Wall clock time and date at job start Tue Mar 31 2020 05:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37608 * 127.15480 * 2 1 4 4 C 1.47776 * 126.47024 * 359.97438 * 3 2 1 5 5 C 1.39965 * 120.20336 * 179.69349 * 4 3 2 6 6 C 1.38569 * 117.87386 * 180.02562 * 5 4 3 7 7 C 1.38789 * 118.09059 * 0.02562 * 6 5 4 8 8 N 1.31946 * 120.11225 * 0.02562 * 7 6 5 9 9 N 1.28354 * 122.33541 * 359.97438 * 8 7 6 10 10 N 1.31282 * 107.05925 * 179.74226 * 3 2 1 11 11 N 1.28510 * 109.91683 * 0.25655 * 10 3 2 12 12 C 1.31479 * 110.06660 * 0.02562 * 11 10 3 13 13 N 1.38294 * 126.36316 * 179.97438 * 12 11 10 14 14 C 1.46956 * 111.00321 * 58.84992 * 13 12 11 15 15 C 1.53057 * 109.36446 * 176.80895 * 14 13 12 16 16 N 1.46952 * 109.36303 * 58.40142 * 15 14 13 17 17 C 1.46898 * 110.99983 * 176.80726 * 16 15 14 18 18 C 1.50704 * 109.46953 * 58.95003 * 17 16 15 19 19 H 1.08001 * 119.99981 * 5.08201 * 18 17 16 20 20 C 1.37872 * 120.00134 * 185.07804 * 18 17 16 21 21 N 1.31514 * 119.99861 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00039 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46967 * 90.00562 * 22 20 18 24 24 H 1.48502 * 109.47186 * 210.00343 * 22 20 18 25 25 H 1.48493 * 109.47115 * 330.00259 * 22 20 18 26 26 C 1.46956 * 110.88099 * 300.67883 * 16 15 14 27 27 C 1.46961 * 111.00082 * 295.04408 * 13 12 11 28 28 H 1.09003 * 109.47293 * 84.52557 * 1 2 3 29 29 H 1.09001 * 109.46997 * 204.52243 * 1 2 3 30 30 H 1.08993 * 109.47231 * 324.51840 * 1 2 3 31 31 H 1.07996 * 121.06484 * 0.04470 * 5 4 3 32 32 H 1.08008 * 120.95409 * 180.02562 * 6 5 4 33 33 H 1.08001 * 119.94325 * 179.97438 * 7 6 5 34 34 H 1.08996 * 109.48564 * 296.77862 * 14 13 12 35 35 H 1.08995 * 109.48652 * 56.84074 * 14 13 12 36 36 H 1.08992 * 109.48550 * 298.43277 * 15 14 13 37 37 H 1.08998 * 109.48332 * 178.36339 * 15 14 13 38 38 H 1.09003 * 109.47594 * 178.94749 * 17 16 15 39 39 H 1.08999 * 109.47358 * 298.95317 * 17 16 15 40 40 H 0.97001 * 120.00047 * 179.97438 * 21 20 18 41 41 H 1.08996 * 109.48564 * 299.35234 * 26 16 15 42 42 H 1.09009 * 109.48679 * 179.28891 * 26 16 15 43 43 H 1.08995 * 109.49368 * 303.16125 * 27 13 12 44 44 H 1.09002 * 109.48304 * 63.20681 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2961 1.0967 0.0000 4 6 1.8795 2.5146 -0.0005 5 6 2.8415 3.5311 0.0060 6 6 2.3972 4.8437 0.0057 7 6 1.0279 5.0700 -0.0004 8 7 0.1886 4.0519 -0.0053 9 7 0.5888 2.8323 -0.0051 10 7 3.5290 0.6457 0.0056 11 7 3.5250 -0.6394 0.0037 12 6 2.2887 -1.0867 -0.0038 13 7 1.8965 -2.4128 -0.0085 14 6 2.4213 -3.1214 1.1671 15 6 1.9007 -4.5608 1.1664 16 7 2.3151 -5.2281 -0.0756 17 6 1.8985 -6.6368 -0.0805 18 6 0.4002 -6.7180 0.0597 19 1 -0.1917 -5.8147 0.0616 20 6 -0.2148 -7.9455 0.1857 21 7 0.5060 -9.0454 0.1839 22 14 -2.0719 -8.0461 0.3603 23 1 -2.6906 -8.1523 -0.9855 24 1 -2.4294 -9.2418 1.1651 25 1 -2.5721 -6.8243 1.0401 26 6 1.7903 -4.5195 -1.2512 27 6 2.3108 -3.0802 -1.2505 28 1 -0.3634 0.0980 -1.0230 29 1 -0.3633 -0.9350 0.4265 30 1 -0.3633 0.8368 0.5965 31 1 3.8965 3.3000 0.0108 32 1 3.0963 5.6669 0.0102 33 1 0.6486 6.0812 -0.0004 34 1 3.5106 -3.1287 1.1310 35 1 2.0905 -2.6156 2.0742 36 1 0.8127 -4.5539 1.2300 37 1 2.3120 -5.0966 2.0218 38 1 2.2013 -7.1020 -1.0187 39 1 2.3702 -7.1581 0.7524 40 1 0.0734 -9.9090 0.2728 41 1 0.7010 -4.5123 -1.2151 42 1 2.1211 -5.0254 -2.1584 43 1 1.8996 -2.5444 -2.1060 44 1 3.3989 -3.0867 -1.3143 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000908554149.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:13 Heat of formation + Delta-G solvation = 147.571776 kcal Electronic energy + Delta-G solvation = -27636.368359 eV Core-core repulsion = 23818.666850 eV Total energy + Delta-G solvation = -3817.701509 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.166 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.20453 -41.92570 -40.31742 -37.00869 -36.18096 -34.72286 -34.33281 -33.90589 -31.99650 -31.01562 -29.36863 -28.52216 -26.86367 -26.05281 -25.53934 -24.60016 -23.91082 -22.73313 -22.31433 -20.69835 -19.01754 -18.53960 -18.28033 -17.90541 -17.74777 -17.27293 -17.09154 -16.65539 -16.16195 -15.89820 -15.72497 -15.67288 -15.03475 -14.90117 -14.64481 -14.44426 -14.18570 -13.93824 -13.78258 -13.61081 -13.01290 -12.99357 -12.84629 -12.58441 -12.33846 -12.23811 -12.16897 -12.02959 -11.95655 -11.78934 -11.78072 -11.53024 -11.29694 -11.23827 -10.82182 -10.58860 -10.04708 -9.96190 -9.04939 -8.13789 -6.32581 -0.68348 -0.24246 0.64808 0.96258 1.38745 1.39738 1.48088 1.49716 2.25256 2.38986 2.53556 2.60177 3.11786 3.22545 3.28418 3.46978 3.58954 3.72522 3.80820 3.87292 4.04465 4.06782 4.11048 4.17712 4.29573 4.32888 4.38405 4.48328 4.56154 4.65801 4.70358 4.78294 4.82546 4.94576 4.96807 5.05224 5.14724 5.18864 5.23285 5.31213 5.35980 5.55392 5.76088 5.98879 6.05775 6.24436 6.46424 6.87247 7.31771 7.38790 7.48871 8.88982 Molecular weight = 329.17amu Principal moments of inertia in cm(-1) A = 0.023799 B = 0.002527 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.250374 B =11075.530865 C =11914.020235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.444 5.444 3 C 0.214 3.786 4 C 0.128 3.872 5 C -0.086 4.086 6 C -0.088 4.088 7 C 0.051 3.949 8 N -0.268 5.268 9 N -0.256 5.256 10 N -0.273 5.273 11 N -0.327 5.327 12 C 0.363 3.637 13 N -0.465 5.465 14 C 0.084 3.916 15 C 0.072 3.928 16 N -0.544 5.544 17 C 0.201 3.799 18 C -0.552 4.552 19 H 0.060 0.940 20 C 0.012 3.988 21 N -0.926 5.926 22 Si 0.956 3.044 23 H -0.275 1.275 24 H -0.284 1.284 25 H -0.267 1.267 26 C 0.070 3.930 27 C 0.084 3.916 28 H 0.092 0.908 29 H 0.099 0.901 30 H 0.108 0.892 31 H 0.172 0.828 32 H 0.207 0.793 33 H 0.218 0.782 34 H 0.053 0.947 35 H 0.087 0.913 36 H 0.037 0.963 37 H 0.075 0.925 38 H 0.007 0.993 39 H 0.010 0.990 40 H 0.264 0.736 41 H 0.036 0.964 42 H 0.078 0.922 43 H 0.088 0.912 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.705 30.799 -0.366 30.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.134 5.134 3 C -0.053 4.053 4 C -0.018 4.018 5 C -0.116 4.116 6 C -0.116 4.116 7 C -0.113 4.113 8 N -0.109 5.109 9 N -0.101 5.101 10 N -0.118 5.118 11 N -0.173 5.173 12 C 0.006 3.994 13 N -0.192 5.192 14 C -0.043 4.043 15 C -0.057 4.057 16 N -0.268 5.268 17 C 0.074 3.926 18 C -0.591 4.591 19 H 0.078 0.922 20 C -0.188 4.188 21 N -0.566 5.566 22 Si 0.781 3.219 23 H -0.201 1.201 24 H -0.210 1.210 25 H -0.191 1.191 26 C -0.059 4.059 27 C -0.043 4.043 28 H 0.110 0.890 29 H 0.118 0.882 30 H 0.126 0.874 31 H 0.190 0.810 32 H 0.224 0.776 33 H 0.235 0.765 34 H 0.072 0.928 35 H 0.105 0.895 36 H 0.055 0.945 37 H 0.093 0.907 38 H 0.025 0.975 39 H 0.028 0.972 40 H 0.073 0.927 41 H 0.054 0.946 42 H 0.096 0.904 43 H 0.107 0.893 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.531 30.041 -0.348 30.082 hybrid contribution -0.930 -0.576 0.070 1.096 sum 0.601 29.465 -0.277 29.473 Atomic orbital electron populations 1.22376 0.72279 1.05968 1.05413 1.46427 1.10429 1.04841 1.51656 1.22196 0.86992 0.88071 1.08019 1.19748 0.93076 0.88750 1.00248 1.22614 1.02229 0.92447 0.94327 1.22969 0.97588 0.97596 0.93470 1.25175 0.91831 1.01852 0.92440 1.72981 1.33028 0.94604 1.10282 1.73193 1.13466 1.13492 1.09964 1.74238 1.16773 1.03133 1.17659 1.74709 1.18023 1.03340 1.21251 1.22365 0.85387 0.88917 1.02711 1.58884 1.59215 0.95200 1.05894 1.22188 0.98480 0.93120 0.90561 1.21902 0.98612 0.91860 0.93311 1.62620 1.58412 1.03582 1.02200 1.19406 0.93153 0.84310 0.95706 1.21956 0.94182 0.92618 1.50373 0.92210 1.25793 1.02734 0.95500 0.94730 1.70064 1.37319 0.98287 1.50928 0.85584 0.80321 0.77730 0.78221 1.20059 1.20951 1.19121 1.21941 0.97866 0.91746 0.94373 1.22190 0.99386 0.93624 0.89126 0.88994 0.88207 0.87389 0.81023 0.77645 0.76508 0.92847 0.89473 0.94516 0.90695 0.97502 0.97167 0.92681 0.94613 0.90389 0.89330 0.92930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.70 10.51 127.77 1.34 3.04 16 2 N -0.44 -11.84 3.23 -540.25 -1.75 -13.59 16 3 C 0.21 5.61 7.83 136.17 1.07 6.68 16 4 C 0.13 2.63 6.83 41.92 0.29 2.92 16 5 C -0.09 -1.12 9.84 22.77 0.22 -0.90 16 6 C -0.09 -0.48 10.20 22.48 0.23 -0.25 16 7 C 0.05 0.41 11.31 84.81 0.96 1.37 16 8 N -0.27 -4.70 11.50 -57.13 -0.66 -5.35 16 9 N -0.26 -5.43 9.18 -48.54 -0.45 -5.88 16 10 N -0.27 -8.23 11.93 -50.82 -0.61 -8.83 16 11 N -0.33 -10.88 12.16 -58.11 -0.71 -11.59 16 12 C 0.36 11.11 6.44 260.19 1.67 12.78 16 13 N -0.47 -14.55 4.68 -705.70 -3.30 -17.85 16 14 C 0.08 2.69 5.50 86.31 0.47 3.17 16 15 C 0.07 2.75 5.24 86.31 0.45 3.20 16 16 N -0.54 -23.04 4.92 -900.29 -4.43 -27.47 16 17 C 0.20 10.35 5.14 85.56 0.44 10.79 16 18 C -0.55 -29.75 7.66 25.60 0.20 -29.55 16 19 H 0.06 3.16 5.82 -2.91 -0.02 3.15 16 20 C 0.01 0.65 5.46 84.65 0.46 1.12 16 21 N -0.93 -54.48 13.29 21.45 0.28 -54.20 16 22 Si 0.96 43.26 29.54 68.60 2.03 45.29 16 23 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 24 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 25 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 26 C 0.07 2.61 5.32 86.31 0.46 3.06 16 27 C 0.08 2.65 5.54 86.31 0.48 3.13 16 28 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.10 2.09 8.10 -2.39 -0.02 2.07 16 30 H 0.11 2.14 6.63 -2.39 -0.02 2.12 16 31 H 0.17 1.90 7.93 -2.91 -0.02 1.87 16 32 H 0.21 -0.83 8.06 -2.91 -0.02 -0.85 16 33 H 0.22 -0.19 8.06 -2.91 -0.02 -0.21 16 34 H 0.05 1.80 8.13 -2.39 -0.02 1.78 16 35 H 0.09 2.54 8.13 -2.39 -0.02 2.52 16 36 H 0.04 1.52 6.61 -2.39 -0.02 1.51 16 37 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 38 H 0.01 0.38 8.12 -2.39 -0.02 0.36 16 39 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 40 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 41 H 0.04 1.45 6.78 -2.39 -0.02 1.43 16 42 H 0.08 2.88 8.12 -2.38 -0.02 2.86 16 43 H 0.09 2.50 8.13 -2.39 -0.02 2.48 16 44 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -71.56 364.04 0.19 -71.37 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: 1.02 Total: 7.54 kcal Atomic # 6 Polarization: 11.82 SS G_CDS: 8.74 Total: 20.56 kcal Atomic # 7 Polarization: -133.15 SS G_CDS: -11.60 Total: -144.76 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -71.56 0.19 -71.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908554149.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 218.939 kcal (2) G-P(sol) polarization free energy of solvation -71.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds