Wall clock time and date at job start Tue Mar 31 2020 05:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86793 * 120.00456 * 2 1 4 4 H 1.48507 * 109.47081 * 264.98937 * 3 2 1 5 5 H 1.48502 * 109.47308 * 144.98913 * 3 2 1 6 6 H 1.48499 * 109.47100 * 24.98684 * 3 2 1 7 7 C 1.38812 * 119.99440 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00054 * 187.37604 * 7 2 1 9 9 N 1.36941 * 120.00565 * 7.38012 * 7 2 1 10 10 C 1.47021 * 125.64137 * 6.32996 * 9 7 2 11 11 C 1.54340 * 107.26384 * 178.85109 * 10 9 7 12 12 H 1.09001 * 110.50937 * 96.45359 * 11 10 9 13 13 O 1.42896 * 111.00357 * 219.60371 * 11 10 9 14 14 C 1.55153 * 103.01975 * 338.14806 * 11 10 9 15 15 H 1.09002 * 111.00288 * 277.22868 * 14 11 10 16 16 N 1.46497 * 111.03951 * 153.39185 * 14 11 10 17 17 C 1.34773 * 120.00358 * 161.32679 * 16 14 11 18 18 O 1.21280 * 119.99904 * 0.02562 * 17 16 14 19 19 C 1.50697 * 120.00213 * 180.02562 * 17 16 14 20 20 C 1.50699 * 109.47328 * 180.02562 * 19 17 16 21 21 C 1.33349 * 125.19346 * 89.71460 * 20 19 17 22 22 C 1.38476 * 114.93085 * 179.79435 * 21 20 19 23 23 C 1.33491 * 114.88225 * 0.50285 * 22 21 20 24 24 Cl 1.73608 * 125.20911 * 179.75281 * 23 22 21 25 25 S 1.75882 * 125.18615 * 270.02290 * 20 19 17 26 26 C 1.47414 * 125.65304 * 186.64665 * 9 7 2 27 27 H 0.97004 * 119.99432 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.88851 * 298.40020 * 10 9 7 29 29 H 1.09007 * 109.88284 * 59.56743 * 10 9 7 30 30 H 0.96698 * 114.00012 * 293.78373 * 13 11 10 31 31 H 0.97001 * 119.99529 * 341.33230 * 16 14 11 32 32 H 1.09008 * 109.47170 * 299.99948 * 19 17 16 33 33 H 1.08996 * 109.47536 * 59.99852 * 19 17 16 34 34 H 1.08001 * 122.53195 * 359.97438 * 21 20 19 35 35 H 1.07995 * 122.55544 * 180.23159 * 22 21 20 36 36 H 1.09003 * 110.36883 * 322.92426 * 26 9 7 37 37 H 1.09002 * 110.37021 * 85.24693 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.6037 1.9851 -1.3948 5 1 3.4909 1.4729 0.8033 6 1 1.3988 2.6809 0.5914 7 6 2.0101 -1.2022 0.0005 8 1 3.0835 -1.2061 0.1206 9 7 1.3339 -2.3833 -0.1513 10 6 -0.0986 -2.5176 -0.4534 11 6 -0.4047 -4.0266 -0.5603 12 1 -0.7972 -4.4045 0.3838 13 8 -1.3183 -4.2896 -1.6271 14 6 0.9858 -4.6447 -0.8634 15 1 1.2192 -4.5792 -1.9261 16 7 1.0577 -6.0317 -0.3974 17 6 2.0068 -6.8570 -0.8816 18 8 2.8017 -6.4512 -1.7028 19 6 2.0803 -8.2839 -0.4027 20 6 3.2206 -8.9873 -1.0928 21 6 4.4759 -9.0377 -0.6456 22 6 5.3534 -9.7472 -1.4482 23 6 4.8112 -10.2641 -2.5531 24 17 5.6640 -11.1930 -3.7463 25 16 3.1003 -9.8605 -2.6147 26 6 1.9203 -3.7306 -0.0323 27 1 -0.4849 0.8401 0.0004 28 1 -0.6897 -2.0733 0.3473 29 1 -0.3254 -2.0274 -1.4002 30 1 -2.2025 -3.9242 -1.4867 31 1 0.4221 -6.3561 0.2596 32 1 2.2444 -8.2976 0.6749 33 1 1.1452 -8.7936 -0.6343 34 1 4.7841 -8.5635 0.2745 35 1 6.3976 -9.8692 -1.2013 36 1 2.9289 -3.7432 -0.4456 37 1 1.9327 -4.0483 1.0103 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077797697.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:26 Heat of formation + Delta-G solvation = -51.863541 kcal Electronic energy + Delta-G solvation = -22977.476579 eV Core-core repulsion = 19293.309668 eV Total energy + Delta-G solvation = -3684.166911 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 330.059 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.07951 -39.56393 -38.76311 -37.57388 -36.67634 -35.52671 -33.76984 -32.96519 -30.25026 -28.96619 -27.77444 -26.25718 -24.43755 -22.53523 -22.03066 -21.50697 -20.42040 -19.16709 -18.52938 -18.44662 -17.82970 -17.32022 -16.85554 -16.41417 -16.11784 -15.78535 -15.42102 -14.89396 -14.59114 -14.50676 -14.37835 -14.23686 -13.93295 -13.83043 -13.75949 -13.19338 -13.09150 -12.84389 -12.75100 -12.67145 -12.47163 -12.10524 -12.04184 -11.89166 -11.69867 -11.49319 -11.15646 -10.87439 -10.74447 -10.14253 -9.55687 -9.48700 -8.96546 -7.89336 -5.28215 -0.22435 0.12632 0.83024 1.22739 1.44768 1.47783 1.55062 1.60376 1.65501 2.18612 2.47715 3.13655 3.29505 3.54875 3.57317 3.81169 3.97682 4.05950 4.19663 4.24317 4.35277 4.45992 4.54934 4.59108 4.64934 4.83949 4.96322 5.03454 5.11726 5.34865 5.37995 5.44441 5.48712 5.63678 6.13668 6.58545 6.86957 7.03414 7.29923 7.68558 8.30926 9.18764 Molecular weight = 330.06amu Principal moments of inertia in cm(-1) A = 0.020615 B = 0.002452 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.903076 B =11418.197763 C =12195.250362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.060 4.060 3 Si 0.978 3.022 4 H -0.289 1.289 5 H -0.269 1.269 6 H -0.289 1.289 7 C -0.249 4.249 8 H 0.078 0.922 9 N -0.622 5.622 10 C 0.155 3.845 11 C 0.093 3.907 12 H 0.098 0.902 13 O -0.569 6.569 14 C 0.156 3.844 15 H 0.067 0.933 16 N -0.700 5.700 17 C 0.509 3.491 18 O -0.577 6.577 19 C -0.062 4.062 20 C -0.157 4.157 21 C -0.128 4.128 22 C -0.117 4.117 23 C -0.167 4.167 24 Cl -0.017 7.017 25 S 0.143 5.857 26 C 0.132 3.868 27 H 0.250 0.750 28 H 0.043 0.957 29 H 0.004 0.996 30 H 0.397 0.603 31 H 0.420 0.580 32 H 0.155 0.845 33 H 0.136 0.864 34 H 0.165 0.835 35 H 0.164 0.836 36 H 0.031 0.969 37 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.135 -24.426 1.559 24.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.254 4.254 3 Si 0.806 3.194 4 H -0.216 1.216 5 H -0.194 1.194 6 H -0.215 1.215 7 C -0.377 4.377 8 H 0.096 0.904 9 N -0.349 5.349 10 C 0.029 3.971 11 C 0.033 3.967 12 H 0.116 0.884 13 O -0.377 6.377 14 C 0.049 3.951 15 H 0.085 0.915 16 N -0.353 5.353 17 C 0.296 3.704 18 O -0.455 6.455 19 C -0.103 4.103 20 C -0.276 4.276 21 C -0.157 4.157 22 C -0.149 4.149 23 C -0.311 4.311 24 Cl 0.011 6.989 25 S 0.406 5.594 26 C 0.005 3.995 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.022 0.978 30 H 0.247 0.753 31 H 0.258 0.742 32 H 0.173 0.827 33 H 0.154 0.846 34 H 0.183 0.817 35 H 0.182 0.818 36 H 0.049 0.951 37 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 2.070 -24.652 -0.403 24.742 hybrid contribution 0.970 1.762 0.948 2.224 sum 3.040 -22.890 0.545 23.097 Atomic orbital electron populations 1.70096 1.06123 1.25603 1.57517 1.25630 0.96694 1.00930 1.02115 0.85106 0.77741 0.78984 0.77563 1.21578 1.19361 1.21517 1.19398 0.91392 0.83840 1.43103 0.90372 1.44510 1.06112 1.00886 1.83406 1.21710 0.85344 0.91915 0.98141 1.23125 0.88825 0.94249 0.90499 0.88402 1.86429 1.26086 1.79789 1.45372 1.21654 0.94254 0.81123 0.98114 0.91508 1.45652 1.34209 1.09853 1.45562 1.21200 0.79816 0.88581 0.80788 1.90756 1.41863 1.78114 1.34806 1.20308 0.97858 0.88748 1.03384 1.24160 0.99510 1.05292 0.98626 1.20213 0.91370 1.01179 1.02981 1.20424 1.02811 0.98613 0.93083 1.25348 0.97972 1.09089 0.98668 1.98356 1.75286 1.70813 1.54428 1.84354 1.03524 1.49851 1.21677 1.21921 0.95631 0.84628 0.97301 0.94085 0.93912 0.97821 0.75315 0.74203 0.82737 0.84595 0.81740 0.81826 0.95051 0.93996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.52 10.48 21.65 0.23 -55.29 16 2 C -0.06 -3.41 5.45 84.86 0.46 -2.94 16 3 Si 0.98 45.79 29.56 68.60 2.03 47.82 16 4 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 5 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 6 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 7 C -0.25 -14.11 10.26 84.03 0.86 -13.25 16 8 H 0.08 4.32 7.84 -2.91 -0.02 4.29 16 9 N -0.62 -32.06 3.39 -691.96 -2.35 -34.40 16 10 C 0.15 7.32 5.21 86.73 0.45 7.77 16 11 C 0.09 3.15 3.94 31.79 0.13 3.28 16 12 H 0.10 2.62 8.00 -2.39 -0.02 2.60 16 13 O -0.57 -17.78 13.40 -148.98 -2.00 -19.78 16 14 C 0.16 5.50 3.04 46.38 0.14 5.64 16 15 H 0.07 2.87 7.73 -2.39 -0.02 2.85 16 16 N -0.70 -17.03 5.23 -435.98 -2.28 -19.31 16 17 C 0.51 12.95 7.82 87.66 0.69 13.64 16 18 O -0.58 -21.09 15.78 -3.03 -0.05 -21.14 16 19 C -0.06 -0.89 6.19 29.10 0.18 -0.71 16 20 C -0.16 -3.02 5.00 24.58 0.12 -2.90 16 21 C -0.13 -2.36 10.05 21.22 0.21 -2.15 16 22 C -0.12 -2.21 10.13 21.25 0.22 -1.99 16 23 C -0.17 -3.47 7.10 66.74 0.47 -3.00 16 24 Cl -0.02 -0.33 29.29 -2.72 -0.08 -0.41 16 25 S 0.14 2.95 23.33 -56.49 -1.32 1.63 16 26 C 0.13 5.52 6.92 86.86 0.60 6.12 16 27 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 28 H 0.04 2.20 6.99 -2.39 -0.02 2.19 16 29 H 0.00 0.19 7.83 -2.38 -0.02 0.18 16 30 H 0.40 8.99 9.12 -74.06 -0.68 8.31 16 31 H 0.42 6.58 8.52 -92.71 -0.79 5.79 16 32 H 0.16 1.12 8.14 -2.38 -0.02 1.10 16 33 H 0.14 1.21 8.14 -2.39 -0.02 1.20 16 34 H 0.17 2.38 8.06 -2.91 -0.02 2.35 16 35 H 0.16 2.42 8.06 -2.91 -0.02 2.40 16 36 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -76.75 345.92 -1.62 -78.37 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -0.34 Total: 13.01 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: 4.54 Total: 9.51 kcal Atomic # 7 Polarization: -104.61 SS G_CDS: -4.40 Total: -109.01 kcal Atomic # 8 Polarization: -38.87 SS G_CDS: -2.04 Total: -40.92 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Atomic # 16 Polarization: 2.95 SS G_CDS: -1.32 Total: 1.63 kcal Atomic # 17 Polarization: -0.33 SS G_CDS: -0.08 Total: -0.41 kcal Total: -76.75 -1.62 -78.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077797697.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.506 kcal (2) G-P(sol) polarization free energy of solvation -76.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds