Wall clock time and date at job start Tue Mar 31 2020 05:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86793 * 120.00456 * 2 1 4 4 H 1.48507 * 109.47081 * 264.98937 * 3 2 1 5 5 H 1.48502 * 109.47308 * 144.98913 * 3 2 1 6 6 H 1.48499 * 109.47100 * 24.98684 * 3 2 1 7 7 C 1.38812 * 119.99440 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00054 * 187.37604 * 7 2 1 9 9 N 1.36941 * 120.00565 * 7.38012 * 7 2 1 10 10 C 1.47021 * 125.64137 * 6.32996 * 9 7 2 11 11 C 1.54340 * 107.26384 * 178.85109 * 10 9 7 12 12 H 1.09001 * 110.50937 * 96.45359 * 11 10 9 13 13 O 1.42896 * 111.00357 * 219.60371 * 11 10 9 14 14 C 1.55153 * 103.01975 * 338.14806 * 11 10 9 15 15 H 1.09002 * 111.00288 * 277.22868 * 14 11 10 16 16 N 1.46497 * 111.03951 * 153.39185 * 14 11 10 17 17 C 1.34773 * 120.00358 * 161.32679 * 16 14 11 18 18 O 1.21280 * 119.99904 * 0.02562 * 17 16 14 19 19 C 1.50697 * 120.00213 * 180.02562 * 17 16 14 20 20 C 1.50699 * 109.47328 * 180.02562 * 19 17 16 21 21 C 1.33349 * 125.19346 * 89.71460 * 20 19 17 22 22 C 1.38476 * 114.93085 * 179.79435 * 21 20 19 23 23 C 1.33491 * 114.88225 * 0.50285 * 22 21 20 24 24 Cl 1.73608 * 125.20911 * 179.75281 * 23 22 21 25 25 S 1.75882 * 125.18615 * 270.02290 * 20 19 17 26 26 C 1.47414 * 125.65304 * 186.64665 * 9 7 2 27 27 H 0.97004 * 119.99432 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.88851 * 298.40020 * 10 9 7 29 29 H 1.09007 * 109.88284 * 59.56743 * 10 9 7 30 30 H 0.96698 * 114.00012 * 293.78373 * 13 11 10 31 31 H 0.97001 * 119.99529 * 341.33230 * 16 14 11 32 32 H 1.09008 * 109.47170 * 299.99948 * 19 17 16 33 33 H 1.08996 * 109.47536 * 59.99852 * 19 17 16 34 34 H 1.08001 * 122.53195 * 359.97438 * 21 20 19 35 35 H 1.07995 * 122.55544 * 180.23159 * 22 21 20 36 36 H 1.09003 * 110.36883 * 322.92426 * 26 9 7 37 37 H 1.09002 * 110.37021 * 85.24693 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.6037 1.9851 -1.3948 5 1 3.4909 1.4729 0.8033 6 1 1.3988 2.6809 0.5914 7 6 2.0101 -1.2022 0.0005 8 1 3.0835 -1.2061 0.1206 9 7 1.3339 -2.3833 -0.1513 10 6 -0.0986 -2.5176 -0.4534 11 6 -0.4047 -4.0266 -0.5603 12 1 -0.7972 -4.4045 0.3838 13 8 -1.3183 -4.2896 -1.6271 14 6 0.9858 -4.6447 -0.8634 15 1 1.2192 -4.5792 -1.9261 16 7 1.0577 -6.0317 -0.3974 17 6 2.0068 -6.8570 -0.8816 18 8 2.8017 -6.4512 -1.7028 19 6 2.0803 -8.2839 -0.4027 20 6 3.2206 -8.9873 -1.0928 21 6 4.4759 -9.0377 -0.6456 22 6 5.3534 -9.7472 -1.4482 23 6 4.8112 -10.2641 -2.5531 24 17 5.6640 -11.1930 -3.7463 25 16 3.1003 -9.8605 -2.6147 26 6 1.9203 -3.7306 -0.0323 27 1 -0.4849 0.8401 0.0004 28 1 -0.6897 -2.0733 0.3473 29 1 -0.3254 -2.0274 -1.4002 30 1 -2.2025 -3.9242 -1.4867 31 1 0.4221 -6.3561 0.2596 32 1 2.2444 -8.2976 0.6749 33 1 1.1452 -8.7936 -0.6343 34 1 4.7841 -8.5635 0.2745 35 1 6.3976 -9.8692 -1.2013 36 1 2.9289 -3.7432 -0.4456 37 1 1.9327 -4.0483 1.0103 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077797697.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:27 Heat of formation + Delta-G solvation = -26.372494 kcal Electronic energy + Delta-G solvation = -22976.371204 eV Core-core repulsion = 19293.309668 eV Total energy + Delta-G solvation = -3683.061536 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 330.059 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -39.87175 -38.33251 -37.70732 -36.77612 -35.11738 -34.07386 -32.43118 -31.57223 -28.58373 -27.52034 -26.58357 -24.48393 -23.54055 -21.00760 -20.53328 -20.12425 -19.62839 -17.81547 -17.33119 -17.02486 -16.53823 -16.05731 -15.72688 -15.05283 -14.70693 -14.21748 -14.05988 -13.80080 -13.59662 -13.23176 -13.17349 -13.04743 -12.71506 -12.52128 -12.12089 -11.99933 -11.67862 -11.53432 -11.28397 -11.26803 -10.94499 -10.91237 -10.83150 -10.20350 -9.94666 -9.88157 -9.82799 -9.38993 -8.89020 -8.75380 -8.68805 -8.66065 -6.92956 -5.78263 -3.14561 0.57498 0.90170 1.60883 2.01464 2.39620 2.71894 3.29808 3.38749 3.43950 3.45025 4.33962 4.41182 4.58243 4.80525 4.87797 5.06510 5.14130 5.18947 5.31353 5.40571 5.52708 5.63789 5.70884 5.78242 5.87022 6.04061 6.09653 6.12257 6.48141 6.59603 6.84324 7.26932 7.43581 7.61572 7.70296 8.05356 8.15309 8.34017 9.11958 9.72784 10.35778 11.32255 Molecular weight = 330.06amu Principal moments of inertia in cm(-1) A = 0.020615 B = 0.002452 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.903076 B =11418.197763 C =12195.250362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.007 4.007 3 Si 0.915 3.085 4 H -0.287 1.287 5 H -0.281 1.281 6 H -0.290 1.290 7 C -0.229 4.229 8 H 0.080 0.920 9 N -0.599 5.599 10 C 0.149 3.851 11 C 0.070 3.930 12 H 0.059 0.941 13 O -0.564 6.564 14 C 0.140 3.860 15 H 0.102 0.898 16 N -0.715 5.715 17 C 0.511 3.489 18 O -0.525 6.525 19 C -0.073 4.073 20 C -0.148 4.148 21 C -0.122 4.122 22 C -0.113 4.113 23 C -0.153 4.153 24 Cl -0.020 7.020 25 S 0.162 5.838 26 C 0.131 3.869 27 H 0.253 0.747 28 H 0.066 0.934 29 H 0.045 0.955 30 H 0.377 0.623 31 H 0.398 0.602 32 H 0.117 0.883 33 H 0.106 0.894 34 H 0.148 0.852 35 H 0.148 0.852 36 H 0.051 0.949 37 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.310 -22.867 0.126 22.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.204 4.204 3 Si 0.745 3.255 4 H -0.214 1.214 5 H -0.206 1.206 6 H -0.217 1.217 7 C -0.357 4.357 8 H 0.098 0.902 9 N -0.326 5.326 10 C 0.023 3.977 11 C 0.010 3.990 12 H 0.077 0.923 13 O -0.369 6.369 14 C 0.035 3.965 15 H 0.120 0.880 16 N -0.366 5.366 17 C 0.295 3.705 18 O -0.400 6.400 19 C -0.115 4.115 20 C -0.266 4.266 21 C -0.151 4.151 22 C -0.146 4.146 23 C -0.297 4.297 24 Cl 0.008 6.992 25 S 0.425 5.575 26 C 0.003 3.997 27 H 0.064 0.936 28 H 0.084 0.916 29 H 0.063 0.937 30 H 0.224 0.776 31 H 0.232 0.768 32 H 0.135 0.865 33 H 0.124 0.876 34 H 0.165 0.835 35 H 0.166 0.834 36 H 0.069 0.931 37 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 2.276 -23.038 -1.862 23.225 hybrid contribution 0.877 1.304 1.431 2.125 sum 3.153 -21.734 -0.432 21.966 Atomic orbital electron populations 1.69908 1.04990 1.25283 1.56816 1.24818 0.95740 0.97851 1.01960 0.86089 0.78568 0.83035 0.77793 1.21422 1.20620 1.21663 1.19073 0.91025 0.82328 1.43269 0.90200 1.44237 1.05013 0.99917 1.83460 1.21873 0.86494 0.88065 1.01266 1.23440 0.88539 0.98522 0.88524 0.92330 1.86461 1.24911 1.80020 1.45510 1.22237 0.94856 0.78911 1.00540 0.88040 1.45897 1.33504 1.11969 1.45210 1.20328 0.81172 0.86973 0.81989 1.90764 1.39917 1.76840 1.32473 1.20214 0.96945 0.92671 1.01633 1.23890 0.98698 1.05105 0.98930 1.19912 0.91446 1.01447 1.02340 1.20138 1.01875 0.99170 0.93414 1.25195 0.97897 1.08466 0.98151 1.98360 1.75419 1.70880 1.54502 1.84349 1.03013 1.49357 1.20738 1.21835 0.96071 0.85742 0.96042 0.93635 0.91585 0.93719 0.77611 0.76849 0.86549 0.87618 0.83457 0.83437 0.93112 0.95932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.51 10.48 55.49 0.58 -25.93 16 2 C -0.01 -0.21 5.45 -17.43 -0.09 -0.30 16 3 Si 0.91 22.04 29.56 -169.99 -5.02 17.02 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.23 -6.38 10.26 -15.06 -0.15 -6.53 16 8 H 0.08 2.17 7.84 -52.48 -0.41 1.76 16 9 N -0.60 -15.19 3.39 -170.06 -0.58 -15.76 16 10 C 0.15 3.46 5.21 -3.06 -0.02 3.45 16 11 C 0.07 1.24 3.94 -24.89 -0.10 1.14 16 12 H 0.06 0.90 8.00 -51.93 -0.42 0.48 16 13 O -0.56 -9.32 13.40 -35.23 -0.47 -9.79 16 14 C 0.14 2.54 3.04 -65.79 -0.20 2.34 16 15 H 0.10 2.15 7.73 -51.93 -0.40 1.75 16 16 N -0.71 -9.70 5.23 -51.73 -0.27 -9.97 16 17 C 0.51 7.09 7.82 -10.99 -0.09 7.01 16 18 O -0.52 -9.74 15.78 5.56 0.09 -9.65 16 19 C -0.07 -0.66 6.19 -29.04 -0.18 -0.84 16 20 C -0.15 -1.59 5.00 -36.02 -0.18 -1.77 16 21 C -0.12 -1.26 10.05 -41.20 -0.41 -1.67 16 22 C -0.11 -1.16 10.13 -41.15 -0.42 -1.57 16 23 C -0.15 -1.67 7.10 29.07 0.21 -1.46 16 24 Cl -0.02 -0.20 29.29 -51.86 -1.52 -1.72 16 25 S 0.16 1.76 23.33 -107.50 -2.51 -0.75 16 26 C 0.13 2.75 6.92 -2.54 -0.02 2.73 16 27 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 28 H 0.07 1.67 6.99 -51.93 -0.36 1.31 16 29 H 0.04 1.17 7.83 -51.93 -0.41 0.76 16 30 H 0.38 4.66 9.12 45.56 0.42 5.08 16 31 H 0.40 4.01 8.52 -40.82 -0.35 3.66 16 32 H 0.12 0.73 8.14 -51.92 -0.42 0.31 16 33 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.15 1.28 8.06 -52.49 -0.42 0.85 16 35 H 0.15 1.22 8.06 -52.49 -0.42 0.79 16 36 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 37 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 345.92 15.07 5.21 5.21 Total: -1.00 -33.90 345.92 -9.74 -43.65 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -3.60 Total: 5.18 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: -1.65 Total: 2.51 kcal Atomic # 7 Polarization: -51.40 SS G_CDS: -0.27 Total: -51.66 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: -0.38 Total: -19.44 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Atomic # 16 Polarization: 1.76 SS G_CDS: -2.51 Total: -0.75 kcal Atomic # 17 Polarization: -0.20 SS G_CDS: -1.52 Total: -1.72 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.90 -9.74 -43.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077797697.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.275 kcal (2) G-P(sol) polarization free energy of solvation -33.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds