Wall clock time and date at job start Tue Mar 31 2020 06:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86796 * 119.99980 * 2 1 4 4 H 1.48502 * 109.47153 * 239.99931 * 3 2 1 5 5 H 1.48500 * 109.47290 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46720 * 120.00369 * 3 2 1 7 7 C 1.38959 * 119.99552 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99528 * 180.02562 * 7 2 1 9 9 N 1.37093 * 120.00201 * 359.97438 * 7 2 1 10 10 C 1.34776 * 119.99945 * 180.02562 * 9 7 2 11 11 O 1.21294 * 119.99882 * 0.02562 * 10 9 7 12 12 C 1.50701 * 120.00121 * 179.97438 * 10 9 7 13 13 N 1.46495 * 109.47031 * 180.02562 * 12 10 9 14 14 S 1.65608 * 119.99695 * 165.00069 * 13 12 10 15 15 O 1.42102 * 104.27363 * 181.06921 * 14 13 12 16 16 O 1.42097 * 104.27711 * 308.92535 * 14 13 12 17 17 C 1.81401 * 104.44945 * 64.99881 * 14 13 12 18 18 C 1.52998 * 109.46866 * 179.97438 * 17 14 13 19 19 C 1.50701 * 109.46802 * 179.97438 * 18 17 14 20 20 C 1.38265 * 119.99028 * 269.72986 * 19 18 17 21 21 C 1.38225 * 120.05090 * 179.73017 * 20 19 18 22 22 C 1.38219 * 120.02765 * 0.54067 * 21 20 19 23 23 C 1.38441 * 119.97322 * 359.73190 * 22 21 20 24 24 F 1.35100 * 120.02540 * 180.02562 * 23 22 21 25 25 C 1.38177 * 119.98667 * 90.00336 * 19 18 17 26 26 H 0.97001 * 119.99806 * 0.02562 * 1 2 3 27 27 H 0.97001 * 120.00064 * 359.97438 * 9 7 2 28 28 H 1.09000 * 109.46835 * 59.99547 * 12 10 9 29 29 H 1.09003 * 109.47042 * 300.00487 * 12 10 9 30 30 H 0.96999 * 120.00130 * 344.99832 * 13 12 10 31 31 H 1.08996 * 109.47000 * 300.00248 * 17 14 13 32 32 H 1.09006 * 109.46904 * 59.99979 * 17 14 13 33 33 H 1.08993 * 109.47317 * 300.00064 * 18 17 14 34 34 H 1.08998 * 109.47275 * 60.00757 * 18 17 14 35 35 H 1.08001 * 119.97489 * 359.97438 * 20 19 18 36 36 H 1.07999 * 119.98516 * 180.27495 * 21 20 19 37 37 H 1.07995 * 120.01329 * 179.75030 * 22 21 20 38 38 H 1.08005 * 120.01445 * 359.97438 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2832 2.7464 -0.0006 6 1 3.1019 1.6962 1.2125 7 6 2.0088 -1.2035 -0.0005 8 1 3.0889 -1.2035 -0.0001 9 7 1.3233 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2101 -3.5579 -0.0001 12 6 1.2437 -4.8630 0.0000 13 7 2.1956 -5.9765 0.0005 14 16 1.6807 -7.5059 0.3724 15 8 2.8571 -8.2995 0.2980 16 8 0.9779 -7.3508 1.5977 17 6 0.5364 -7.9366 -0.9677 18 6 -0.0135 -9.3454 -0.7356 19 6 -0.9646 -9.7029 -1.8486 20 6 -2.3111 -9.4132 -1.7268 21 6 -3.1836 -9.7356 -2.7492 22 6 -2.7128 -10.3581 -3.8899 23 6 -1.3657 -10.6537 -4.0106 24 9 -0.9043 -11.2617 -5.1253 25 6 -0.4916 -10.3253 -2.9880 26 1 -0.4850 0.8401 -0.0004 27 1 0.3533 -2.3907 0.0002 28 1 0.6166 -4.9209 -0.8897 29 1 0.6173 -4.9205 0.8903 30 1 3.1275 -5.8180 -0.2170 31 1 -0.2873 -7.2230 -0.9855 32 1 1.0648 -7.9056 -1.9206 33 1 0.8104 -10.0587 -0.7180 34 1 -0.5418 -9.3768 0.2173 35 1 -2.6807 -8.9311 -0.8339 36 1 -4.2345 -9.5048 -2.6549 37 1 -3.3954 -10.6135 -4.6869 38 1 0.5596 -10.5551 -3.0812 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000915614978.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:10 Heat of formation + Delta-G solvation = -137.306924 kcal Electronic energy + Delta-G solvation = -24739.712606 eV Core-core repulsion = 20623.504216 eV Total energy + Delta-G solvation = -4116.208389 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.088 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.22894 -39.63107 -38.47121 -37.09386 -35.96335 -34.73781 -34.69758 -33.74558 -31.38484 -31.03111 -30.06259 -27.19404 -25.00689 -24.36268 -23.13497 -21.73117 -19.69992 -19.29228 -18.19619 -18.01094 -17.42156 -16.85436 -16.67096 -16.48245 -16.16747 -15.91431 -15.53560 -15.12424 -14.78257 -14.48908 -14.40106 -14.18892 -13.79681 -13.69246 -13.49646 -13.43604 -12.56250 -12.37536 -12.29388 -12.24910 -12.10245 -11.98055 -11.93328 -11.75674 -11.57386 -11.56320 -11.12984 -10.81318 -10.51862 -10.32186 -9.64806 -9.46213 -9.32983 -9.06149 -8.63367 -8.11899 -6.53656 -3.95303 0.17391 0.74302 0.78983 2.71566 3.12719 3.13503 3.20588 3.24841 3.67970 3.73472 3.83747 4.05975 4.10019 4.19822 4.32387 4.38100 4.60212 4.63835 4.77536 4.80262 4.92755 5.01114 5.13128 5.16052 5.36736 5.43323 5.47889 5.64960 5.69933 5.70335 5.78984 5.89163 6.05389 6.23694 6.47961 7.22648 7.44501 7.91251 8.43983 9.03541 9.37009 9.85817 10.63294 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.014552 B = 0.002483 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.726591 B =11275.478594 C =12315.949975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.026 3.974 3 Si 0.933 3.067 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.305 4.305 8 H 0.105 0.895 9 N -0.552 5.552 10 C 0.434 3.566 11 O -0.589 6.589 12 C 0.103 3.897 13 N -1.099 6.099 14 S 2.618 3.382 15 O -0.958 6.958 16 O -0.954 6.954 17 C -0.633 4.633 18 C -0.073 4.073 19 C -0.046 4.046 20 C -0.125 4.125 21 C -0.087 4.087 22 C -0.158 4.158 23 C 0.100 3.900 24 F -0.140 7.140 25 C -0.151 4.151 26 H 0.274 0.726 27 H 0.395 0.605 28 H 0.079 0.921 29 H 0.096 0.904 30 H 0.427 0.573 31 H 0.137 0.863 32 H 0.137 0.863 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.134 0.866 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.753 -19.725 -5.763 22.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.434 4.434 8 H 0.123 0.877 9 N -0.188 5.188 10 C 0.218 3.782 11 O -0.474 6.474 12 C -0.028 4.028 13 N -0.863 5.863 14 S 2.709 3.291 15 O -0.948 6.948 16 O -0.943 6.943 17 C -0.761 4.761 18 C -0.112 4.112 19 C -0.047 4.047 20 C -0.143 4.143 21 C -0.105 4.105 22 C -0.176 4.176 23 C 0.081 3.919 24 F -0.118 7.118 25 C -0.170 4.170 26 H 0.084 0.916 27 H 0.229 0.771 28 H 0.097 0.903 29 H 0.114 0.886 30 H 0.266 0.734 31 H 0.156 0.844 32 H 0.156 0.844 33 H 0.111 0.889 34 H 0.113 0.887 35 H 0.152 0.848 36 H 0.153 0.847 37 H 0.153 0.847 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -7.983 -20.078 -5.012 22.180 hybrid contribution -0.189 1.087 -1.101 1.558 sum -8.172 -18.991 -6.113 21.559 Atomic orbital electron populations 1.69597 1.05987 1.28607 1.49525 1.25306 0.95671 0.99893 0.96801 0.85875 0.78785 0.80146 0.79190 1.19805 1.20870 1.19755 1.19687 0.93465 0.82029 1.48240 0.87741 1.41809 1.09373 1.04507 1.63083 1.19603 0.88365 0.84679 0.85567 1.90516 1.13686 1.86562 1.56647 1.20976 0.91533 0.87640 1.02644 1.55169 1.20144 1.22595 1.88378 1.04755 0.75209 0.73052 0.76106 1.93604 1.45096 1.68670 1.87421 1.93608 1.76166 1.85003 1.39565 1.30764 1.17931 1.05547 1.21870 1.20332 0.99142 0.93553 0.98161 1.19465 0.94117 0.96645 0.94451 1.21218 0.92590 1.00644 0.99892 1.21046 1.00336 0.96686 0.92419 1.21197 0.93940 1.02328 1.00169 1.17693 0.92798 0.97499 0.83910 1.91513 1.89408 1.80741 1.50170 1.21093 1.00497 1.02016 0.93371 0.91569 0.77131 0.90317 0.88645 0.73402 0.84422 0.84445 0.88927 0.88655 0.84787 0.84701 0.84721 0.84417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.33 13.05 55.50 0.72 -22.61 16 2 C 0.03 0.67 5.50 -17.46 -0.10 0.57 16 3 Si 0.93 20.32 29.55 -169.99 -5.02 15.30 16 4 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 5 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 6 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 7 C -0.30 -8.14 9.68 -14.93 -0.14 -8.29 16 8 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16 9 N -0.55 -13.19 5.29 -10.96 -0.06 -13.25 16 10 C 0.43 9.59 7.85 -10.99 -0.09 9.50 16 11 O -0.59 -15.08 15.30 5.55 0.08 -15.00 16 12 C 0.10 1.61 6.61 -5.20 -0.03 1.57 16 13 N -1.10 -16.12 5.82 -11.66 -0.07 -16.18 16 14 S 2.62 32.16 5.46 -107.50 -0.59 31.58 16 15 O -0.96 -14.40 18.08 -57.54 -1.04 -15.44 16 16 O -0.95 -14.50 17.50 -57.54 -1.01 -15.51 16 17 C -0.63 -5.15 6.05 37.16 0.22 -4.92 16 18 C -0.07 -0.55 5.35 -27.88 -0.15 -0.70 16 19 C -0.05 -0.36 5.13 -104.63 -0.54 -0.90 16 20 C -0.13 -0.90 9.70 -39.58 -0.38 -1.28 16 21 C -0.09 -0.58 10.04 -39.59 -0.40 -0.98 16 22 C -0.16 -1.20 10.03 -39.51 -0.40 -1.59 16 23 C 0.10 0.91 7.30 -39.42 -0.29 0.62 16 24 F -0.14 -1.41 17.27 2.25 0.04 -1.37 16 25 C -0.15 -1.29 9.68 -39.51 -0.38 -1.67 16 26 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 27 H 0.40 8.84 7.90 -40.82 -0.32 8.52 16 28 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.10 1.38 7.69 -51.93 -0.40 0.98 16 30 H 0.43 6.82 7.67 -34.48 -0.26 6.55 16 31 H 0.14 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.14 0.96 8.14 -51.92 -0.42 0.53 16 33 H 0.09 0.61 8.09 -51.93 -0.42 0.19 16 34 H 0.09 0.60 8.08 -51.93 -0.42 0.18 16 35 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 36 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16 37 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 38 H 0.14 1.01 8.06 -52.48 -0.42 0.59 16 LS Contribution 353.12 15.07 5.32 5.32 Total: -1.00 -34.91 353.12 -8.58 -43.49 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -4.30 Total: 11.75 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: -2.67 Total: -8.07 kcal Atomic # 7 Polarization: -52.64 SS G_CDS: 0.60 Total: -52.04 kcal Atomic # 8 Polarization: -43.98 SS G_CDS: -1.96 Total: -45.94 kcal Atomic # 9 Polarization: -1.41 SS G_CDS: 0.04 Total: -1.37 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Atomic # 16 Polarization: 32.16 SS G_CDS: -0.59 Total: 31.58 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.91 -8.58 -43.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915614978.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.815 kcal (2) G-P(sol) polarization free energy of solvation -34.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds