Wall clock time and date at job start Tue Mar 31 2020 05:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47247 * 2 1 4 4 H 1.08999 * 109.46468 * 304.94628 * 3 2 1 5 5 C 1.53000 * 109.47277 * 184.94355 * 3 2 1 6 6 N 1.46895 * 109.46769 * 184.64248 * 5 3 2 7 7 C 1.47020 * 110.99301 * 171.03135 * 6 5 3 8 8 C 1.53098 * 109.25586 * 182.34852 * 7 6 5 9 9 O 1.43017 * 109.29244 * 303.21735 * 8 7 6 10 10 C 1.43019 * 113.73780 * 58.64940 * 9 8 7 11 11 C 1.47012 * 111.00203 * 294.70555 * 6 5 3 12 12 N 1.46900 * 109.47240 * 64.94099 * 3 2 1 13 13 C 1.46902 * 111.00035 * 65.43232 * 12 3 2 14 14 C 1.52994 * 109.47183 * 185.17287 * 13 12 3 15 15 H 1.09003 * 109.47530 * 305.00434 * 14 13 12 16 16 O 1.42903 * 109.47125 * 65.00195 * 14 13 12 17 17 C 1.53005 * 109.47282 * 184.99822 * 14 13 12 18 18 N 1.46898 * 109.46936 * 176.83296 * 17 14 13 19 19 C 1.46905 * 110.99591 * 163.92801 * 18 17 14 20 20 C 1.46896 * 111.00370 * 287.88218 * 18 17 14 21 21 C 1.50695 * 109.47191 * 169.99980 * 20 18 17 22 22 H 1.08006 * 120.00070 * 0.02562 * 21 20 18 23 23 C 1.37877 * 119.99997 * 179.97438 * 21 20 18 24 24 N 1.31507 * 120.00187 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99787 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47063 * 60.00723 * 25 23 21 27 27 H 1.48500 * 109.46904 * 180.02562 * 25 23 21 28 28 H 1.48493 * 109.47454 * 300.00302 * 25 23 21 29 29 H 1.09008 * 109.47230 * 184.56512 * 1 2 3 30 30 H 1.09001 * 109.47487 * 304.56780 * 1 2 3 31 31 H 1.08996 * 109.47061 * 64.56890 * 1 2 3 32 32 H 1.08991 * 109.47296 * 239.99249 * 2 1 3 33 33 H 1.09000 * 109.46697 * 119.99405 * 2 1 3 34 34 H 1.09002 * 109.46873 * 64.63976 * 5 3 2 35 35 H 1.08998 * 109.46528 * 304.64773 * 5 3 2 36 36 H 1.09003 * 109.47309 * 62.44062 * 7 6 5 37 37 H 1.09003 * 109.54462 * 302.30827 * 7 6 5 38 38 H 1.08997 * 109.51005 * 183.26083 * 8 7 6 39 39 H 1.08996 * 109.50633 * 63.17446 * 8 7 6 40 40 H 1.09002 * 109.50635 * 61.26169 * 10 9 8 41 41 H 1.09000 * 109.50136 * 181.35128 * 10 9 8 42 42 H 1.08999 * 109.50405 * 57.67782 * 11 6 5 43 43 H 1.09000 * 109.50960 * 297.55068 * 11 6 5 44 44 H 1.00899 * 111.00099 * 189.38583 * 12 3 2 45 45 H 1.09005 * 109.46952 * 305.17155 * 13 12 3 46 46 H 1.08997 * 109.46757 * 65.17451 * 13 12 3 47 47 H 0.96698 * 114.00523 * 59.99304 * 16 14 13 48 48 H 1.08992 * 109.46834 * 296.83649 * 17 14 13 49 49 H 1.08994 * 109.46712 * 56.83556 * 17 14 13 50 50 H 1.09000 * 109.46499 * 65.45826 * 19 18 17 51 51 H 1.09002 * 109.47295 * 185.45663 * 19 18 17 52 52 H 1.08999 * 109.47079 * 305.46415 * 19 18 17 53 53 H 1.09000 * 109.47403 * 290.00365 * 20 18 17 54 54 H 1.09000 * 109.46992 * 50.00514 * 20 18 17 55 55 H 0.97001 * 120.00510 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6061 1.9812 -0.8424 5 6 3.5650 1.4443 -0.1243 6 7 4.0637 2.8215 -0.0127 7 6 5.5304 2.8442 0.0860 8 6 6.0024 4.2903 0.2592 9 8 5.5201 5.0787 -0.8323 10 6 4.0953 5.0794 -0.9565 11 6 3.6041 3.6415 -1.1431 12 7 1.6502 2.0998 1.2546 13 6 2.3207 1.4786 2.4047 14 6 1.7943 2.1014 3.6993 15 1 1.9162 3.1838 3.6576 16 8 0.4095 1.7835 3.8521 17 6 2.5795 1.5451 4.8889 18 7 2.1258 2.1988 6.1237 19 6 2.5620 1.4471 7.3081 20 6 2.5901 3.5912 6.1835 21 6 1.9105 4.2987 7.3274 22 1 1.2045 3.7670 7.9482 23 6 2.1906 5.6244 7.5820 24 7 3.0506 6.2718 6.8264 25 14 1.3487 6.5012 9.0005 26 1 1.6802 5.8134 10.2742 27 1 1.8179 7.9088 9.0608 28 1 -0.1216 6.4785 8.7937 29 1 -0.3634 -1.0245 0.0818 30 1 -0.3634 0.5831 0.8462 31 1 -0.3633 0.4413 -0.9281 32 1 1.8933 -0.5139 -0.8898 33 1 1.8933 -0.5138 0.8901 34 1 3.8511 1.0314 -1.0917 35 1 3.9950 0.8364 0.6717 36 1 5.9623 2.4269 -0.8236 37 1 5.8472 2.2526 0.9449 38 1 7.0919 4.3182 0.2748 39 1 5.6147 4.6900 1.1962 40 1 3.6515 5.5016 -0.0549 41 1 3.8057 5.6786 -1.8198 42 1 2.5148 3.6311 -1.1811 43 1 4.0052 3.2375 -2.0727 44 1 1.8389 3.0903 1.2177 45 1 2.1183 0.4075 2.4083 46 1 3.3954 1.6452 2.3322 47 1 0.2261 0.8351 3.8965 48 1 2.4124 0.4707 4.9640 49 1 3.6424 1.7383 4.7449 50 1 3.6497 1.4732 7.3746 51 1 2.1324 1.8976 8.2029 52 1 2.2278 0.4130 7.2255 53 1 3.6693 3.6082 6.3355 54 1 2.3469 4.0957 5.2484 55 1 3.2474 7.2046 7.0053 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905549756.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:34 Heat of formation + Delta-G solvation = -109.739660 kcal Electronic energy + Delta-G solvation = -30575.633857 eV Core-core repulsion = 26646.546254 eV Total energy + Delta-G solvation = -3929.087603 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 329.247 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.86297 -39.61120 -38.48702 -36.90870 -35.80548 -34.58474 -33.16567 -32.23237 -30.92657 -29.85014 -29.22860 -27.42426 -26.40338 -25.32571 -24.95121 -23.61177 -23.09905 -21.66985 -21.45458 -20.43416 -18.57843 -17.90842 -17.54122 -17.18925 -16.91945 -16.75512 -16.49507 -16.14285 -16.10210 -15.98312 -15.74362 -15.36203 -15.11709 -15.00112 -14.66796 -14.42899 -14.32110 -13.95904 -13.73450 -13.69497 -13.25627 -13.10990 -12.97205 -12.84152 -12.72838 -12.57338 -12.49145 -12.41594 -12.32657 -12.17488 -12.14673 -12.01317 -11.70274 -11.57599 -11.50003 -11.32561 -11.21595 -10.74432 -10.59721 -10.57513 -9.49390 -9.07663 -8.92145 -8.18750 -6.28157 1.40283 1.44367 1.51850 2.41445 2.64479 2.88655 3.10469 3.14827 3.55925 3.71009 3.82689 3.87935 3.92601 3.99323 4.13614 4.17655 4.22406 4.24792 4.32666 4.40952 4.42503 4.43442 4.51637 4.55864 4.59648 4.63623 4.66601 4.67759 4.72642 4.75873 4.78937 4.81932 4.88947 4.95629 5.02093 5.08071 5.09229 5.15393 5.22938 5.32146 5.33324 5.41485 5.64295 5.66363 5.88722 5.89890 6.08327 6.10519 6.27954 6.36887 6.54229 6.68213 6.87343 7.20224 7.41096 8.92080 Molecular weight = 329.25amu Principal moments of inertia in cm(-1) A = 0.009880 B = 0.003460 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2833.409983 B = 8090.834468 C = 9855.017207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.109 4.109 3 C 0.095 3.905 4 H 0.081 0.919 5 C 0.026 3.974 6 N -0.549 5.549 7 C 0.026 3.974 8 C 0.060 3.940 9 O -0.403 6.403 10 C 0.058 3.942 11 C 0.023 3.977 12 N -0.663 5.663 13 C 0.049 3.951 14 C 0.131 3.869 15 H 0.053 0.947 16 O -0.552 6.552 17 C 0.029 3.971 18 N -0.542 5.542 19 C 0.042 3.958 20 C 0.213 3.787 21 C -0.524 4.524 22 H 0.060 0.940 23 C 0.002 3.998 24 N -0.934 5.934 25 Si 0.967 3.033 26 H -0.266 1.266 27 H -0.282 1.282 28 H -0.270 1.270 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.048 0.952 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.044 0.956 35 H 0.076 0.924 36 H 0.046 0.954 37 H 0.087 0.913 38 H 0.112 0.888 39 H 0.044 0.956 40 H 0.047 0.953 41 H 0.115 0.885 42 H 0.096 0.904 43 H 0.045 0.955 44 H 0.339 0.661 45 H 0.088 0.912 46 H 0.037 0.963 47 H 0.375 0.625 48 H 0.095 0.905 49 H 0.022 0.978 50 H 0.006 0.994 51 H 0.054 0.946 52 H 0.082 0.918 53 H -0.044 1.044 54 H 0.003 0.997 55 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.326 -13.597 -18.763 23.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.148 4.148 3 C -0.015 4.015 4 H 0.099 0.901 5 C -0.104 4.104 6 N -0.274 5.274 7 C -0.102 4.102 8 C -0.017 4.017 9 O -0.322 6.322 10 C -0.019 4.019 11 C -0.105 4.105 12 N -0.293 5.293 13 C -0.081 4.081 14 C 0.070 3.930 15 H 0.071 0.929 16 O -0.357 6.357 17 C -0.100 4.100 18 N -0.266 5.266 19 C -0.106 4.106 20 C 0.087 3.913 21 C -0.563 4.563 22 H 0.078 0.922 23 C -0.196 4.196 24 N -0.574 5.574 25 Si 0.791 3.209 26 H -0.191 1.191 27 H -0.207 1.207 28 H -0.196 1.196 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.062 0.938 35 H 0.094 0.906 36 H 0.064 0.936 37 H 0.106 0.894 38 H 0.130 0.870 39 H 0.062 0.938 40 H 0.066 0.934 41 H 0.133 0.867 42 H 0.114 0.886 43 H 0.063 0.937 44 H 0.156 0.844 45 H 0.106 0.894 46 H 0.055 0.945 47 H 0.222 0.778 48 H 0.113 0.887 49 H 0.040 0.960 50 H 0.025 0.975 51 H 0.072 0.928 52 H 0.101 0.899 53 H -0.027 1.027 54 H 0.021 0.979 55 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.190 -12.842 -18.416 22.483 hybrid contribution 2.065 0.254 0.159 2.087 sum 3.255 -12.588 -18.258 22.414 Atomic orbital electron populations 1.21600 0.95122 1.01162 1.01902 1.21513 0.96792 0.94381 1.02077 1.21671 0.90965 0.96365 0.92534 0.90115 1.22880 0.98001 0.88504 1.00988 1.62118 1.10078 1.12104 1.43117 1.22691 0.87804 0.97865 1.01813 1.22738 1.00212 0.89547 0.89217 1.87944 1.22342 1.70690 1.51221 1.22803 0.80427 0.96085 1.02584 1.22782 1.01794 0.93987 0.91933 1.60553 1.59829 1.07522 1.01367 1.22420 0.96084 0.99567 0.90053 1.21598 0.81640 0.98118 0.91616 0.92901 1.86643 1.23804 1.29207 1.96074 1.22793 0.96419 0.99469 0.91361 1.61950 1.60019 1.02776 1.01859 1.22213 0.96684 0.97967 0.93783 1.19331 0.90958 0.85076 0.95929 1.21457 1.24541 0.96127 1.14145 0.92188 1.25888 0.95915 0.98226 0.99534 1.70075 1.35705 1.10827 1.40836 0.85477 0.78883 0.77244 0.79275 1.19067 1.20716 1.19550 0.92767 0.92641 0.93287 0.90892 0.91932 0.93756 0.90597 0.93558 0.89429 0.86976 0.93810 0.93422 0.86691 0.88625 0.93674 0.84366 0.89353 0.94529 0.77750 0.88724 0.96020 0.97505 0.92762 0.89898 1.02678 0.97852 0.92781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.85 71.98 0.71 -1.59 16 2 C -0.11 -1.62 5.32 30.60 0.16 -1.45 16 3 C 0.10 1.63 2.28 44.92 0.10 1.73 16 4 H 0.08 1.36 6.71 -2.39 -0.02 1.35 16 5 C 0.03 0.42 3.76 86.30 0.32 0.75 16 6 N -0.55 -10.72 4.06 -895.21 -3.63 -14.35 16 7 C 0.03 0.50 5.65 86.31 0.49 0.99 16 8 C 0.06 1.30 7.01 72.01 0.50 1.80 16 9 O -0.40 -9.76 10.83 -148.98 -1.61 -11.37 16 10 C 0.06 1.18 7.01 72.01 0.50 1.68 16 11 C 0.02 0.41 5.43 86.31 0.47 0.88 16 12 N -0.66 -15.24 5.63 -491.57 -2.77 -18.01 16 13 C 0.05 1.18 4.43 86.30 0.38 1.56 16 14 C 0.13 4.34 3.23 30.59 0.10 4.44 16 15 H 0.05 2.27 6.51 -2.39 -0.02 2.26 16 16 O -0.55 -18.93 13.21 -148.98 -1.97 -20.90 16 17 C 0.03 0.99 4.62 86.31 0.40 1.38 16 18 N -0.54 -23.92 4.63 -927.07 -4.29 -28.21 16 19 C 0.04 1.62 9.32 127.69 1.19 2.81 16 20 C 0.21 11.78 4.57 85.56 0.39 12.18 16 21 C -0.52 -30.94 8.54 25.60 0.22 -30.73 16 22 H 0.06 3.49 7.10 -2.91 -0.02 3.47 16 23 C 0.00 0.13 5.46 84.66 0.46 0.59 16 24 N -0.93 -57.71 13.29 21.45 0.28 -57.43 16 25 Si 0.97 45.68 29.54 68.60 2.03 47.71 16 26 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 27 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 28 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 29 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 30 H 0.05 1.16 7.63 -2.39 -0.02 1.14 16 31 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.07 0.87 8.14 -2.39 -0.02 0.86 16 33 H 0.06 0.94 6.22 -2.39 -0.01 0.93 16 34 H 0.04 0.66 8.13 -2.39 -0.02 0.64 16 35 H 0.08 1.32 6.65 -2.39 -0.02 1.30 16 36 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.09 1.61 8.10 -2.39 -0.02 1.59 16 38 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.10 1.56 6.44 -2.39 -0.02 1.55 16 43 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.34 9.08 8.37 -89.69 -0.75 8.33 16 45 H 0.09 1.78 6.14 -2.38 -0.01 1.76 16 46 H 0.04 0.92 6.60 -2.39 -0.02 0.90 16 47 H 0.38 9.52 9.05 -74.06 -0.67 8.85 16 48 H 0.09 2.57 7.87 -2.39 -0.02 2.55 16 49 H 0.02 0.77 8.05 -2.39 -0.02 0.76 16 50 H 0.01 0.25 8.13 -2.39 -0.02 0.23 16 51 H 0.05 2.28 6.90 -2.39 -0.02 2.27 16 52 H 0.08 2.52 7.97 -2.39 -0.02 2.51 16 53 H -0.04 -2.66 8.11 -2.39 -0.02 -2.68 16 54 H 0.00 0.21 6.36 -2.39 -0.02 0.19 16 55 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -70.29 417.58 -6.11 -76.40 By element: Atomic # 1 Polarization: 29.69 SS G_CDS: -0.56 Total: 29.13 kcal Atomic # 6 Polarization: -9.37 SS G_CDS: 6.41 Total: -2.97 kcal Atomic # 7 Polarization: -107.60 SS G_CDS: -10.41 Total: -118.00 kcal Atomic # 8 Polarization: -28.69 SS G_CDS: -3.58 Total: -32.27 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -70.29 -6.11 -76.40 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905549756.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.342 kcal (2) G-P(sol) polarization free energy of solvation -70.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds