Wall clock time and date at job start Tue Mar 31 2020 05:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38642 * 120.80558 * 2 1 4 4 C 1.38118 * 119.45402 * 180.02562 * 3 2 1 5 5 N 1.31983 * 121.11968 * 359.97438 * 4 3 2 6 6 C 1.32312 * 121.74289 * 359.97438 * 5 4 3 7 7 N 1.38783 * 119.78711 * 180.02562 * 6 5 4 8 8 C 1.46501 * 120.00495 * 359.97438 * 7 6 5 9 9 C 1.53047 * 109.46008 * 275.07398 * 8 7 6 10 10 C 1.53189 * 109.31064 * 178.61117 * 9 8 7 11 11 N 1.46921 * 108.77657 * 54.63594 * 10 9 8 12 12 C 1.36932 * 120.63393 * 126.36943 * 11 10 9 13 13 H 1.08004 * 120.00490 * 208.02083 * 12 11 10 14 14 C 1.38819 * 120.00154 * 28.01682 * 12 11 10 15 15 N 1.31617 * 119.99671 * 17.52248 * 14 12 11 16 16 Si 1.86802 * 120.00109 * 197.52774 * 14 12 11 17 17 H 1.48498 * 109.47111 * 94.06820 * 16 14 12 18 18 H 1.48497 * 109.46809 * 214.06596 * 16 14 12 19 19 H 1.48499 * 109.46962 * 334.06566 * 16 14 12 20 20 C 1.46927 * 118.73736 * 306.38692 * 11 10 9 21 21 C 1.53032 * 109.46274 * 155.00422 * 8 7 6 22 22 C 1.39428 * 120.79843 * 180.02562 * 2 1 3 23 23 C 1.48356 * 120.56857 * 0.02562 * 22 2 1 24 24 N 1.34082 * 126.67910 * 180.02562 * 23 22 2 25 25 N 1.28979 * 107.26554 * 179.97438 * 24 23 22 26 26 N 1.28734 * 108.95689 * 359.97438 * 25 24 23 27 27 H 0.96999 * 125.33610 * 180.02562 * 26 25 24 28 28 N 1.28873 * 109.32086 * 359.76486 * 26 25 24 29 29 H 1.09001 * 109.47079 * 269.98280 * 1 2 3 30 30 H 1.08995 * 109.46494 * 29.97738 * 1 2 3 31 31 H 1.09001 * 109.46852 * 149.97618 * 1 2 3 32 32 H 1.08005 * 120.26873 * 359.97438 * 3 2 1 33 33 H 1.08004 * 119.44255 * 179.97438 * 4 3 2 34 34 H 0.97000 * 119.99897 * 180.02562 * 7 6 5 35 35 H 1.08998 * 109.45512 * 35.02741 * 8 7 6 36 36 H 1.09000 * 109.49528 * 298.56420 * 9 8 7 37 37 H 1.09000 * 109.49869 * 58.65647 * 9 8 7 38 38 H 1.08992 * 109.58790 * 294.84492 * 10 9 8 39 39 H 1.09000 * 109.69897 * 174.48825 * 10 9 8 40 40 H 0.96998 * 120.00049 * 179.97438 * 15 14 12 41 41 H 1.09001 * 109.59042 * 293.82161 * 20 11 10 42 42 H 1.09002 * 109.70262 * 173.46670 * 20 11 10 43 43 H 1.09002 * 109.49638 * 301.33627 * 21 8 7 44 44 H 1.09000 * 109.50291 * 61.39903 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2171 1.1908 0.0000 4 6 3.5979 1.1582 -0.0005 5 7 4.2531 0.0126 -0.0005 6 6 3.6220 -1.1503 0.0005 7 7 4.3518 -2.3308 0.0009 8 6 5.8161 -2.2869 -0.0002 9 6 6.3209 -2.1453 -1.4381 10 6 7.8506 -2.0648 -1.4324 11 7 8.3830 -3.2332 -0.7184 12 6 9.3152 -4.0454 -1.3068 13 1 9.3760 -5.0874 -1.0292 14 6 10.1822 -3.5297 -2.2604 15 7 10.3554 -2.2285 -2.3571 16 14 11.1029 -4.6822 -3.4065 17 1 10.3392 -4.8378 -4.6705 18 1 12.4435 -4.1172 -3.7044 19 1 11.2580 -6.0079 -2.7554 20 6 7.8958 -3.5139 0.6391 21 6 6.3655 -3.5782 0.6102 22 6 2.2209 -1.1977 -0.0005 23 6 1.5100 -2.4998 -0.0017 24 7 2.0700 -3.7180 -0.0018 25 7 1.1108 -4.5803 -0.0024 26 7 -0.0141 -3.9544 -0.0021 27 1 -0.8891 -4.3732 -0.0021 28 7 0.2045 -2.6844 0.0037 29 1 -0.3633 -0.0003 1.0277 30 1 -0.3632 0.8902 -0.5135 31 1 -0.3633 -0.8898 -0.5142 32 1 1.6947 2.1361 -0.0004 33 1 4.1508 2.0860 -0.0010 34 1 3.8923 -3.1851 0.0013 35 1 6.1542 -1.4342 0.5887 36 1 6.0041 -3.0098 -2.0216 37 1 5.9104 -1.2374 -1.8801 38 1 8.1666 -1.1524 -0.9269 39 1 8.2222 -2.0623 -2.4571 40 1 10.9615 -1.8681 -3.0232 41 1 8.2156 -2.7196 1.3136 42 1 8.2952 -4.4681 0.9829 43 1 5.9869 -3.6901 1.6262 44 1 6.0479 -4.4293 0.0078 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826312856.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:59 Heat of formation + Delta-G solvation = 193.911978 kcal Electronic energy + Delta-G solvation = -28206.010893 eV Core-core repulsion = 24390.318846 eV Total energy + Delta-G solvation = -3815.692047 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.166 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.61207 -40.32207 -37.81997 -35.35318 -34.87428 -34.23148 -32.82165 -31.99099 -30.41618 -29.77287 -28.47214 -28.06491 -24.98162 -24.83272 -24.39017 -22.30727 -22.13966 -21.89060 -20.66294 -19.56414 -19.08755 -17.31525 -17.20106 -16.69129 -16.47091 -16.19366 -14.96636 -14.61457 -14.55764 -14.45506 -14.06226 -13.71789 -13.40900 -13.28248 -13.20845 -12.91675 -12.73709 -12.52526 -12.22385 -12.19864 -11.81345 -11.62551 -11.37035 -11.27806 -11.06457 -10.99824 -10.87345 -10.68039 -10.43902 -10.16312 -10.07501 -9.82128 -9.52355 -9.40630 -9.30294 -9.20576 -8.39731 -7.45349 -6.60350 -5.71663 -3.13640 0.63472 1.02961 1.51716 2.06056 2.26015 3.33510 3.43078 3.49769 3.51103 3.70996 3.95193 4.01609 4.55794 4.58229 4.72230 4.94596 5.17197 5.19273 5.31330 5.42921 5.47189 5.48873 5.51581 5.60102 5.63169 5.77520 5.85769 5.93258 6.02273 6.21608 6.23807 6.30858 6.38028 6.48636 6.59594 6.70402 6.77219 6.83999 6.90004 7.04608 7.43418 7.51375 7.67668 7.77271 7.87154 7.98293 8.45732 8.52740 9.28688 9.92199 10.49296 11.36822 Molecular weight = 329.17amu Principal moments of inertia in cm(-1) A = 0.016760 B = 0.003177 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.219704 B = 8811.759111 C = 9824.885523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.043 3.957 3 C -0.259 4.259 4 C 0.183 3.817 5 N -0.539 5.539 6 C 0.454 3.546 7 N -0.697 5.697 8 C 0.156 3.844 9 C -0.144 4.144 10 C 0.175 3.825 11 N -0.593 5.593 12 C -0.252 4.252 13 H 0.065 0.935 14 C 0.002 3.998 15 N -0.901 5.901 16 Si 0.901 3.099 17 H -0.288 1.288 18 H -0.292 1.292 19 H -0.279 1.279 20 C 0.151 3.849 21 C -0.140 4.140 22 C -0.172 4.172 23 C 0.252 3.748 24 N -0.290 5.290 25 N -0.040 5.040 26 N -0.232 5.232 27 H 0.474 0.526 28 N -0.305 5.305 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.093 0.907 32 H 0.134 0.866 33 H 0.159 0.841 34 H 0.417 0.583 35 H 0.085 0.915 36 H 0.051 0.949 37 H 0.053 0.947 38 H 0.021 0.979 39 H 0.087 0.913 40 H 0.253 0.747 41 H 0.020 0.980 42 H 0.057 0.943 43 H 0.053 0.947 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.279 3.884 5.999 25.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.034 3.966 3 C -0.282 4.282 4 C 0.022 3.978 5 N -0.257 5.257 6 C 0.212 3.788 7 N -0.330 5.330 8 C 0.052 3.948 9 C -0.184 4.184 10 C 0.049 3.951 11 N -0.315 5.315 12 C -0.381 4.381 13 H 0.083 0.917 14 C -0.196 4.196 15 N -0.545 5.545 16 Si 0.731 3.269 17 H -0.216 1.216 18 H -0.218 1.218 19 H -0.204 1.204 20 C 0.024 3.976 21 C -0.180 4.180 22 C -0.184 4.184 23 C -0.027 4.027 24 N -0.164 5.164 25 N -0.035 5.035 26 N -0.077 5.077 27 H 0.327 0.673 28 N -0.156 5.156 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.111 0.889 32 H 0.152 0.848 33 H 0.176 0.824 34 H 0.262 0.738 35 H 0.103 0.897 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.039 0.961 39 H 0.105 0.895 40 H 0.063 0.937 41 H 0.038 0.962 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -23.038 3.162 5.902 23.991 hybrid contribution -1.156 -0.601 -0.690 1.474 sum -24.194 2.561 5.211 24.881 Atomic orbital electron populations 1.21134 0.90030 1.04040 1.03138 1.20015 0.96381 0.90974 0.89276 1.21556 0.95247 0.97833 1.13601 1.22660 0.91524 0.95325 0.88286 1.67502 1.39371 0.96827 1.21990 1.18365 0.85864 0.87799 0.86775 1.45872 1.07371 1.05304 1.74479 1.21061 0.76796 0.98903 0.97994 1.22556 1.00581 1.00352 0.94944 1.20738 0.86606 0.88527 0.99221 1.44099 1.46239 1.30438 1.10754 1.19207 1.09093 0.90860 1.18989 0.91681 1.25036 0.97323 0.95623 1.01666 1.70044 1.38438 1.10392 1.35666 0.86293 0.78906 0.80331 0.81353 1.21561 1.21831 1.20417 1.20821 0.89852 0.98745 0.88224 1.22341 0.99615 0.96792 0.99276 1.17382 0.91241 0.87514 1.22249 1.23428 0.86052 0.93827 0.99375 1.75474 1.22742 0.98168 1.19977 1.78870 0.88376 1.22242 1.14021 1.47777 1.11104 1.02619 1.46246 0.67252 1.75029 1.18117 0.98172 1.24331 0.90468 0.91165 0.88866 0.84835 0.82368 0.73752 0.89735 0.93033 0.92852 0.96101 0.89482 0.93699 0.96209 0.92456 0.92785 0.91885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.07 9.28 36.01 0.33 -0.74 16 2 C 0.04 0.49 5.94 -104.03 -0.62 -0.12 16 3 C -0.26 -2.68 9.80 -39.48 -0.39 -3.07 16 4 C 0.18 2.20 11.16 -17.53 -0.20 2.01 16 5 N -0.54 -8.48 9.19 -12.22 -0.11 -8.59 16 6 C 0.45 7.26 7.47 -154.91 -1.16 6.10 16 7 N -0.70 -11.79 5.15 -53.68 -0.28 -12.07 16 8 C 0.16 2.92 2.43 -67.89 -0.16 2.76 16 9 C -0.14 -3.01 5.67 -26.61 -0.15 -3.16 16 10 C 0.18 4.36 5.31 -3.72 -0.02 4.34 16 11 N -0.59 -15.23 2.99 -172.32 -0.52 -15.75 16 12 C -0.25 -7.05 9.58 -15.06 -0.14 -7.20 16 13 H 0.07 1.79 7.89 -52.48 -0.41 1.38 16 14 C 0.00 0.06 4.90 -17.43 -0.09 -0.03 16 15 N -0.90 -26.62 11.22 55.49 0.62 -26.00 16 16 Si 0.90 22.11 29.59 -169.99 -5.03 17.08 16 17 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 18 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 C 0.15 3.25 6.51 -3.71 -0.02 3.23 16 21 C -0.14 -2.60 5.55 -26.61 -0.15 -2.74 16 22 C -0.17 -2.40 5.91 -104.56 -0.62 -3.01 16 23 C 0.25 3.34 7.78 -156.29 -1.22 2.12 16 24 N -0.29 -4.08 9.49 32.14 0.31 -3.78 16 25 N -0.04 -0.46 13.47 60.35 0.81 0.36 16 26 N -0.23 -1.86 7.90 60.35 0.48 -1.38 16 27 H 0.47 1.36 8.96 -340.36 -3.05 -1.69 16 28 N -0.30 -3.14 9.10 32.16 0.29 -2.85 16 29 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.47 8.10 -51.93 -0.42 0.05 16 31 H 0.09 0.84 5.33 -51.93 -0.28 0.56 16 32 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 33 H 0.16 1.43 8.06 -52.48 -0.42 1.00 16 34 H 0.42 6.91 5.16 -40.82 -0.21 6.70 16 35 H 0.08 1.67 7.54 -51.93 -0.39 1.28 16 36 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.09 2.41 6.06 -51.93 -0.31 2.10 16 40 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.06 1.20 7.94 -51.93 -0.41 0.78 16 43 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 44 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 LS Contribution 355.13 15.07 5.35 5.35 Total: -1.00 -33.32 355.13 -11.10 -44.42 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -8.43 Total: 2.73 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: -4.59 Total: 0.48 kcal Atomic # 7 Polarization: -71.66 SS G_CDS: 1.61 Total: -70.06 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.03 Total: 17.08 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.32 -11.10 -44.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826312856.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 238.327 kcal (2) G-P(sol) polarization free energy of solvation -33.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 205.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 193.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds