Wall clock time and date at job start Tue Mar 31 2020 05:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42908 * 109.47099 * 2 1 4 4 C 1.42896 * 113.99768 * 180.02562 * 3 2 1 5 5 C 1.53007 * 109.46848 * 180.02562 * 4 3 2 6 6 O 1.42892 * 109.47398 * 64.99438 * 5 4 3 7 7 C 1.42904 * 114.00125 * 179.97438 * 6 5 4 8 8 C 1.52996 * 109.47358 * 180.02562 * 7 6 5 9 9 N 1.46502 * 109.47048 * 65.00012 * 8 7 6 10 10 C 1.34778 * 119.99545 * 180.02562 * 9 8 7 11 11 O 1.21585 * 120.00569 * 359.97438 * 10 9 8 12 12 N 1.34781 * 119.99776 * 180.02562 * 10 9 8 13 13 C 1.46500 * 119.99994 * 179.97438 * 12 10 9 14 14 C 1.53076 * 109.43981 * 84.79590 * 13 12 10 15 15 C 1.53183 * 109.29478 * 181.23571 * 14 13 12 16 16 N 1.46930 * 108.89468 * 305.57480 * 15 14 13 17 17 C 1.36937 * 120.63259 * 233.51494 * 16 15 14 18 18 H 1.08000 * 119.99761 * 151.83401 * 17 16 15 19 19 C 1.38806 * 120.00219 * 331.83653 * 17 16 15 20 20 N 1.31624 * 120.00191 * 343.07619 * 19 17 16 21 21 Si 1.86800 * 120.00146 * 163.07294 * 19 17 16 22 22 H 1.48506 * 109.46812 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47258 * 119.99807 * 21 19 17 24 24 H 1.48499 * 109.47344 * 240.00342 * 21 19 17 25 25 C 1.46925 * 118.73328 * 53.53726 * 16 15 14 26 26 C 1.53033 * 109.45902 * 204.99610 * 13 12 10 27 27 H 1.08997 * 109.47208 * 59.99083 * 1 2 3 28 28 H 1.08995 * 109.47269 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46851 * 299.99355 * 1 2 3 30 30 H 1.09000 * 109.46851 * 240.00645 * 2 1 3 31 31 H 1.08994 * 109.47416 * 120.00186 * 2 1 3 32 32 H 1.08987 * 109.47396 * 60.00051 * 4 3 2 33 33 H 1.09007 * 109.47024 * 300.00003 * 4 3 2 34 34 H 1.09006 * 109.46343 * 304.99587 * 5 4 3 35 35 H 1.08997 * 109.46845 * 185.00190 * 5 4 3 36 36 H 1.08998 * 109.46876 * 60.00303 * 7 6 5 37 37 H 1.09002 * 109.47107 * 300.00184 * 7 6 5 38 38 H 1.09000 * 109.46822 * 305.00234 * 8 7 6 39 39 H 1.09000 * 109.47239 * 185.00100 * 8 7 6 40 40 H 0.96997 * 120.00325 * 0.02562 * 9 8 7 41 41 H 0.97007 * 119.99982 * 359.97438 * 12 10 9 42 42 H 1.08994 * 109.45870 * 324.97548 * 13 12 10 43 43 H 1.09005 * 109.39190 * 61.35477 * 14 13 12 44 44 H 1.09004 * 109.62337 * 301.25270 * 14 13 12 45 45 H 1.09005 * 109.58619 * 185.72200 * 15 14 13 46 46 H 1.08998 * 109.58733 * 65.43770 * 15 14 13 47 47 H 0.96995 * 120.00379 * 180.02562 * 20 19 17 48 48 H 1.09001 * 109.58688 * 66.18006 * 25 16 15 49 49 H 1.08996 * 109.58570 * 186.45714 * 25 16 15 50 50 H 1.09003 * 109.49897 * 58.68032 * 26 13 12 51 51 H 1.09000 * 109.52987 * 298.59684 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3474 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8254 2.9385 0.0001 6 8 3.3986 3.5448 1.2216 7 6 3.7204 4.9333 1.3247 8 6 3.2195 5.4748 2.6652 9 7 3.9491 4.8257 3.7573 10 6 3.6735 5.1478 5.0367 11 8 2.8197 5.9773 5.2845 12 7 4.3450 4.5510 6.0414 13 6 4.0458 4.9015 7.4321 14 6 2.8574 4.0706 7.9225 15 6 2.5279 4.4617 9.3665 16 7 3.7408 4.3263 10.1847 17 6 3.7302 3.5741 11.3289 18 1 4.6384 3.1013 11.6726 19 6 2.5524 3.4192 12.0468 20 7 1.5425 4.2373 11.8390 21 14 2.4005 2.0495 13.3079 22 1 3.6667 1.2747 13.3520 23 1 2.1328 2.6359 14.6458 24 1 1.2818 1.1495 12.9290 25 6 4.9650 5.0139 9.7520 26 6 5.2697 4.6144 8.3048 27 1 -0.3633 0.5140 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 3.8333 0.9768 -0.8907 33 1 3.8340 0.9764 0.8892 34 1 3.3491 3.4419 -0.8413 35 1 4.9081 3.0256 -0.0899 36 1 3.2423 5.4785 0.5109 37 1 4.8010 5.0615 1.2625 38 1 2.1543 5.2668 2.7658 39 1 3.3851 6.5513 2.7069 40 1 4.6304 4.1642 3.5597 41 1 5.0264 3.8895 5.8438 42 1 3.7960 5.9606 7.4940 43 1 3.1144 3.0121 7.8818 44 1 1.9916 4.2598 7.2878 45 1 1.7500 3.8041 9.7547 46 1 2.1810 5.4946 9.3953 47 1 0.7196 4.1293 12.3410 48 1 4.8184 6.0924 9.8101 49 1 5.7947 4.7228 10.3961 50 1 6.1201 5.1904 7.9397 51 1 5.5057 3.5510 8.2630 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000917314855.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:31 Heat of formation + Delta-G solvation = -107.867144 kcal Electronic energy + Delta-G solvation = -28347.659137 eV Core-core repulsion = 24282.819638 eV Total energy + Delta-G solvation = -4064.839499 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 329.215 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -39.87874 -38.89360 -37.86375 -37.30349 -34.75354 -34.20329 -32.29658 -31.96587 -30.37681 -29.84809 -29.32416 -28.25403 -24.92387 -23.13155 -22.97559 -22.96157 -22.15088 -21.76165 -20.51113 -19.36587 -18.04486 -17.54179 -17.26904 -16.79119 -16.39215 -16.11717 -15.59217 -15.31371 -15.06727 -14.77407 -14.27134 -14.13537 -13.92666 -13.72240 -13.45231 -13.39811 -13.03519 -12.94268 -12.90517 -12.46591 -12.32850 -12.21368 -11.87787 -11.79747 -11.49588 -11.40963 -11.28759 -11.06580 -10.85645 -10.69777 -10.30792 -10.16149 -10.07955 -10.00334 -9.96537 -9.86729 -9.69018 -9.47407 -9.04112 -8.52990 -8.31079 -6.62561 -5.73288 -3.16429 2.90676 3.21326 3.29155 3.40651 3.48027 3.50208 3.52414 4.44846 4.50771 4.53670 4.65642 4.72016 4.73725 4.84251 4.86296 4.98444 4.99222 5.02774 5.04796 5.26298 5.37893 5.40844 5.46142 5.51811 5.53427 5.58530 5.73519 5.74074 5.81309 5.92212 6.17355 6.31261 6.45741 6.53136 6.54967 6.68578 6.72307 6.75322 6.85354 6.87675 6.99549 7.04353 7.22553 7.46942 7.76090 7.84927 8.27417 8.50593 8.89407 9.26326 9.89805 10.46848 11.35176 Molecular weight = 329.21amu Principal moments of inertia in cm(-1) A = 0.012482 B = 0.002198 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2242.739464 B =12734.492635 C =14194.042042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.381 6.381 4 C 0.064 3.936 5 C 0.064 3.936 6 O -0.375 6.375 7 C 0.050 3.950 8 C 0.143 3.857 9 N -0.747 5.747 10 C 0.701 3.299 11 O -0.591 6.591 12 N -0.740 5.740 13 C 0.169 3.831 14 C -0.146 4.146 15 C 0.173 3.827 16 N -0.593 5.593 17 C -0.253 4.253 18 H 0.066 0.934 19 C 0.001 3.999 20 N -0.901 5.901 21 Si 0.901 3.099 22 H -0.278 1.278 23 H -0.291 1.291 24 H -0.289 1.289 25 C 0.149 3.851 26 C -0.138 4.138 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.045 0.955 31 H 0.049 0.951 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.055 0.945 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.395 0.605 41 H 0.389 0.611 42 H 0.080 0.920 43 H 0.052 0.948 44 H 0.054 0.946 45 H 0.088 0.912 46 H 0.021 0.979 47 H 0.253 0.747 48 H 0.020 0.980 49 H 0.058 0.942 50 H 0.054 0.946 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.055 -4.788 -28.023 29.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.300 6.300 4 C -0.013 4.013 5 C -0.013 4.013 6 O -0.294 6.294 7 C -0.027 4.027 8 C 0.019 3.981 9 N -0.404 5.404 10 C 0.401 3.599 11 O -0.469 6.469 12 N -0.394 5.394 13 C 0.065 3.935 14 C -0.187 4.187 15 C 0.047 3.953 16 N -0.316 5.316 17 C -0.382 4.382 18 H 0.083 0.917 19 C -0.197 4.197 20 N -0.545 5.545 21 Si 0.731 3.269 22 H -0.203 1.203 23 H -0.218 1.218 24 H -0.216 1.216 25 C 0.021 3.979 26 C -0.178 4.178 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.228 0.772 41 H 0.222 0.778 42 H 0.098 0.902 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.106 0.894 46 H 0.039 0.961 47 H 0.063 0.937 48 H 0.038 0.962 49 H 0.076 0.924 50 H 0.073 0.927 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.865 -3.935 -27.535 28.426 hybrid contribution 0.804 -1.481 0.121 1.690 sum 6.668 -5.416 -27.414 28.729 Atomic orbital electron populations 1.21741 0.93598 1.02268 1.03335 1.22469 0.95858 0.83712 0.99920 1.87976 1.20328 1.26362 1.95376 1.22499 0.82461 0.95503 1.00839 1.22513 0.98189 0.92747 0.87838 1.88042 1.81006 1.22659 1.37707 1.22801 0.99462 0.82827 0.97577 1.21142 0.97413 0.96568 0.83006 1.45015 1.43953 1.47027 1.04432 1.16000 0.81847 0.81604 0.80420 1.90927 1.35613 1.37021 1.83314 1.45504 1.42249 1.45407 1.06210 1.20887 0.95626 1.00008 0.76951 1.22575 0.96830 0.99111 1.00174 1.20755 0.89977 0.99266 0.85291 1.44116 1.06443 1.56123 1.24892 1.19206 0.96086 1.22578 1.00351 0.91652 1.25070 0.97993 0.98665 0.97993 1.70049 1.05117 1.36006 1.43327 0.86240 0.77621 0.81981 0.81011 1.20298 1.21755 1.21590 1.20836 0.90864 0.94949 0.91214 1.22330 0.95884 1.01356 0.98224 0.91958 0.91098 0.91530 0.93640 0.93259 0.91964 0.92344 0.92413 0.91802 0.91570 0.92702 0.90742 0.90218 0.77169 0.77812 0.90150 0.92887 0.92768 0.89362 0.96132 0.93652 0.96201 0.92393 0.92714 0.91962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 10.28 37.16 0.38 -0.71 16 2 C 0.06 0.44 6.66 37.16 0.25 0.68 16 3 O -0.38 -3.83 10.31 -40.09 -0.41 -4.24 16 4 C 0.06 0.46 6.32 37.16 0.23 0.70 16 5 C 0.06 0.44 6.32 37.16 0.23 0.67 16 6 O -0.37 -3.61 10.25 -40.09 -0.41 -4.02 16 7 C 0.05 0.38 6.07 37.16 0.23 0.61 16 8 C 0.14 1.52 6.06 -4.04 -0.02 1.50 16 9 N -0.75 -8.90 5.51 -65.22 -0.36 -9.26 16 10 C 0.70 11.41 8.53 -86.91 -0.74 10.67 16 11 O -0.59 -12.31 16.01 5.29 0.08 -12.22 16 12 N -0.74 -11.16 5.08 -58.62 -0.30 -11.46 16 13 C 0.17 3.11 2.41 -67.87 -0.16 2.94 16 14 C -0.15 -3.09 5.66 -26.60 -0.15 -3.24 16 15 C 0.17 4.38 5.30 -3.71 -0.02 4.36 16 16 N -0.59 -15.16 3.00 -172.33 -0.52 -15.68 16 17 C -0.25 -7.01 9.58 -15.06 -0.14 -7.16 16 18 H 0.07 1.77 7.89 -52.49 -0.41 1.36 16 19 C 0.00 0.04 4.92 -17.43 -0.09 -0.04 16 20 N -0.90 -26.84 11.20 55.49 0.62 -26.21 16 21 Si 0.90 21.98 29.59 -169.99 -5.03 16.95 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 25 C 0.15 3.13 6.52 -3.71 -0.02 3.11 16 26 C -0.14 -2.37 5.55 -26.62 -0.15 -2.51 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.30 8.14 -51.94 -0.42 -0.12 16 33 H 0.06 0.43 8.14 -51.92 -0.42 0.00 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 36 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.39 3.69 8.49 -40.82 -0.35 3.35 16 41 H 0.39 4.63 8.62 -40.82 -0.35 4.28 16 42 H 0.08 1.67 7.58 -51.93 -0.39 1.27 16 43 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 45 H 0.09 2.48 6.06 -51.93 -0.31 2.16 16 46 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 48 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 50 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 51 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 411.99 15.07 6.21 6.21 Total: -1.00 -35.19 411.99 -9.69 -44.88 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -9.40 Total: 3.49 kcal Atomic # 6 Polarization: 11.74 SS G_CDS: -0.18 Total: 11.57 kcal Atomic # 7 Polarization: -62.06 SS G_CDS: -0.55 Total: -62.62 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: -0.74 Total: -20.48 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.03 Total: 16.95 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -35.19 -9.69 -44.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000917314855.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.986 kcal (2) G-P(sol) polarization free energy of solvation -35.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds