02 4.82 16 20 C -0.58 -17.05 8.58 -34.44 -0.30 -17.35 16 21 H 0.06 1.66 7.10 -52.49 -0.37 1.28 16 22 C 0.01 0.36 5.46 -17.82 -0.10 0.26 16 23 N -0.92 -28.42 13.65 55.43 0.76 -27.66 16 24 Si 1.07 25.95 29.90 -169.99 -5.08 20.87 16 25 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 26 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 27 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 28 C 0.10 0.92 5.69 -3.68 -0.02 0.90 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.09 0.56 6.92 -51.93 -0.36 0.20 16 34 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.35 3.87 7.81 -39.30 -0.31 3.57 16 39 H 0.03 0.37 7.56 -51.93 -0.39 -0.03 16 40 H 0.08 1.01 8.06 -51.92 -0.42 0.59 16 41 H 0.36 4.39 9.04 45.56 0.41 4.80 16 42 H 0.06 0.93 7.75 -51.93 -0.40 0.52 16 43 H 0.03 0.56 8.00 -51.93 -0.42 0.15 16 44 H 0.01 0.21 8.08 -51.93 -0.42 -0.21 16 45 H 0.04 0.74 7.85 -51.93 -0.41 0.33 16 46 H 0.07 1.59 7.01 -51.93 -0.36 1.23 16 47 H -0.02 -0.63 7.94 -51.93 -0.41 -1.04 16 48 H 0.02 0.61 6.47 -51.93 -0.34 0.28 16 49 H 0.27 8.22 7.22 -40.82 -0.29 7.93 16 50 H 0.07 0.62 8.05 -51.93 -0.42 0.21 16 51 H 0.09 1.06 6.49 -51.93 -0.34 0.72 16 LS Contribution 402.69 15.07 6.07 6.07 Total: -1.00 -35.40 402.69 -8.85 -44.25 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -8.18 Total: 4.11 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: 1.01 Total: 1.04 kcal Atomic # 7 Polarization: -53.14 SS G_CDS: -1.56 Total: -54.70 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: -1.11 Total: -21.63 kcal Atomic # 14 Polarization: 25.95 SS G_CDS: -5.08 Total: 20.87 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.40 -8.85 -44.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819004154.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.743 kcal (2) G-P(sol) polarization free energy of solvation -35.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds