Wall clock time and date at job start Tue Mar 31 2020 05:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37608 * 127.15480 * 2 1 4 4 C 1.47776 * 126.47024 * 359.97438 * 3 2 1 5 5 C 1.39965 * 120.20336 * 179.69349 * 4 3 2 6 6 C 1.38569 * 117.87386 * 180.02562 * 5 4 3 7 7 C 1.38789 * 118.09059 * 0.02562 * 6 5 4 8 8 N 1.31946 * 120.11225 * 0.02562 * 7 6 5 9 9 N 1.28354 * 122.33541 * 359.97438 * 8 7 6 10 10 N 1.31282 * 107.05925 * 179.74226 * 3 2 1 11 11 N 1.28510 * 109.91683 * 0.25655 * 10 3 2 12 12 C 1.31479 * 110.06660 * 0.02562 * 11 10 3 13 13 N 1.38294 * 126.36316 * 179.97438 * 12 11 10 14 14 C 1.46956 * 111.00321 * 58.84992 * 13 12 11 15 15 C 1.53057 * 109.36446 * 176.80895 * 14 13 12 16 16 N 1.46952 * 109.36303 * 58.40142 * 15 14 13 17 17 C 1.46898 * 110.99983 * 176.80726 * 16 15 14 18 18 C 1.50704 * 109.46953 * 58.95003 * 17 16 15 19 19 H 1.08001 * 119.99981 * 5.08201 * 18 17 16 20 20 C 1.37872 * 120.00134 * 185.07804 * 18 17 16 21 21 N 1.31514 * 119.99861 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00039 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46967 * 90.00562 * 22 20 18 24 24 H 1.48502 * 109.47186 * 210.00343 * 22 20 18 25 25 H 1.48493 * 109.47115 * 330.00259 * 22 20 18 26 26 C 1.46956 * 110.88099 * 300.67883 * 16 15 14 27 27 C 1.46961 * 111.00082 * 295.04408 * 13 12 11 28 28 H 1.09003 * 109.47293 * 84.52557 * 1 2 3 29 29 H 1.09001 * 109.46997 * 204.52243 * 1 2 3 30 30 H 1.08993 * 109.47231 * 324.51840 * 1 2 3 31 31 H 1.07996 * 121.06484 * 0.04470 * 5 4 3 32 32 H 1.08008 * 120.95409 * 180.02562 * 6 5 4 33 33 H 1.08001 * 119.94325 * 179.97438 * 7 6 5 34 34 H 1.08996 * 109.48564 * 296.77862 * 14 13 12 35 35 H 1.08995 * 109.48652 * 56.84074 * 14 13 12 36 36 H 1.08992 * 109.48550 * 298.43277 * 15 14 13 37 37 H 1.08998 * 109.48332 * 178.36339 * 15 14 13 38 38 H 1.09003 * 109.47594 * 178.94749 * 17 16 15 39 39 H 1.08999 * 109.47358 * 298.95317 * 17 16 15 40 40 H 0.97001 * 120.00047 * 179.97438 * 21 20 18 41 41 H 1.08996 * 109.48564 * 299.35234 * 26 16 15 42 42 H 1.09009 * 109.48679 * 179.28891 * 26 16 15 43 43 H 1.08995 * 109.49368 * 303.16125 * 27 13 12 44 44 H 1.09002 * 109.48304 * 63.20681 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2961 1.0967 0.0000 4 6 1.8795 2.5146 -0.0005 5 6 2.8415 3.5311 0.0060 6 6 2.3972 4.8437 0.0057 7 6 1.0279 5.0700 -0.0004 8 7 0.1886 4.0519 -0.0053 9 7 0.5888 2.8323 -0.0051 10 7 3.5290 0.6457 0.0056 11 7 3.5250 -0.6394 0.0037 12 6 2.2887 -1.0867 -0.0038 13 7 1.8965 -2.4128 -0.0085 14 6 2.4213 -3.1214 1.1671 15 6 1.9007 -4.5608 1.1664 16 7 2.3151 -5.2281 -0.0756 17 6 1.8985 -6.6368 -0.0805 18 6 0.4002 -6.7180 0.0597 19 1 -0.1917 -5.8147 0.0616 20 6 -0.2148 -7.9455 0.1857 21 7 0.5060 -9.0454 0.1839 22 14 -2.0719 -8.0461 0.3603 23 1 -2.6906 -8.1523 -0.9855 24 1 -2.4294 -9.2418 1.1651 25 1 -2.5721 -6.8243 1.0401 26 6 1.7903 -4.5195 -1.2512 27 6 2.3108 -3.0802 -1.2505 28 1 -0.3634 0.0980 -1.0230 29 1 -0.3633 -0.9350 0.4265 30 1 -0.3633 0.8368 0.5965 31 1 3.8965 3.3000 0.0108 32 1 3.0963 5.6669 0.0102 33 1 0.6486 6.0812 -0.0004 34 1 3.5106 -3.1287 1.1310 35 1 2.0905 -2.6156 2.0742 36 1 0.8127 -4.5539 1.2300 37 1 2.3120 -5.0966 2.0218 38 1 2.2013 -7.1020 -1.0187 39 1 2.3702 -7.1581 0.7524 40 1 0.0734 -9.9090 0.2728 41 1 0.7010 -4.5123 -1.2151 42 1 2.1211 -5.0254 -2.1584 43 1 1.8996 -2.5444 -2.1060 44 1 3.3989 -3.0867 -1.3143 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000908554149.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:14 Heat of formation + Delta-G solvation = 168.603934 kcal Electronic energy + Delta-G solvation = -27635.456336 eV Core-core repulsion = 23818.666850 eV Total energy + Delta-G solvation = -3816.789487 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.166 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.12428 -41.30373 -38.87124 -35.47280 -35.14655 -33.88059 -33.34870 -32.39487 -30.54907 -29.79683 -28.02099 -27.27265 -25.36358 -25.24802 -24.73487 -23.14439 -22.27195 -21.70355 -21.05314 -19.18359 -18.10337 -17.65944 -17.26611 -16.67525 -16.48550 -16.39364 -15.89467 -15.33159 -14.86335 -14.50144 -14.35633 -14.29142 -14.13078 -13.70198 -13.47032 -13.27588 -13.13422 -12.98936 -12.08035 -12.04738 -11.83218 -11.53591 -11.29589 -11.07123 -11.03386 -10.86770 -10.82636 -10.78893 -10.68059 -10.54273 -10.27691 -10.19861 -10.16345 -9.91419 -9.62483 -8.96736 -8.72096 -8.46463 -7.25345 -6.05981 -4.15266 -0.00405 0.28563 1.63402 1.99025 2.51823 3.08821 3.18704 3.25211 3.32627 3.34950 3.73236 3.84487 4.00685 4.22045 4.37824 4.38117 4.52260 4.69831 4.87578 4.92321 5.07902 5.12109 5.24348 5.25010 5.41487 5.44156 5.47623 5.58799 5.59998 5.63123 5.80593 5.83007 5.87299 5.97749 6.11714 6.29831 6.51021 6.64106 6.75581 6.86413 7.21768 7.22385 7.48909 7.86164 7.96949 8.09904 8.19410 8.24487 8.42835 8.94757 9.51834 10.99183 Molecular weight = 329.17amu Principal moments of inertia in cm(-1) A = 0.023799 B = 0.002527 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.250374 B =11075.530865 C =11914.020235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.443 5.443 3 C 0.197 3.803 4 C 0.156 3.844 5 C -0.080 4.080 6 C -0.112 4.112 7 C 0.041 3.959 8 N -0.234 5.234 9 N -0.236 5.236 10 N -0.251 5.251 11 N -0.302 5.302 12 C 0.376 3.624 13 N -0.468 5.468 14 C 0.070 3.930 15 C 0.067 3.933 16 N -0.542 5.542 17 C 0.187 3.813 18 C -0.550 4.550 19 H 0.059 0.941 20 C 0.065 3.935 21 N -0.890 5.890 22 Si 0.889 3.111 23 H -0.281 1.281 24 H -0.286 1.286 25 H -0.275 1.275 26 C 0.065 3.935 27 C 0.071 3.929 28 H 0.082 0.918 29 H 0.099 0.901 30 H 0.101 0.899 31 H 0.165 0.835 32 H 0.159 0.841 33 H 0.178 0.822 34 H 0.059 0.941 35 H 0.070 0.930 36 H 0.052 0.948 37 H 0.078 0.922 38 H 0.029 0.971 39 H 0.037 0.963 40 H 0.262 0.738 41 H 0.050 0.950 42 H 0.077 0.923 43 H 0.070 0.930 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.548 27.100 -0.350 27.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.133 5.133 3 C -0.068 4.068 4 C 0.011 3.989 5 C -0.110 4.110 6 C -0.141 4.141 7 C -0.123 4.123 8 N -0.076 5.076 9 N -0.081 5.081 10 N -0.097 5.097 11 N -0.149 5.149 12 C 0.020 3.980 13 N -0.195 5.195 14 C -0.057 4.057 15 C -0.063 4.063 16 N -0.266 5.266 17 C 0.062 3.938 18 C -0.589 4.589 19 H 0.077 0.923 20 C -0.138 4.138 21 N -0.528 5.528 22 Si 0.717 3.283 23 H -0.207 1.207 24 H -0.212 1.212 25 H -0.199 1.199 26 C -0.064 4.064 27 C -0.056 4.056 28 H 0.101 0.899 29 H 0.118 0.882 30 H 0.120 0.880 31 H 0.182 0.818 32 H 0.177 0.823 33 H 0.195 0.805 34 H 0.077 0.923 35 H 0.089 0.911 36 H 0.071 0.929 37 H 0.096 0.904 38 H 0.047 0.953 39 H 0.055 0.945 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.095 0.905 43 H 0.088 0.912 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.379 26.317 -0.329 26.426 hybrid contribution -1.218 0.326 0.072 1.263 sum 1.161 26.643 -0.257 26.669 Atomic orbital electron populations 1.22267 0.73668 1.05738 1.04672 1.46274 1.09632 1.05284 1.52112 1.21670 0.87545 0.86978 1.10571 1.19712 0.92045 0.89536 0.97608 1.22381 1.02333 0.91821 0.94469 1.22449 0.97262 0.97724 0.96622 1.24452 0.91495 1.01124 0.95238 1.73047 1.31618 0.94296 1.08596 1.73278 1.13292 1.12272 1.09270 1.74306 1.15768 1.03733 1.15905 1.74804 1.17163 1.02395 1.20526 1.22563 0.85166 0.89071 1.01202 1.58953 1.59356 0.94789 1.06373 1.22381 0.99036 0.94790 0.89461 1.21952 0.99649 0.90306 0.94345 1.62710 1.58264 1.05167 1.00508 1.19752 0.93916 0.82061 0.98101 1.21737 0.93456 0.92578 1.51149 0.92340 1.24962 0.98078 0.95797 0.94936 1.69941 1.35386 0.97742 1.49772 0.86645 0.85942 0.77610 0.78117 1.20663 1.21176 1.19945 1.21966 0.98837 0.90292 0.95333 1.22360 0.99858 0.95232 0.88121 0.89924 0.88196 0.88043 0.81768 0.82315 0.80525 0.92278 0.91105 0.92937 0.90378 0.95281 0.94523 0.92780 0.93175 0.90452 0.91159 0.92368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.86 10.51 59.85 0.63 1.49 16 2 N -0.44 -6.04 3.23 -122.11 -0.39 -6.43 16 3 C 0.20 2.65 7.83 -153.75 -1.20 1.45 16 4 C 0.16 1.71 6.83 -82.85 -0.57 1.14 16 5 C -0.08 -0.62 9.84 -38.81 -0.38 -1.00 16 6 C -0.11 -0.55 10.20 -39.26 -0.40 -0.95 16 7 C 0.04 0.25 11.31 -17.30 -0.20 0.05 16 8 N -0.23 -2.31 11.50 30.59 0.35 -1.96 16 9 N -0.24 -2.65 9.18 33.30 0.31 -2.35 16 10 N -0.25 -3.82 11.93 32.59 0.39 -3.43 16 11 N -0.30 -5.05 12.16 30.28 0.37 -4.68 16 12 C 0.38 5.82 6.44 -319.10 -2.05 3.77 16 13 N -0.47 -7.39 4.68 -174.41 -0.82 -8.21 16 14 C 0.07 1.13 5.50 -3.76 -0.02 1.11 16 15 C 0.07 1.25 5.24 -3.77 -0.02 1.23 16 16 N -0.54 -11.19 4.92 -235.91 -1.16 -12.35 16 17 C 0.19 4.65 5.14 -4.97 -0.03 4.62 16 18 C -0.55 -14.55 7.66 -34.44 -0.26 -14.82 16 19 H 0.06 1.54 5.82 -52.49 -0.31 1.23 16 20 C 0.07 1.78 5.46 -17.82 -0.10 1.69 16 21 N -0.89 -25.65 13.29 55.43 0.74 -24.92 16 22 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 26 C 0.06 1.20 5.32 -3.77 -0.02 1.18 16 27 C 0.07 1.14 5.54 -3.77 -0.02 1.12 16 28 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.10 1.08 8.10 -51.93 -0.42 0.66 16 30 H 0.10 1.04 6.63 -51.93 -0.34 0.69 16 31 H 0.16 1.08 7.93 -52.49 -0.42 0.66 16 32 H 0.16 0.18 8.06 -52.48 -0.42 -0.25 16 33 H 0.18 0.39 8.06 -52.49 -0.42 -0.03 16 34 H 0.06 1.00 8.13 -51.93 -0.42 0.57 16 35 H 0.07 1.05 8.13 -51.93 -0.42 0.63 16 36 H 0.05 1.08 6.61 -51.93 -0.34 0.73 16 37 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 38 H 0.03 0.77 8.12 -51.93 -0.42 0.35 16 39 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 41 H 0.05 1.01 6.78 -51.93 -0.35 0.66 16 42 H 0.08 1.40 8.12 -51.92 -0.42 0.98 16 43 H 0.07 1.03 8.13 -51.93 -0.42 0.60 16 44 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 364.04 15.07 5.49 5.49 Total: -1.00 -32.03 364.04 -10.36 -42.39 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -5.96 Total: -1.62 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: -4.64 Total: 2.08 kcal Atomic # 7 Polarization: -64.10 SS G_CDS: -0.22 Total: -64.32 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.03 -10.36 -42.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908554149.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 210.997 kcal (2) G-P(sol) polarization free energy of solvation -32.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 178.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 168.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds