Wall clock time and date at job start Tue Mar 31 2020 04:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42903 * 113.99838 * 2 1 4 4 C 1.53000 * 109.46726 * 179.97438 * 3 2 1 5 5 C 1.50703 * 109.46912 * 180.02562 * 4 3 2 6 6 O 1.21278 * 119.99985 * 359.97438 * 5 4 3 7 7 N 1.34777 * 120.00161 * 180.02562 * 5 4 3 8 8 C 1.46496 * 120.00271 * 180.02562 * 7 5 4 9 9 H 1.09000 * 109.52137 * 34.99555 * 8 7 5 10 10 C 1.53117 * 109.52055 * 274.86886 * 8 7 5 11 11 C 1.53038 * 109.27797 * 182.43819 * 10 8 7 12 12 N 1.46846 * 109.52264 * 59.18348 * 11 10 8 13 13 C 1.46902 * 111.00090 * 174.16151 * 12 11 10 14 14 C 1.50694 * 109.47162 * 66.04429 * 13 12 11 15 15 O 1.21293 * 120.00048 * 0.02562 * 14 13 12 16 16 N 1.34779 * 120.00111 * 180.02562 * 14 13 12 17 17 C 1.37101 * 120.00345 * 179.97438 * 16 14 13 18 18 H 1.08007 * 119.99552 * 0.02562 * 17 16 14 19 19 C 1.38944 * 119.99866 * 179.97438 * 17 16 14 20 20 N 1.31420 * 119.99407 * 180.02562 * 19 17 16 21 21 Si 1.86795 * 120.00252 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.46885 * 90.00173 * 21 19 17 23 23 H 1.48501 * 109.47162 * 209.99866 * 21 19 17 24 24 H 1.48498 * 109.47349 * 330.00000 * 21 19 17 25 25 C 1.46851 * 111.19442 * 298.25602 * 12 11 10 26 26 C 1.53039 * 109.57570 * 61.71108 * 25 12 11 27 27 H 1.09000 * 109.45684 * 60.82529 * 26 25 12 28 28 O 1.42898 * 109.55717 * 180.94314 * 26 25 12 29 29 H 1.08996 * 109.46933 * 60.00042 * 1 2 3 30 30 H 1.08996 * 109.46843 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46885 * 300.00332 * 1 2 3 32 32 H 1.09001 * 109.46938 * 60.00058 * 3 2 1 33 33 H 1.08992 * 109.47388 * 300.00049 * 3 2 1 34 34 H 1.09002 * 109.47398 * 300.00244 * 4 3 2 35 35 H 1.09001 * 109.47194 * 60.00425 * 4 3 2 36 36 H 0.97005 * 119.99463 * 359.97438 * 7 5 4 37 37 H 1.08998 * 109.50799 * 302.38452 * 10 8 7 38 38 H 1.09004 * 109.50481 * 62.50435 * 10 8 7 39 39 H 1.09005 * 109.46176 * 179.19836 * 11 10 8 40 40 H 1.09000 * 109.46543 * 299.17592 * 11 10 8 41 41 H 1.08999 * 109.46740 * 186.04426 * 13 12 11 42 42 H 1.08998 * 109.46553 * 306.04171 * 13 12 11 43 43 H 0.96998 * 119.99871 * 359.97438 * 16 14 13 44 44 H 0.96998 * 119.99326 * 180.02562 * 20 19 17 45 45 H 1.09001 * 109.46227 * 181.75700 * 25 12 11 46 46 H 1.08996 * 109.46688 * 301.72599 * 25 12 11 47 47 H 0.96705 * 113.99638 * 299.82920 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1485 2.5614 0.0013 6 8 3.4356 3.5425 0.0008 7 7 5.4888 2.7023 0.0014 8 6 6.0847 4.0406 0.0026 9 1 5.4641 4.7151 0.5924 10 6 6.1809 4.5591 -1.4349 11 6 6.8593 5.9309 -1.4329 12 7 8.1998 5.8145 -0.8448 13 6 8.9337 7.0826 -0.9521 14 6 8.2584 8.1273 -0.1015 15 8 7.2640 7.8433 0.5322 16 7 8.7595 9.3772 -0.0449 17 6 8.1449 10.3278 0.7286 18 1 7.2594 10.0749 1.2929 19 6 8.6619 11.6161 0.7873 20 7 8.0730 12.5271 1.5292 21 14 10.1946 12.0529 -0.1869 22 1 9.8029 12.5384 -1.5345 23 1 10.9462 13.1183 0.5239 24 1 11.0533 10.8492 -0.3248 25 6 8.1300 5.3634 0.5509 26 6 7.4889 3.9750 0.6096 27 1 8.0975 3.2699 0.0435 28 8 7.4011 3.5457 1.9697 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6887 1.8464 -0.8899 34 1 3.8568 0.6438 0.8908 35 1 3.8575 0.6436 -0.8892 36 1 6.0590 1.9174 0.0014 37 1 6.7683 3.8635 -2.0342 38 1 5.1800 4.6488 -1.8572 39 1 6.9422 6.2965 -2.4564 40 1 6.2643 6.6295 -0.8447 41 1 9.9579 6.9399 -0.6076 42 1 8.9424 7.4104 -1.9916 43 1 9.5550 9.6042 -0.5514 44 1 8.4337 13.4266 1.5699 45 1 9.1358 5.3169 0.9683 46 1 7.5289 6.0647 1.1297 47 1 8.2557 3.4814 2.4178 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099621626.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:43 Heat of formation + Delta-G solvation = -155.818451 kcal Electronic energy + Delta-G solvation = -28816.486256 eV Core-core repulsion = 24613.734337 eV Total energy + Delta-G solvation = -4202.751919 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.183 amu Computer time = 2.38 seconds Orbital eigenvalues (eV) -40.36904 -39.41142 -38.17656 -37.72148 -35.92324 -34.78301 -33.91792 -32.37997 -31.80463 -31.07227 -29.55547 -27.47803 -26.72597 -24.76118 -23.72903 -23.05035 -22.19811 -20.48234 -19.93835 -19.49607 -18.35824 -17.57620 -17.27492 -16.63037 -16.54486 -16.13551 -15.93184 -15.32705 -15.23893 -15.09871 -14.96113 -14.68927 -14.13487 -13.88885 -13.74686 -13.61054 -13.36143 -13.11917 -12.86101 -12.55629 -12.33286 -12.29575 -12.18514 -11.84254 -11.70272 -11.47153 -11.37409 -11.30701 -11.05045 -10.83466 -10.65074 -10.46180 -10.09462 -10.07175 -9.96877 -9.81345 -9.56371 -9.39539 -9.08275 -8.25477 -7.60658 -6.39211 -3.90755 2.55945 2.84195 2.96553 3.01332 3.10157 3.58726 3.68503 3.90834 4.03053 4.27510 4.53257 4.59421 4.73645 4.78664 4.89115 5.05358 5.07587 5.08971 5.10394 5.17547 5.25440 5.31279 5.35658 5.40925 5.50362 5.55594 5.58095 5.63327 5.75219 5.81801 5.84534 6.00598 6.07382 6.11082 6.41223 6.46832 6.59382 6.81481 7.10342 7.19331 7.41410 7.47831 7.61747 8.06888 8.14978 8.48869 8.86193 9.33422 9.71069 10.73466 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.022467 B = 0.002274 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.963580 B =12309.265556 C =12812.682528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.397 6.397 3 C 0.075 3.925 4 C -0.139 4.139 5 C 0.517 3.483 6 O -0.539 6.539 7 N -0.716 5.716 8 C 0.154 3.846 9 H 0.097 0.903 10 C -0.117 4.117 11 C 0.040 3.960 12 N -0.510 5.510 13 C 0.039 3.961 14 C 0.412 3.588 15 O -0.574 6.574 16 N -0.581 5.581 17 C -0.308 4.308 18 H 0.119 0.881 19 C 0.042 3.958 20 N -0.876 5.876 21 Si 0.881 3.119 22 H -0.270 1.270 23 H -0.276 1.276 24 H -0.269 1.269 25 C 0.002 3.998 26 C 0.107 3.893 27 H 0.061 0.939 28 O -0.562 6.562 29 H 0.042 0.958 30 H 0.086 0.914 31 H 0.043 0.957 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.399 0.601 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.091 0.909 42 H 0.092 0.908 43 H 0.371 0.629 44 H 0.274 0.726 45 H 0.070 0.930 46 H 0.098 0.902 47 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.832 -23.454 -6.451 24.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.316 6.316 3 C -0.002 4.002 4 C -0.179 4.179 5 C 0.303 3.697 6 O -0.416 6.416 7 N -0.366 5.366 8 C 0.050 3.950 9 H 0.115 0.885 10 C -0.156 4.156 11 C -0.089 4.089 12 N -0.234 5.234 13 C -0.093 4.093 14 C 0.198 3.802 15 O -0.459 6.459 16 N -0.219 5.219 17 C -0.437 4.437 18 H 0.137 0.863 19 C -0.162 4.162 20 N -0.516 5.516 21 Si 0.707 3.293 22 H -0.195 1.195 23 H -0.201 1.201 24 H -0.194 1.194 25 C -0.126 4.126 26 C 0.047 3.953 27 H 0.078 0.922 28 O -0.366 6.366 29 H 0.061 0.939 30 H 0.104 0.896 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.120 0.880 35 H 0.119 0.881 36 H 0.233 0.767 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.109 0.891 42 H 0.110 0.890 43 H 0.204 0.796 44 H 0.085 0.915 45 H 0.088 0.912 46 H 0.116 0.884 47 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -3.304 -23.244 -6.336 24.318 hybrid contribution 1.640 1.138 -0.118 2.000 sum -1.663 -22.106 -6.454 23.089 Atomic orbital electron populations 1.22733 0.80587 1.02665 1.00320 1.87786 1.20091 1.28156 1.95604 1.22174 0.91924 0.84095 1.01961 1.21462 0.95494 0.95349 1.05571 1.20355 0.82468 0.90967 0.75954 1.90751 1.60880 1.40703 1.49270 1.45910 1.06422 1.09175 1.75128 1.21035 0.93102 0.84118 0.96769 0.88475 1.21880 1.01124 0.97231 0.95374 1.22252 0.89793 0.96672 1.00134 1.62438 1.17329 1.26487 1.17179 1.22082 0.98289 0.88299 1.00585 1.21026 0.87815 0.83946 0.87440 1.90457 1.27554 1.79456 1.48440 1.42398 1.26497 1.10146 1.42891 1.19461 1.11817 0.88982 1.23469 0.86299 1.25094 0.98196 0.95603 0.97260 1.69633 1.39964 1.03745 1.38235 0.86652 0.82887 0.79052 0.80694 1.19538 1.20102 1.19418 1.23091 1.01684 0.96584 0.91284 1.21957 0.95262 0.95392 0.82656 0.92151 1.86550 1.35235 1.89762 1.25080 0.93924 0.89588 0.93878 0.92254 0.92301 0.88037 0.88120 0.76670 0.91297 0.90591 0.90890 0.90798 0.89080 0.88976 0.79589 0.91498 0.91181 0.88395 0.77474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.36 16 2 O -0.40 -3.99 10.70 -35.23 -0.38 -4.37 16 3 C 0.08 0.77 5.23 37.16 0.19 0.96 16 4 C -0.14 -1.24 6.07 -27.88 -0.17 -1.41 16 5 C 0.52 6.41 7.80 -10.98 -0.09 6.33 16 6 O -0.54 -9.08 15.65 5.56 0.09 -8.99 16 7 N -0.72 -7.95 4.99 -53.69 -0.27 -8.22 16 8 C 0.15 2.12 2.20 -67.81 -0.15 1.98 16 9 H 0.10 1.76 7.58 -51.93 -0.39 1.36 16 10 C -0.12 -1.54 5.67 -26.65 -0.15 -1.69 16 11 C 0.04 0.61 5.09 -3.83 -0.02 0.59 16 12 N -0.51 -7.55 4.86 -236.11 -1.15 -8.70 16 13 C 0.04 0.61 5.86 -4.98 -0.03 0.58 16 14 C 0.41 8.78 7.20 -10.99 -0.08 8.71 16 15 O -0.57 -14.31 11.20 5.55 0.06 -14.24 16 16 N -0.58 -13.33 5.09 -10.96 -0.06 -13.38 16 17 C -0.31 -8.54 10.16 -14.93 -0.15 -8.69 16 18 H 0.12 3.80 7.39 -52.48 -0.39 3.41 16 19 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 20 N -0.88 -25.33 13.96 55.50 0.77 -24.56 16 21 Si 0.88 18.96 27.74 -169.99 -4.71 14.25 16 22 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 23 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16 24 H -0.27 -5.23 6.52 56.52 0.37 -4.86 16 25 C 0.00 0.03 4.60 -3.83 -0.02 0.01 16 26 C 0.11 1.33 3.14 -26.65 -0.08 1.25 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 28 O -0.56 -6.89 13.24 -35.23 -0.47 -7.35 16 29 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 33 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 34 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.40 3.24 8.60 -40.82 -0.35 2.89 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.07 1.02 8.06 -51.93 -0.42 0.60 16 40 H 0.07 1.44 6.00 -51.93 -0.31 1.13 16 41 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.09 1.25 8.06 -51.93 -0.42 0.83 16 43 H 0.37 7.46 5.76 -40.82 -0.24 7.22 16 44 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 45 H 0.07 0.95 8.12 -51.93 -0.42 0.53 16 46 H 0.10 1.93 5.36 -51.93 -0.28 1.65 16 47 H 0.38 3.07 9.09 45.56 0.41 3.49 16 LS Contribution 379.49 15.07 5.72 5.72 Total: -1.00 -34.89 379.49 -6.73 -41.62 By element: Atomic # 1 Polarization: 23.83 SS G_CDS: -6.62 Total: 17.21 kcal Atomic # 6 Polarization: 10.74 SS G_CDS: 0.27 Total: 11.01 kcal Atomic # 7 Polarization: -54.16 SS G_CDS: -0.70 Total: -54.86 kcal Atomic # 8 Polarization: -34.26 SS G_CDS: -0.69 Total: -34.95 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -4.71 Total: 14.25 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.89 -6.73 -41.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099621626.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.196 kcal (2) G-P(sol) polarization free energy of solvation -34.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.38 seconds