Wall clock time and date at job start Tue Mar 31 2020 06:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00225 * 2 1 4 4 C 1.39047 * 120.00226 * 179.97438 * 2 1 3 5 5 C 1.39310 * 119.90690 * 0.02562 * 4 2 1 6 6 C 1.36533 * 120.26719 * 179.97438 * 5 4 2 7 7 C 1.39853 * 120.08339 * 0.02562 * 6 5 4 8 8 C 1.47372 * 120.09538 * 179.97438 * 7 6 5 9 9 O 1.21605 * 119.99944 * 180.02562 * 8 7 6 10 10 N 1.34777 * 119.99678 * 359.97438 * 8 7 6 11 11 S 1.65597 * 120.00031 * 179.97438 * 10 8 7 12 12 O 1.42095 * 104.27826 * 181.07294 * 11 10 8 13 13 O 1.42101 * 104.27703 * 308.93766 * 11 10 8 14 14 C 1.81404 * 104.44430 * 65.00472 * 11 10 8 15 15 C 1.50699 * 109.47085 * 180.02562 * 14 11 10 16 16 H 1.08003 * 120.00289 * 359.97438 * 15 14 11 17 17 C 1.37882 * 120.00207 * 180.02562 * 15 14 11 18 18 N 1.31514 * 119.99945 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00020 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46907 * 60.00261 * 19 17 15 21 21 H 1.48506 * 109.46918 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.47124 * 300.00053 * 19 17 15 23 23 C 1.40064 * 119.81364 * 0.02562 * 7 6 5 24 24 F 1.35098 * 120.13413 * 180.02562 * 23 7 6 25 25 C 1.38008 * 119.73662 * 359.70058 * 23 7 6 26 26 H 1.09002 * 109.47391 * 270.00005 * 1 2 3 27 27 H 1.09001 * 109.46813 * 150.00061 * 1 2 3 28 28 H 1.09004 * 109.47041 * 30.00189 * 1 2 3 29 29 H 1.09000 * 109.47202 * 89.99334 * 3 2 1 30 30 H 1.08993 * 109.47560 * 209.99542 * 3 2 1 31 31 H 1.09000 * 109.47209 * 330.00227 * 3 2 1 32 32 H 1.07990 * 119.86183 * 0.02562 * 5 4 2 33 33 H 1.07995 * 119.95535 * 179.97438 * 6 5 4 34 34 H 0.97003 * 120.00061 * 0.02562 * 10 8 7 35 35 H 1.08997 * 109.47539 * 299.99879 * 14 11 10 36 36 H 1.09002 * 109.47491 * 60.00368 * 14 11 10 37 37 H 0.96998 * 120.00303 * 180.02562 * 18 17 15 38 38 H 1.07995 * 120.04529 * 180.29766 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1603 -1.2042 0.0005 5 6 1.4618 -2.4095 0.0005 6 6 2.1371 -3.5962 0.0005 7 6 3.5356 -3.6069 0.0011 8 6 4.2647 -4.8876 0.0016 9 8 5.4807 -4.8950 0.0026 10 7 3.5837 -6.0507 0.0022 11 16 4.4029 -7.4899 0.0022 12 8 3.3798 -8.4755 -0.0230 13 8 5.3280 -7.3665 -1.0694 14 6 5.2725 -7.5155 1.5940 15 6 6.0642 -8.7923 1.7134 16 1 6.0457 -9.5161 0.9120 17 6 6.8113 -9.0369 2.8461 18 7 6.8326 -8.1562 3.8227 19 14 7.7920 -10.6198 2.9944 20 1 8.7811 -10.6945 1.8892 21 1 8.5040 -10.6408 4.2975 22 1 6.8712 -11.7820 2.9140 23 6 4.2413 -2.3971 0.0022 24 9 5.5923 -2.3999 0.0022 25 6 3.5511 -1.2020 -0.0036 26 1 -0.3634 0.0000 1.0277 27 1 -0.3633 -0.8900 -0.5138 28 1 -0.3633 0.8900 -0.5139 29 1 2.3791 1.5834 1.0277 30 1 3.1499 1.1384 -0.5137 31 1 1.6085 2.0284 -0.5138 32 1 0.3819 -2.4052 -0.0003 33 1 1.5905 -4.5276 0.0010 34 1 2.6137 -6.0448 0.0018 35 1 5.9485 -6.6625 1.6526 36 1 4.5468 -7.4605 2.4055 37 1 7.3584 -8.3281 4.6194 38 1 4.0902 -0.2662 -0.0076 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821582343.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:35 Heat of formation + Delta-G solvation = -112.753785 kcal Electronic energy + Delta-G solvation = -25841.320264 eV Core-core repulsion = 21726.176579 eV Total energy + Delta-G solvation = -4115.143685 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.088 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.83453 -40.29596 -39.18039 -36.43859 -36.09058 -35.10135 -34.06194 -33.28939 -31.34713 -30.47310 -28.98675 -28.55530 -26.02107 -23.52185 -22.83147 -22.68542 -20.87895 -19.27060 -18.43772 -17.53163 -17.21292 -16.78132 -16.32076 -15.96515 -15.91503 -15.55653 -15.33126 -15.09672 -14.94850 -14.65378 -14.40328 -14.15857 -14.09018 -13.23245 -13.10265 -12.82706 -12.73909 -12.48021 -12.45191 -12.33018 -12.08296 -11.82174 -11.42264 -11.39905 -11.22826 -11.12401 -10.83799 -10.60876 -10.42009 -10.21221 -9.95930 -9.75203 -9.10404 -9.09398 -8.64440 -7.82108 -6.26783 -4.37930 0.68530 1.03192 1.11502 2.53542 2.68141 3.24097 3.28939 3.31136 3.35932 3.58662 4.08765 4.26781 4.31150 4.42749 4.48295 4.68377 4.69980 4.76542 4.84863 5.00034 5.04634 5.06654 5.13713 5.21138 5.22364 5.25938 5.36494 5.53528 5.78750 5.85245 5.96610 6.38639 6.66287 6.66574 6.85171 6.90767 7.08970 7.47571 7.79887 7.90308 8.63052 9.28881 10.85041 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.022156 B = 0.002999 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.465912 B = 9334.662392 C = 9775.595334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.626 5.626 3 C 0.086 3.914 4 C 0.269 3.731 5 C -0.217 4.217 6 C -0.002 4.002 7 C -0.238 4.238 8 C 0.581 3.419 9 O -0.480 6.480 10 N -1.058 6.058 11 S 2.556 3.444 12 O -0.970 6.970 13 O -0.951 6.951 14 C -0.404 4.404 15 C -0.535 4.535 16 H 0.070 0.930 17 C 0.077 3.923 18 N -0.877 5.877 19 Si 0.907 3.093 20 H -0.269 1.269 21 H -0.282 1.282 22 H -0.269 1.269 23 C 0.219 3.781 24 F -0.109 7.109 25 C -0.253 4.253 26 H 0.054 0.946 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.136 0.864 33 H 0.138 0.862 34 H 0.420 0.580 35 H 0.100 0.900 36 H 0.085 0.915 37 H 0.269 0.731 38 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.676 20.271 -5.541 26.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.334 5.334 3 C -0.057 4.057 4 C 0.163 3.837 5 C -0.240 4.240 6 C -0.022 4.022 7 C -0.246 4.246 8 C 0.369 3.631 9 O -0.352 6.352 10 N -0.818 5.818 11 S 2.658 3.342 12 O -0.961 6.961 13 O -0.942 6.942 14 C -0.541 4.541 15 C -0.574 4.574 16 H 0.088 0.912 17 C -0.129 4.129 18 N -0.513 5.513 19 Si 0.732 3.268 20 H -0.194 1.194 21 H -0.207 1.207 22 H -0.194 1.194 23 C 0.197 3.803 24 F -0.087 7.087 25 C -0.277 4.277 26 H 0.073 0.927 27 H 0.093 0.907 28 H 0.089 0.911 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.154 0.846 33 H 0.156 0.844 34 H 0.255 0.745 35 H 0.118 0.882 36 H 0.103 0.897 37 H 0.079 0.921 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -14.816 19.928 -6.129 25.577 hybrid contribution 0.207 -0.318 0.762 0.852 sum -14.609 19.609 -5.367 25.035 Atomic orbital electron populations 1.21783 0.78703 1.03189 1.01840 1.46345 1.05616 1.03331 1.78112 1.21793 0.97571 0.84481 1.01884 1.17662 0.90277 0.86109 0.89614 1.20385 1.00383 0.90423 1.12765 1.20680 0.91709 0.98488 0.91313 1.19716 0.94363 0.92249 1.18236 1.17753 0.87086 0.83646 0.74614 1.91039 1.12187 1.87033 1.44934 1.55390 1.20854 1.24237 1.81308 1.07064 0.74854 0.71598 0.80679 1.93512 1.57804 1.55824 1.88929 1.93531 1.63566 1.83880 1.53191 1.27599 1.08299 1.07196 1.10982 1.20251 1.30650 1.01414 1.05108 0.91186 1.24921 0.95664 0.97484 0.94862 1.69953 1.39553 1.34901 1.06891 0.86403 0.80154 0.82400 0.77818 1.19363 1.20706 1.19427 1.17331 0.77294 0.92389 0.93279 1.91627 1.27725 1.97187 1.92166 1.20492 0.92778 0.97647 1.16761 0.92702 0.90726 0.91112 0.92676 0.90800 0.91060 0.84616 0.84405 0.74485 0.88236 0.89680 0.92130 0.83979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.35 10.22 59.85 0.61 0.96 16 2 N -0.63 -4.12 3.39 -187.57 -0.64 -4.76 16 3 C 0.09 0.40 10.22 59.85 0.61 1.01 16 4 C 0.27 2.45 6.55 -83.88 -0.55 1.90 16 5 C -0.22 -1.86 9.13 -39.80 -0.36 -2.23 16 6 C 0.00 -0.02 9.48 -39.59 -0.38 -0.40 16 7 C -0.24 -3.45 5.88 -104.89 -0.62 -4.07 16 8 C 0.58 10.82 7.49 -12.54 -0.09 10.72 16 9 O -0.48 -11.06 13.43 -11.84 -0.16 -11.22 16 10 N -1.06 -18.25 5.55 30.42 0.17 -18.08 16 11 S 2.56 57.67 5.03 -107.50 -0.54 57.13 16 12 O -0.97 -22.58 18.08 -57.54 -1.04 -23.62 16 13 O -0.95 -24.66 17.04 -64.78 -1.10 -25.76 16 14 C -0.40 -10.44 5.64 36.01 0.20 -10.23 16 15 C -0.53 -15.39 9.13 -34.44 -0.31 -15.71 16 16 H 0.07 1.95 7.71 -52.48 -0.40 1.55 16 17 C 0.08 2.21 5.46 -17.82 -0.10 2.11 16 18 N -0.88 -25.74 13.29 55.43 0.74 -25.00 16 19 Si 0.91 21.61 29.54 -169.99 -5.02 16.59 16 20 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 23 C 0.22 3.13 7.28 -38.98 -0.28 2.85 16 24 F -0.11 -1.86 15.54 2.25 0.04 -1.83 16 25 C -0.25 -2.72 9.17 -39.35 -0.36 -3.08 16 26 H 0.05 0.20 8.14 -51.93 -0.42 -0.22 16 27 H 0.07 0.26 6.17 -51.93 -0.32 -0.06 16 28 H 0.07 0.17 7.89 -51.93 -0.41 -0.24 16 29 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.07 0.35 6.16 -51.93 -0.32 0.03 16 31 H 0.07 0.20 7.89 -51.93 -0.41 -0.21 16 32 H 0.14 0.78 6.10 -52.49 -0.32 0.46 16 33 H 0.14 1.04 6.39 -52.49 -0.34 0.71 16 34 H 0.42 5.23 6.80 -34.47 -0.23 4.99 16 35 H 0.10 2.72 7.19 -51.93 -0.37 2.34 16 36 H 0.09 2.11 8.14 -51.92 -0.42 1.68 16 37 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 38 H 0.14 1.24 6.11 -52.49 -0.32 0.92 16 LS Contribution 339.00 15.07 5.11 5.11 Total: -1.00 -38.71 339.00 -7.93 -46.64 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -3.85 Total: 0.96 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: -1.63 Total: -16.16 kcal Atomic # 7 Polarization: -48.11 SS G_CDS: 0.27 Total: -47.84 kcal Atomic # 8 Polarization: -58.30 SS G_CDS: -2.30 Total: -60.60 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.04 Total: -1.83 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: 57.67 SS G_CDS: -0.54 Total: 57.13 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -38.71 -7.93 -46.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821582343.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.110 kcal (2) G-P(sol) polarization free energy of solvation -38.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds